Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037648_T013
CDS Infomation

cds chromosome:B73_RefGen_v4:6:132797396:132805482:1 gene:Zm00001d037648 gene_biotype:protein_coding transcript_biotype:protein_coding description:Disease resistance protein RPP13
Sequence

ATGGATCTCTACACAAAATACGGGCCTGAATTCCAGCGTCGAGCAATGGTCACTGTGTCC
CAGAACTCAGATCCTGAGGCGGTCGTCAGAAATATACTGAACCAGGTCAAACCACTGTCC
AACAACGCGGAGAGGCGAGGCGAAGATAGCTCTGGCGCCGTCTCCTTGGGGAAGAAGAAT
CCAGTCATTGCAACTATATTAAGCCGAATTAGGCTGCCGTTCCCAAATCAAAAGCAAGAT
AATGGTGGCGGTCGTGACAAGCATGAACAAATAAAAAAGGAGTTGAAGAATTGCCTCGCA
GATACAAGGTACTTACTGTTAATTGATGATGTATGGTCATCATCAACATGGCAAAGTATT
TGGAAATATTTTCCTGAAGAAAATAAGAAGGGAAGCAGAATAATTGTCACCACACGGTTT
CAAGCTGTTGCCACGACATGCTCTGCACATAAAGATCAAGATCATATTCATTTGGTTGAT
GTTCTTTCCGGTGAAGAGGCCAACAGTTTATTCATCAAAACCTTGTCCGAGTGTAGAGGT
AATAGTGCCAGACAATCAAACCAGAAGGAATTTATGAGGATAATAAACTATTGCTACAAC
GACTTGCCTAGTGATCTCAAGACTTGCTGTCTGTATCTTAGCATATTTCCTAAGGGCCGT
GAAGTTAGCAGGAAGCGGCTGATTCGGAGGTGGATAGCGGAAGGTTTCGTCAGTGAGAAG
CAAGGTTTGAGTGTGGAGGATGTTGCTGACACATGCTTCAAACAGCTCATTGAAAGGAAG
ATGATGAGGCCCGTTGAGCACAACAGCAATGGAAGCGTCAAAAGTTGTCGGGTCCATGAC
ATGGTACTTGAGTACATCATTTCCAAGGCAGCAGAGGAGAATTTCATCACTGTGGTCGGT
AGCCACTGGTCCATGTCAACAAGTAGCAAGAAAGTTCGTAGGCTCACTATCCATGGCAGT
GACCCCAAACGTGCAAAGAATGTTGACAGTATGAACTTGTCACATGTCCGATCACTGACT
GTGTTCGAGAACCTGGACAAACTGCACTTCAAATCATTTAAAACTGGAATAGTGCAAGTG
TTAGATCTCGAAGGCTGCAAAGGTTTCAGGGAGAGCGATGCCAACGTTTCAGACATATGC
GAAATGATTCTACTTAAGTATCTGAGCCTACGGAAAACAGACATAAAAAATCTTCCCAAT
AATATTTCCAAGCTCAAGTACCTAGAGACTCTCGATGTTAGGGAGACAGAAGTTAAACAG
CTGCCTACGACTGTAGGGCAGTTGGAACGGATAACTAACATCCTTGGTGGTGATAAGAGA
AGACAGAGAACCCTGAAACTTCCTAAGGAGCTCAAGGGAACAATGAAATCTTTACGCATA
TTGTCGGGGGTTGAGATTGTGGAGGGATCAACAGCTGCATCAGACTTCAGTTACTTCACT
ACTCTGAGGAAGCTGGCAATTTACAGGATCCACCACAATGAAGATATATTCAAAAATTTG
CTGTCCTCGATCCAGTACCTCAGTGGTTATTCACTCCAAACTCTTTTAATCGTTGATGAG
TCATCTGAATTCTTCAAGACCCTGGAGTCAATGTCGCCATCCCATCTAACTGACCTGAGA
GCTCTGGAGCTGTCTGGCAAATTGCTTTACCTTCCAAAGTGGCTCGACACTCTTCAACAT
CTTGTGAAGTTAACGCTTTCAGCAACAGCCCTATGCACTGATAACTTTTTGGTCATCAGA
AAACTGAACTCGTTGTTTTCCCTCACCTTTTCAATCAGCGAAAAGCAAGACCCTGCTTTG
GCAGCCATTCTTGAGAAAAATAAGTCAGCTTCAAGAGGAGAAATCGTTGTGCCAGCTGGA
GGCTTCAGTAAGCTCAAGCTGCTTCGGATATTTGTTCCTCTTCTTCCATCCCTTACCTTC
TCAAAGAATGCTACACCACATCTGGAAAGGATTGAACTGCGTTTTAAAAAGCTGGAAGGA
TTTCATGGTGTGGATGAACTTGGAAAGCTCCAAGATGTGGTCTTAACAGTTGACGGGCAT
GCAAGTGAGAGGACAAATTCGATACTAGACGGATTGAAGCAGAGGCTAGAAGGAAAGTGC
AACCTCATTGTCAACAAGTATCACGACTGA

Peptide Sequence

PEP ID

Zm00001d037648_P013
PEP Infomation

pep chromosome:B73_RefGen_v4:6:132797396:132805482:1 gene:Zm00001d037648 transcript:Zm00001d037648_T013 gene_biotype:protein_coding transcript_biotype:protein_coding description:Disease resistance protein RPP13
Sequence

MDLYTKYGPEFQRRAMVTVSQNSDPEAVVRNILNQVKPLSNNAERRGEDSSGAVSLGKKN
PVIATILSRIRLPFPNQKQDNGGGRDKHEQIKKELKNCLADTRYLLLIDDVWSSSTWQSI
WKYFPEENKKGSRIIVTTRFQAVATTCSAHKDQDHIHLVDVLSGEEANSLFIKTLSECRG
NSARQSNQKEFMRIINYCYNDLPSDLKTCCLYLSIFPKGREVSRKRLIRRWIAEGFVSEK
QGLSVEDVADTCFKQLIERKMMRPVEHNSNGSVKSCRVHDMVLEYIISKAAEENFITVVG
SHWSMSTSSKKVRRLTIHGSDPKRAKNVDSMNLSHVRSLTVFENLDKLHFKSFKTGIVQV
LDLEGCKGFRESDANVSDICEMILLKYLSLRKTDIKNLPNNISKLKYLETLDVRETEVKQ
LPTTVGQLERITNILGGDKRRQRTLKLPKELKGTMKSLRILSGVEIVEGSTAASDFSYFT
TLRKLAIYRIHHNEDIFKNLLSSIQYLSGYSLQTLLIVDESSEFFKTLESMSPSHLTDLR
ALELSGKLLYLPKWLDTLQHLVKLTLSATALCTDNFLVIRKLNSLFSLTFSISEKQDPAL
AAILEKNKSASRGEIVVPAGGFSKLKLLRIFVPLLPSLTFSKNATPHLERIELRFKKLEG
FHGVDELGKLQDVVLTVDGHASERTNSILDGLKQRLEGKCNLIVNKYHD

Transcript Sequence

Transcript ID

Zm00001d037648_T013
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:132797396:132805482:1 gene:Zm00001d037648 gene_biotype:protein_coding transcript_biotype:protein_coding description:Disease resistance protein RPP13
Sequence

GGGAGAAAACCGGCGTGCTGAGCATTGTCGGGTTTGGTGGTGTGGGTAAAACCACCATCG
CAATGGATCTCTACACAAAATACGGGCCTGAATTCCAGCGTCGAGCAATGGTCACTGTGT
CCCAGAACTCAGATCCTGAGGCGGTCGTCAGAAATATACTGAACCAGGTCAAACCACTGT
CCAACAACGCGGAGAGGCGAGGCGAAGATAGCTCTGGCGCCGTCTCCTTGGGGAAGAAGA
ATCCAGTCATTGCAACTATATTAAGCCGAATTAGGCTGCCGTTCCCAAATCAAAAGCAAG
ATAATGGTGGCGGTCGTGACAAGCATGAACAAATAAAAAAGGAGTTGAAGAATTGCCTCG
CAGATACAAGGTACTTACTGTTAATTGATGATGTATGGTCATCATCAACATGGCAAAGTA
TTTGGAAATATTTTCCTGAAGAAAATAAGAAGGGAAGCAGAATAATTGTCACCACACGGT
TTCAAGCTGTTGCCACGACATGCTCTGCACATAAAGATCAAGATCATATTCATTTGGTTG
ATGTTCTTTCCGGTGAAGAGGCCAACAGTTTATTCATCAAAACCTTGTCCGAGTGTAGAG
GTAATAGTGCCAGACAATCAAACCAGAAGGAATTTATGAGGATAATAAACTATTGCTACA
ACGACTTGCCTAGTGATCTCAAGACTTGCTGTCTGTATCTTAGCATATTTCCTAAGGGCC
GTGAAGTTAGCAGGAAGCGGCTGATTCGGAGGTGGATAGCGGAAGGTTTCGTCAGTGAGA
AGCAAGGTTTGAGTGTGGAGGATGTTGCTGACACATGCTTCAAACAGCTCATTGAAAGGA
AGATGATGAGGCCCGTTGAGCACAACAGCAATGGAAGCGTCAAAAGTTGTCGGGTCCATG
ACATGGTACTTGAGTACATCATTTCCAAGGCAGCAGAGGAGAATTTCATCACTGTGGTCG
GTAGCCACTGGTCCATGTCAACAAGTAGCAAGAAAGTTCGTAGGCTCACTATCCATGGCA
GTGACCCCAAACGTGCAAAGAATGTTGACAGTATGAACTTGTCACATGTCCGATCACTGA
CTGTGTTCGAGAACCTGGACAAACTGCACTTCAAATCATTTAAAACTGGAATAGTGCAAG
TGTTAGATCTCGAAGGCTGCAAAGGTTTCAGGGAGAGCGATGCCAACGTTTCAGACATAT
GCGAAATGATTCTACTTAAGTATCTGAGCCTACGGAAAACAGACATAAAAAATCTTCCCA
ATAATATTTCCAAGCTCAAGTACCTAGAGACTCTCGATGTTAGGGAGACAGAAGTTAAAC
AGCTGCCTACGACTGTAGGGCAGTTGGAACGGATAACTAACATCCTTGGTGGTGATAAGA
GAAGACAGAGAACCCTGAAACTTCCTAAGGAGCTCAAGGGAACAATGAAATCTTTACGCA
TATTGTCGGGGGTTGAGATTGTGGAGGGATCAACAGCTGCATCAGACTTCAGTTACTTCA
CTACTCTGAGGAAGCTGGCAATTTACAGGATCCACCACAATGAAGATATATTCAAAAATT
TGCTGTCCTCGATCCAGTACCTCAGTGGTTATTCACTCCAAACTCTTTTAATCGTTGATG
AGTCATCTGAATTCTTCAAGACCCTGGAGTCAATGTCGCCATCCCATCTAACTGACCTGA
GAGCTCTGGAGCTGTCTGGCAAATTGCTTTACCTTCCAAAGTGGCTCGACACTCTTCAAC
ATCTTGTGAAGTTAACGCTTTCAGCAACAGCCCTATGCACTGATAACTTTTTGGTCATCA
GAAAACTGAACTCGTTGTTTTCCCTCACCTTTTCAATCAGCGAAAAGCAAGACCCTGCTT
TGGCAGCCATTCTTGAGAAAAATAAGTCAGCTTCAAGAGGAGAAATCGTTGTGCCAGCTG
GAGGCTTCAGTAAGCTCAAGCTGCTTCGGATATTTGTTCCTCTTCTTCCATCCCTTACCT
TCTCAAAGAATGCTACACCACATCTGGAAAGGATTGAACTGCGTTTTAAAAAGCTGGAAG
GATTTCATGGTGTGGATGAACTTGGAAAGCTCCAAGATGTGGTCTTAACAGTTGACGGGC
ATGCAAGTGAGAGGACAAATTCGATACTAGACGGATTGAAGCAGAGGCTAGAAGGAAAGT
GCAACCTCATTGTCAACAAGTATCACGACTGATTGAAATGGATGTAAACATATTTCTTTG
AGTAGAAAGATCACCAGCTCATTAGGTAAATAAGCTTTGTGGCTGTACACAAACCTAGGT
GTTTGACATCTGGATTCCTTTCGTGTTATCTTCATTTATTGTTGGCTTTATGTCGGTTCG
GTTTTGTAACATGTCAGACAAGAGTGAATTTTTTTTAGACCAAAGGCCAAACTTTAGCAC
CATCTTTTGTTGAGTACATGTTCTATATGCTCCCGGGCATCTGTTGTGGATTTTTTATAT
ATATAAATGCCACCGTTTTG