Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037557_T071
CDS Infomation

cds chromosome:B73_RefGen_v4:6:129486480:129520745:-1 gene:Zm00001d037557 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase UPL6
Sequence

ATGTTCTTCTCCGGTGACCCATCGGCGCGGCGGCGGGTCGACCTCGGCGGGCGGAGCAGC
AAGGAGCGGGACCGCAAGGTGCTGCTCGAGCAGACGCGCGAGGAGCGGCGCCGGCGCCAG
GGCCTCCGCCTCCAGAACACCTCCGCCACGAAGATCCAGAAATTCTTCAGAGGGAAGAAG
GCTTTGGAATTGGCCCGCTCAGAGGTTCGGAAGAATTTTTGCTCAACTTTTGGGGAGCAT
TGCGAGAGGATAGAGTGGAACATCTTTGGCACTAATTCTGACTTTCTTCGGCAATTACTG
TTCTTCTTCAATGCAAATGAAGACAATGACATAGCTATACTTTGTCATGTCTGCAATTTG
CTGCTGCAATATGTTAAACAAGGCGGAGATGTTGTAACTCTCTTCACTGGTGTGAATGGC
TCCTCGCTGCAACCTCTTGTTGCTCACCGAGTAAAAAAATTTGCCCTCATCTGTGTGCAA
GCAGTCTATCAAAAGAGGCATGATTGGGGCAGCCAACTTTTAACAACACCTGGAACCACA
TCAGTGCCTTCTGTGTCATTACTGGAAACTGTAGGTTGCTTGATAAATCCAAAATTTCTT
TGGAACTGCAAAGTAGTTGGTTATCTTCAGCAGAGAAAGATCTATTGCTTATTTCGTGGC
ATTATCGTATCTGTACCGCAAAATGTCAGAAATTCTGGTCATTTTGATAGTGCATCTGTG
CTGGAGCAAGTGCTTATGCTTGTTGCTTCGCATGTTGGCCATCATCCCTGTTGTTGTCTG
AAAGTGGATCCAAGATGGAGTTTCTCGTCTCAGCTTCTGTCCATCCCTTTTCTATGGCAT
CGTTTACCACAACTCAAGAAGGTTTTCTCCGTTAACGGGCTCAACAAATATTATATCCAT
CAAATAGCTTGCCTTTTGCCCAGTCTTGTTGATGTCCTTCCAAACGATATATCAGCTAAT
CATCCAGGATATGCGTGCGTCCTTGCAAATGTTCTTGAAGCTGCAACCTGGATTTTGTCT
GATGCAAAGTTAGCTTCTGATTCAGCGGCTGACATCATTGCTGTTTGTACCTCGTTGTTG
GATACGTTGCCAGCAGTCACAACACCTACTGAAAGGGCAGATGACGATGATGAGATGCCC
ATGGATGTCAATATTAAAATTAATCTTGATGTTGATTTGGAAAGACAGATAACTGCAGCA
ATTGATTCAAAGCTACTTCAACATTTGGTGAATGCCCTCTTCAGAGGTACATTAAGCACA
AATGATTCTGATCTGTCTGGACCATCAGATGCTGAAGTTGATGCTGTAGGATCTATTTGT
GCTTTTCTTCATGTTACGTTCAATACATTTCCTCTAGAGCGAATTATGACTGTCCTGGCA
TACCGGACTGAAATTGTTCCTGCACTATGGAAGTTCATAAAACGTTGCCATGCAAGCCGA
AGATGGCCATTTTTTTTGAAGTTTGCATCTTCATTACCTGCTGATTCTCCTGGTTGGCTC
CTTCCCATGTCTGTATTCTGTCCCATATACAAGCACATGTTGAAGATCATTGATACCGGG
GAGTTCTATGAACAGGAGAAACCCCTTTCCCTTAAAGATTTGAAGTCCTTGGTTCTCATT
TTAAAACAGGCATTATGGCAACTTCTGTGGGTTATTCCATCCTCTTCTACTCAGAAAGTG
TCACCCAACCCTTCAGGCCTTAAAAAGTTGTCAGTGGAGAATGTCAAGACTAGAGCTAGG
GTTGGGTTATCTGAACTTCTCACACAGGTT

Peptide Sequence

PEP ID

Zm00001d037557_P071
PEP Infomation

pep chromosome:B73_RefGen_v4:6:129486480:129520745:-1 gene:Zm00001d037557 transcript:Zm00001d037557_T071 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase UPL6
Sequence

MFFSGDPSARRRVDLGGRSSKERDRKVLLEQTREERRRRQGLRLQNTSATKIQKFFRGKK
ALELARSEVRKNFCSTFGEHCERIEWNIFGTNSDFLRQLLFFFNANEDNDIAILCHVCNL
LLQYVKQGGDVVTLFTGVNGSSLQPLVAHRVKKFALICVQAVYQKRHDWGSQLLTTPGTT
SVPSVSLLETVGCLINPKFLWNCKVVGYLQQRKIYCLFRGIIVSVPQNVRNSGHFDSASV
LEQVLMLVASHVGHHPCCCLKVDPRWSFSSQLLSIPFLWHRLPQLKKVFSVNGLNKYYIH
QIACLLPSLVDVLPNDISANHPGYACVLANVLEAATWILSDAKLASDSAADIIAVCTSLL
DTLPAVTTPTERADDDDEMPMDVNIKINLDVDLERQITAAIDSKLLQHLVNALFRGTLST
NDSDLSGPSDAEVDAVGSICAFLHVTFNTFPLERIMTVLAYRTEIVPALWKFIKRCHASR
RWPFFLKFASSLPADSPGWLLPMSVFCPIYKHMLKIIDTGEFYEQEKPLSLKDLKSLVLI
LKQALWQLLWVIPSSSTQKVSPNPSGLKKLSVENVKTRARVGLSELLTQV

Transcript Sequence

Transcript ID

Zm00001d037557_T071
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:129486480:129520745:-1 gene:Zm00001d037557 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase UPL6
Sequence

CGATCCGACCGATCCAATTTCCCTTTTCTCCACACCATTTTTTGCTGGGTGATTCTTATT
TCGGTGGTCGGTGGGGGGGCGTCGACGCGTGGTGCAGGCAGGTGAGGGAGGCGGCGATGT
TCTTCTCCGGTGACCCATCGGCGCGGCGGCGGGTCGACCTCGGCGGGCGGAGCAGCAAGG
AGCGGGACCGCAAGGTGCTGCTCGAGCAGACGCGCGAGGAGCGGCGCCGGCGCCAGGGCC
TCCGCCTCCAGAACACCTCCGCCACGAAGATCCAGAAATTCTTCAGAGGGAAGAAGGCTT
TGGAATTGGCCCGCTCAGAGGTTCGGAAGAATTTTTGCTCAACTTTTGGGGAGCATTGCG
AGAGGATAGAGTGGAACATCTTTGGCACTAATTCTGACTTTCTTCGGCAATTACTGTTCT
TCTTCAATGCAAATGAAGACAATGACATAGCTATACTTTGTCATGTCTGCAATTTGCTGC
TGCAATATGTTAAACAAGGCGGAGATGTTGTAACTCTCTTCACTGGTGTGAATGGCTCCT
CGCTGCAACCTCTTGTTGCTCACCGAGTAAAAAAATTTGCCCTCATCTGTGTGCAAGCAG
TCTATCAAAAGAGGCATGATTGGGGCAGCCAACTTTTAACAACACCTGGAACCACATCAG
TGCCTTCTGTGTCATTACTGGAAACTGTAGGTTGCTTGATAAATCCAAAATTTCTTTGGA
ACTGCAAAGTAGTTGGTTATCTTCAGCAGAGAAAGATCTATTGCTTATTTCGTGGCATTA
TCGTATCTGTACCGCAAAATGTCAGAAATTCTGGTCATTTTGATAGTGCATCTGTGCTGG
AGCAAGTGCTTATGCTTGTTGCTTCGCATGTTGGCCATCATCCCTGTTGTTGTCTGAAAG
TGGATCCAAGATGGAGTTTCTCGTCTCAGCTTCTGTCCATCCCTTTTCTATGGCATCGTT
TACCACAACTCAAGAAGGTTTTCTCCGTTAACGGGCTCAACAAATATTATATCCATCAAA
TAGCTTGCCTTTTGCCCAGTCTTGTTGATGTCCTTCCAAACGATATATCAGCTAATCATC
CAGGATATGCGTGCGTCCTTGCAAATGTTCTTGAAGCTGCAACCTGGATTTTGTCTGATG
CAAAGTTAGCTTCTGATTCAGCGGCTGACATCATTGCTGTTTGTACCTCGTTGTTGGATA
CGTTGCCAGCAGTCACAACACCTACTGAAAGGGCAGATGACGATGATGAGATGCCCATGG
ATGTCAATATTAAAATTAATCTTGATGTTGATTTGGAAAGACAGATAACTGCAGCAATTG
ATTCAAAGCTACTTCAACATTTGGTGAATGCCCTCTTCAGAGGTACATTAAGCACAAATG
ATTCTGATCTGTCTGGACCATCAGATGCTGAAGTTGATGCTGTAGGATCTATTTGTGCTT
TTCTTCATGTTACGTTCAATACATTTCCTCTAGAGCGAATTATGACTGTCCTGGCATACC
GGACTGAAATTGTTCCTGCACTATGGAAGTTCATAAAACGTTGCCATGCAAGCCGAAGAT
GGCCATTTTTTTTGAAGTTTGCATCTTCATTACCTGCTGATTCTCCTGGTTGGCTCCTTC
CCATGTCTGTATTCTGTCCCATATACAAGCACATGTTGAAGATCATTGATACCGGGGAGT
TCTATGAACAGGAGAAACCCCTTTCCCTTAAAGATTTGAAGTCCTTGGTTCTCATTTTAA
AACAGGCATTATGGCAACTTCTGTGGGTTATTCCATCCTCTTCTACTCAGAAAGTGTCAC
CCAACCCTTCAGGCCTTAAAAAGTTGTCAGTGGAGAATGTCAAGACTAGAGCTAGGGTTG
GGTTATCTGAACTTCTCACACAGGTTG