Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037701_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:134444666:134446246:1 gene:Zm00001d037701 gene_biotype:protein_coding transcript_biotype:protein_coding description:cytochrome P450 family 96 subfamily A polypeptide 1
Sequence

ATGGGCGCCCTCCGGAGTTTAGCCATCTCCTACCCGGAGTTCCTCGTGGCCGGGCTCTGC
TTCGTCTCCCTCTCGGCCCTGCGCCACGCGATGCGTGAGCGGCGGCAACGCGCCCCCCTG
AGCTGGCCTGTGGTGGGCATGCTCCCGTTCGTGCTCGCGAACCTCGGGCGCCTCTACGAC
GCCATCACCGACGCCCTCCACGGGTCCGGGTGCACGCTCATGTTCCGCGGGCCGTGGCTC
GCCCGCGCGGACTTCCTGCTGACGTGCGACCCGGCGGCCGTCCAGCACTGCCTGGCGTCC
AACCACAGGGGCTACGACAGGGGCCGAGACTTTGCGGAGATGTTCGACCTCCTGGGCGAC
GGGCTGCTGGTTGCGGACGCCGCGTCGTGGGCGCGCCAGCGGCACGTCGCCGCCACCGTC
TTCGGCACCCCGGCGTTCCGGTCCTTCGTCCTGTGCACCATGGCGCGCCAGACGGCGCGG
CTGCTCGTGCCGTTCCTGGACTGCGCCGCCGCGGATCAGGAAGGGGACGGTGGCGTCGTT
GATCTCGAGGACGTGTTCATGCGGTACTCGCTCGATGTGACCTACGCCTCCGTGTTCGAT
GCCGACCTGGACATGCTGTGCGTCGCCGCCGCCTCGGCGCCGGTGCCGCCGTTCGGCCTG
GCGACCAGGGTGGCCAGCGAGTCTGTGCTCTTCAGGCACATCGTGCCGGCCTGGTGGTGG
AGGCTGCTGAGGTGGCTCAATGTCGGCTCCGAGAGGAGGCTGGCCGAGGCCAAGGCGGTC
CTCAACGAATTCGTCTACCGCGAGATCGCCAAACGCAAGTCACGGCTCGCCACCACAAGC
CAAGCAGGAGAAGGCTACGACCTCCTGTCACTGTACATGGCGTGGCCGAGGGAACCCGGT
ATGAGGGAGCGGCAGAGGGATCAGTTCCTCCGGGATTCCGCCGTCAGTTACTTGTTTGCG
GCCAAGGACCTCATCGTCGCCGCGCTCACCTGGTTCTTCTACATGCTCTGCACGCACCCG
CACGTCGAGGCCAAGATCCTCGACGAGCTGAGGTCCCTGCATCCCACAGCCACGGTCGCG
GCCACCGGCGGCGGCGAGCATGCCGTGTTCGACTCTGACGCGCTCCAGCCCGCGTCCTAC
CTCCACGCGGCGGTCCTCGAGACGCTGCGGCTGTTCCCGCCGGCGCCTTTCGAGGAGAAA
GAGGCAGTTCGCAGCGATGTGCTGCCTGACGGCACCACGGTGGCCAAGGGCACCAGGGTC
ATCTTCTGCATCTACGCCATGGGCAGGATGGAGGGGCTATGGGGTAGCGACTGCCACGAG
TTCCGACCGGAGCGGTGGCTGTCCGATATTGGCCGAGTCCGGCACGAGCCCAGCCACAAG
TTCGCCGTGTTCAACTGCGGCCCCAGAAGCTGCCTCGGGAAGAATCTGGGGCTCAGCAAC
ATCAAAATTGCCGCCGCCGCAATCTTATACAACTTTCGGGTGGAGCTCATCGACGGCCAT
ATCGTTGAGCCACAGAACTCAGTGGTGCTTCTCACCAAGAACGGGATGAGGGTTAGGATC
AAGAGGAGGCACGCAGCATGA

Peptide Sequence

PEP ID

Zm00001d037701_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:134444666:134446246:1 gene:Zm00001d037701 transcript:Zm00001d037701_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:cytochrome P450 family 96 subfamily A polypeptide 1
Sequence

MGALRSLAISYPEFLVAGLCFVSLSALRHAMRERRQRAPLSWPVVGMLPFVLANLGRLYD
AITDALHGSGCTLMFRGPWLARADFLLTCDPAAVQHCLASNHRGYDRGRDFAEMFDLLGD
GLLVADAASWARQRHVAATVFGTPAFRSFVLCTMARQTARLLVPFLDCAAADQEGDGGVV
DLEDVFMRYSLDVTYASVFDADLDMLCVAAASAPVPPFGLATRVASESVLFRHIVPAWWW
RLLRWLNVGSERRLAEAKAVLNEFVYREIAKRKSRLATTSQAGEGYDLLSLYMAWPREPG
MRERQRDQFLRDSAVSYLFAAKDLIVAALTWFFYMLCTHPHVEAKILDELRSLHPTATVA
ATGGGEHAVFDSDALQPASYLHAAVLETLRLFPPAPFEEKEAVRSDVLPDGTTVAKGTRV
IFCIYAMGRMEGLWGSDCHEFRPERWLSDIGRVRHEPSHKFAVFNCGPRSCLGKNLGLSN
IKIAAAAILYNFRVELIDGHIVEPQNSVVLLTKNGMRVRIKRRHAA

Transcript Sequence

Transcript ID

Zm00001d037701_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:134444666:134446246:1 gene:Zm00001d037701 gene_biotype:protein_coding transcript_biotype:protein_coding description:cytochrome P450 family 96 subfamily A polypeptide 1
Sequence

ATGGGCGCCCTCCGGAGTTTAGCCATCTCCTACCCGGAGTTCCTCGTGGCCGGGCTCTGC
TTCGTCTCCCTCTCGGCCCTGCGCCACGCGATGCGTGAGCGGCGGCAACGCGCCCCCCTG
AGCTGGCCTGTGGTGGGCATGCTCCCGTTCGTGCTCGCGAACCTCGGGCGCCTCTACGAC
GCCATCACCGACGCCCTCCACGGGTCCGGGTGCACGCTCATGTTCCGCGGGCCGTGGCTC
GCCCGCGCGGACTTCCTGCTGACGTGCGACCCGGCGGCCGTCCAGCACTGCCTGGCGTCC
AACCACAGGGGCTACGACAGGGGCCGAGACTTTGCGGAGATGTTCGACCTCCTGGGCGAC
GGGCTGCTGGTTGCGGACGCCGCGTCGTGGGCGCGCCAGCGGCACGTCGCCGCCACCGTC
TTCGGCACCCCGGCGTTCCGGTCCTTCGTCCTGTGCACCATGGCGCGCCAGACGGCGCGG
CTGCTCGTGCCGTTCCTGGACTGCGCCGCCGCGGATCAGGAAGGGGACGGTGGCGTCGTT
GATCTCGAGGACGTGTTCATGCGGTACTCGCTCGATGTGACCTACGCCTCCGTGTTCGAT
GCCGACCTGGACATGCTGTGCGTCGCCGCCGCCTCGGCGCCGGTGCCGCCGTTCGGCCTG
GCGACCAGGGTGGCCAGCGAGTCTGTGCTCTTCAGGCACATCGTGCCGGCCTGGTGGTGG
AGGCTGCTGAGGTGGCTCAATGTCGGCTCCGAGAGGAGGCTGGCCGAGGCCAAGGCGGTC
CTCAACGAATTCGTCTACCGCGAGATCGCCAAACGCAAGTCACGGCTCGCCACCACAAGC
CAAGCAGGAGAAGGCTACGACCTCCTGTCACTGTACATGGCGTGGCCGAGGGAACCCGGT
ATGAGGGAGCGGCAGAGGGATCAGTTCCTCCGGGATTCCGCCGTCAGTTACTTGTTTGCG
GCCAAGGACCTCATCGTCGCCGCGCTCACCTGGTTCTTCTACATGCTCTGCACGCACCCG
CACGTCGAGGCCAAGATCCTCGACGAGCTGAGGTCCCTGCATCCCACAGCCACGGTCGCG
GCCACCGGCGGCGGCGAGCATGCCGTGTTCGACTCTGACGCGCTCCAGCCCGCGTCCTAC
CTCCACGCGGCGGTCCTCGAGACGCTGCGGCTGTTCCCGCCGGCGCCTTTCGAGGAGAAA
GAGGCAGTTCGCAGCGATGTGCTGCCTGACGGCACCACGGTGGCCAAGGGCACCAGGGTC
ATCTTCTGCATCTACGCCATGGGCAGGATGGAGGGGCTATGGGGTAGCGACTGCCACGAG
TTCCGACCGGAGCGGTGGCTGTCCGATATTGGCCGAGTCCGGCACGAGCCCAGCCACAAG
TTCGCCGTGTTCAACTGCGGCCCCAGAAGCTGCCTCGGGAAGAATCTGGGGCTCAGCAAC
ATCAAAATTGCCGCCGCCGCAATCTTATACAACTTTCGGGTGGAGCTCATCGACGGCCAT
ATCGTTGAGCCACAGAACTCAGTGGTGCTTCTCACCAAGAACGGGATGAGGGTTAGGATC
AAGAGGAGGCACGCAGCATGA