Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037700_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:6:134420325:134425511:1 gene:Zm00001d037700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein 4

Sequence

ATGGTGCTGTCCAATTTGAAGGGCATTGCTGAGGGTAACCTGAATGCTGCAGTTGTTGAT
TGTTGCATTGGTATTCCAGTCTACTTTACGGATCTGCAGCGCAGGGCTGTTCTTGATGCT
GCTACTATTGCGGGTCTCCAGCCATTGCGATTGTTCCATGAGACAACAGCCACTGCACTG
GCATATGGTATTTATAAGACTGATCTCCCGGAGAATGACCAGTTGAACGTTGCATTTGTT
GATGTCGGTCATGCAAGCATGCAGGTCAGTGTTGTCGGTTACAAGAAGGGACAGCTCAAG
ATGTTGTCGCATACGTATGACCAGTCTCTTGGCGGGAGGGACTTTGATGAGGCCCTGTTT
AAGCACTTTGCAGCTAAATTCAAAGAGGAATATAAGATTGATGTGTACCAGAATGCGCGT
GCATGCATTAGGTTGCGTGTGGCATGTGAGAAACTTAAGAAGGTACTGAGCGCCAACCCA
GAGGCCCCACTGAACATTGAGTGTTTGATGGATGAGAAGGATGTGCGGGGTTTTATTAAA
AGGGAGGAGTTCGAACAGATCAGTGCCTCGGTGCTGGAACGCGTGAAAGGACCACTGGAA
AAGGCCTTGGCTGAAGCTGGGTTGACTACTGAAAATGTGCACTTTGTTGAGGTTGTTGGA
TCTGGTTCTCGTGTTCCGGCTATAATCAAGATAATAACTGATTTTTTTGGGAAGGAGCCA
AGACGAACCATGAATGCAAGTGAGTGTGTTGCGCGAGGATGTGCTCTTCAGTGTGCTATT
CTCAGCCCCACTTTCAAAGTGCGAGAATTCCAGGTTAATGATGGGTTTCCTTTCTCAATT
GCATTGTCATGGAATGGAGACTCCCAGAACACCCCCCAACAAACCCTTGTATTCCCAAAG
GGGAATGCAATTCCTAGCACTAAAGTTCTTACCTTCTTTAAATCCAGTACATTTGAAGTT
GATGTTTTGTATGTCGACCCAAACGGCTTACAAATTCCACAAAAAATAAGCACATACACA
ATTGGCCCTTTCCAAACCTCCAAAGGAGAGAAGGCCAAACTGAAAGTGAAAGTGCGTCTC
AACATCCATGGGACCGTTACAGTTGATTCAGCAATAATGCTGGAGGATGATGTGGAAGTT
CCAGTTTCATCTGCAAATGAAGCTCCAAATGATACTATGAAGATGGACACAGATGATGCA
CCAAGTGATCCTGCTGTTGCATCTGATGTGAATATGCAGGAGCAGGCTGCTCATGCAGCT
GAAAATGGACCACAAGATACTGAGGAAAAATCTGTTCCGATGGAAACTGATGCAAAGGTT
GAGCCGTCAAAAAAGAAAGTTAAGAAAATTACTGTTCCGGTCCATGAGTTGGTCTATGGG
GCCTTGGCTGCGGCTGACCTGCAGAAGGCTGTAGAGAAAGAGTATGAGATGGCTCTTCAA
GACAGAGTAATGGAAGAAACAAAGGAGAAGAAGAATGCTGTTGAAGCTTATGTGTATGAC
ATGCGTAACAAGCTATATGACAAGTACAGTGATTTTGTCACGTCTGAGGACAAGGAAGGT
TTGATTGCTAAGCTTCAGGAGGTTGAAGACTGGCTCTATGAAGATGGCGAGGATGAAACT
AAGGGGGTTTATATTGCTAAGCTAGAAGAACTTAAAAAAGTTGGTGATCCTATTGAGCTG
CGCTTCAAGGAATGGGAGATTAGAAGTTCTGCTGTTAGCCAACTGGTATACTGCATCAAT
AGCTTCAGAGAAGCTGCACAGTCTACCGACCAGAAGTTTGAACACATAGACATGTCAGAA
AAGCGAAAGGTCATTAATGAGTGTTCGGAAGCAGAGACTTGGCTAATAGAGAAAAAGCAG
CAGCAGGATGCTCTGCCAAAGCATGCTAATTCGGTACTCCTTGCTGCTGACCTTAAGAAG
AAAGCTGAAACACTTGATAGGTTCTGCAAGCCGATCATGACGAAACCGAAGCCAGCTCCT
AAGCCGCAGACTCCGCCTGTGGCAGAAAACCAAGCTCCTGAGCCTCAGACACCAGAGCAG
CAGCAATCAGGTGGCGAAAGCACAGCCAGCGAGGGAGCCGCAGAGGAGCCTCGAGCCGAG
CAGATGGAGACAGACAAACCTGAGGGAGCCACAGATCCCTCGGCTTAG

Peptide Sequence

PEP ID

Zm00001d037700_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:6:134420325:134425511:1 gene:Zm00001d037700 transcript:Zm00001d037700_T017 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein 4

Sequence

MVLSNLKGIAEGNLNAAVVDCCIGIPVYFTDLQRRAVLDAATIAGLQPLRLFHETTATAL
AYGIYKTDLPENDQLNVAFVDVGHASMQVSVVGYKKGQLKMLSHTYDQSLGGRDFDEALF
KHFAAKFKEEYKIDVYQNARACIRLRVACEKLKKVLSANPEAPLNIECLMDEKDVRGFIK
REEFEQISASVLERVKGPLEKALAEAGLTTENVHFVEVVGSGSRVPAIIKIITDFFGKEP
RRTMNASECVARGCALQCAILSPTFKVREFQVNDGFPFSIALSWNGDSQNTPQQTLVFPK
GNAIPSTKVLTFFKSSTFEVDVLYVDPNGLQIPQKISTYTIGPFQTSKGEKAKLKVKVRL
NIHGTVTVDSAIMLEDDVEVPVSSANEAPNDTMKMDTDDAPSDPAVASDVNMQEQAAHAA
ENGPQDTEEKSVPMETDAKVEPSKKKVKKITVPVHELVYGALAAADLQKAVEKEYEMALQ
DRVMEETKEKKNAVEAYVYDMRNKLYDKYSDFVTSEDKEGLIAKLQEVEDWLYEDGEDET
KGVYIAKLEELKKVGDPIELRFKEWEIRSSAVSQLVYCINSFREAAQSTDQKFEHIDMSE
KRKVINECSEAETWLIEKKQQQDALPKHANSVLLAADLKKKAETLDRFCKPIMTKPKPAP
KPQTPPVAENQAPEPQTPEQQQSGGESTASEGAAEEPRAEQMETDKPEGATDPSA

Transcript Sequence

Transcript ID

Zm00001d037700_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:134420325:134425511:1 gene:Zm00001d037700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein 4

Sequence

GGCCCCGATGGTTTTCCCCTGGTCCATGTACGATACCTGGGCGAGGAACGGACGTTCACC
TCTACCCAGCTGCTTGCCATGGTGCTGTCCAATTTGAAGGGCATTGCTGAGGGTAACCTG
AATGCTGCAGTTGTTGATTGTTGCATTGGTATTCCAGTCTACTTTACGGATCTGCAGCGC
AGGGCTGTTCTTGATGCTGCTACTATTGCGGGTCTCCAGCCATTGCGATTGTTCCATGAG
ACAACAGCCACTGCACTGGCATATGGTATTTATAAGACTGATCTCCCGGAGAATGACCAG
TTGAACGTTGCATTTGTTGATGTCGGTCATGCAAGCATGCAGGTCAGTGTTGTCGGTTAC
AAGAAGGGACAGCTCAAGATGTTGTCGCATACGTATGACCAGTCTCTTGGCGGGAGGGAC
TTTGATGAGGCCCTGTTTAAGCACTTTGCAGCTAAATTCAAAGAGGAATATAAGATTGAT
GTGTACCAGAATGCGCGTGCATGCATTAGGTTGCGTGTGGCATGTGAGAAACTTAAGAAG
GTACTGAGCGCCAACCCAGAGGCCCCACTGAACATTGAGTGTTTGATGGATGAGAAGGAT
GTGCGGGGTTTTATTAAAAGGGAGGAGTTCGAACAGATCAGTGCCTCGGTGCTGGAACGC
GTGAAAGGACCACTGGAAAAGGCCTTGGCTGAAGCTGGGTTGACTACTGAAAATGTGCAC
TTTGTTGAGGTTGTTGGATCTGGTTCTCGTGTTCCGGCTATAATCAAGATAATAACTGAT
TTTTTTGGGAAGGAGCCAAGACGAACCATGAATGCAAGTGAGTGTGTTGCGCGAGGATGT
GCTCTTCAGTGTGCTATTCTCAGCCCCACTTTCAAAGTGCGAGAATTCCAGGTTAATGAT
GGGTTTCCTTTCTCAATTGCATTGTCATGGAATGGAGACTCCCAGAACACCCCCCAACAA
ACCCTTGTATTCCCAAAGGGGAATGCAATTCCTAGCACTAAAGTTCTTACCTTCTTTAAA
TCCAGTACATTTGAAGTTGATGTTTTGTATGTCGACCCAAACGGCTTACAAATTCCACAA
AAAATAAGCACATACACAATTGGCCCTTTCCAAACCTCCAAAGGAGAGAAGGCCAAACTG
AAAGTGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAATGCTG
GAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAAATGATACTATGAAG
ATGGACACAGATGATGCACCAAGTGATCCTGCTGTTGCATCTGATGTGAATATGCAGGAG
CAGGCTGCTCATGCAGCTGAAAATGGACCACAAGATACTGAGGAAAAATCTGTTCCGATG
GAAACTGATGCAAAGGTTGAGCCGTCAAAAAAGAAAGTTAAGAAAATTACTGTTCCGGTC
CATGAGTTGGTCTATGGGGCCTTGGCTGCGGCTGACCTGCAGAAGGCTGTAGAGAAAGAG
TATGAGATGGCTCTTCAAGACAGAGTAATGGAAGAAACAAAGGAGAAGAAGAATGCTGTT
GAAGCTTATGTGTATGACATGCGTAACAAGCTATATGACAAGTACAGTGATTTTGTCACG
TCTGAGGACAAGGAAGGTTTGATTGCTAAGCTTCAGGAGGTTGAAGACTGGCTCTATGAA
GATGGCGAGGATGAAACTAAGGGGGTTTATATTGCTAAGCTAGAAGAACTTAAAAAAGTT
GGTGATCCTATTGAGCTGCGCTTCAAGGAATGGGAGATTAGAAGTTCTGCTGTTAGCCAA
CTGGTATACTGCATCAATAGCTTCAGAGAAGCTGCACAGTCTACCGACCAGAAGTTTGAA
CACATAGACATGTCAGAAAAGCGAAAGGTCATTAATGAGTGTTCGGAAGCAGAGACTTGG
CTAATAGAGAAAAAGCAGCAGCAGGATGCTCTGCCAAAGCATGCTAATTCGGTACTCCTT
GCTGCTGACCTTAAGAAGAAAGCTGAAACACTTGATAGGTTCTGCAAGCCGATCATGACG
AAACCGAAGCCAGCTCCTAAGCCGCAGACTCCGCCTGTGGCAGAAAACCAAGCTCCTGAG
CCTCAGACACCAGAGCAGCAGCAATCAGGTGGCGAAAGCACAGCCAGCGAGGGAGCCGCA
GAGGAGCCTCGAGCCGAGCAGATGGAGACAGACAAACCTGAGGGAGCCACAGATCCCTCG
GCTTAGCTTTGCCAGTGATCAAACATTTGTGTGATTGACCCTGTTCACCTGCTGTTATAG
TCGGTAGGGGGGAGTGAACTAAGCGAGAGGTTCGCCACATTTGATTTGAGGATGTGTGTT
GGGACATTCAAGGTATTCTGTTTCTTGTCCTTGACAAGGGAGGTGGTTGGGTGTTTGAAG
GATAAGAGCAGTGGGGTACACTT