Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037551_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:129107765:129110513:-1 gene:Zm00001d037551 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable GTP diphosphokinase CRSH chloroplastic
Sequence

ATGGCGACCGCCACTGCCGCCCCCGTCCCCGCCGGCGGCCACCCGTACCGCCGCGCCCGC
ACTCGCTGCGGCCCACCGCGCCTGCACCGCCTGCGCTTCCCGGCCGCAGCAGCAGCCGCT
TCGTCTTCCCTGCCCGCCCCGTCGTCCATGCTGCCACCGCTGCCAGATGGAGGCGGGCGG
CTGGTGGCGGAGCTGGTGTGCGCGTTCAACGAGCTCACGGAGCGGATGGGGGAGGACCTG
GCGACGTCCTCCTCGTCGAGCCTGCTCTTCCGTGTGCTGAAGCTGGCGCTCCCCGCCCTC
CGCGACGTGGAGGGCGGCCGGGCACTCGCACGCGCGCTCGCCGTCGCCGCGACCCTCGCT
GACCTCCAGATGGATGCTGAAGTCATATCAGCCGGCATACTAAGAGAAGCATTAGATGCA
GGAGCTGTAAGAATGAGGGATGTAAAAACACAGATTGGGATCAGCACAGCTCATTTGCTG
CATGACAGCTTAAGGATTAAGCATGCTCCTTCGAAGCTTGACGTATTGGATGATGAAGGT
GCAAGCACATTGAGAAGGTTTATTCTTTCATACTATGATATCAGGGCAGTCATATTGGAG
CTTGGAATGAAGCTTGATATGATGAGACACCTTGATTACCTCCCTAAGTATTTGCAGCAG
ATAAAATCTCTCGAAGTCATGAAGATATATGCCCCACTTGCACATGCTGTTGGAGCGGGT
AATCTGTCACTAGAATTAGAGGATCTTTCATTTCGTTACTTGTTTCCTCATTCCTATGAC
CATGTTGATCAGTGGTTGAGAAGCCAAGAAGGTGACTGCAAGGCTATAATAAATTTGTAC
AAGGAGCAGTTGCTTCAAGCACTGCAGGCTGATAATGAGTTGAGGAGGATTGCACAGGAC
ATCTCAATTCAAGGGAGGTATAAAAGCCGTTTCAGTACTATGAAGAAGCTAGTAAAAGAT
GGACGGAAGCCAGAAGAAGTTAAAGACATTCTAGGTTTGAGGGTAATCTTGGAGCCTCGG
TGTGGTGGCAATTCATCTGATTGGGGCCCTAGGGCTTGCCACAGGACACATGAAATTATT
CAAGCTATGTGGAAGGAAATCCCGGGTAGAACAAAAGATTATATAACTCACCCAAAACGA
AATGGTTACCAGAGCTTGCATGTGGCCATCGATGTCAGTGAACCTGGGAAGGTGAGGCCA
TTAATGGAGGTACAGATACGCACCAAGGAGATGCATAGGTTTGCTGTTGGTGGAGAGGCA
TCTCACTCTCTCTACAAGGGTGGTCTTACTGATCCTGGAGAGGCTAAAAGGCTCAAGACT
ATTATGTTGGCGGCAGCGGAGTTAGCAGCTCTGCGCCTACGAGACCTACCAGGCAGTGAC
CACGTAGTTGGGAACTGCAAGAACCCGGCTTTCTGTCAGCTTGACAAAAATGGGGATGGG
AGAATCAGCATCGAGGAGCTCACTGAGGTGATGGAGGATCTAGGTGCTGGAGGCGAAGAC
GCAACAGAGCTCATGCATCTTCTTGATGCAAACAGTGACGGCTCCTTGAGCTCTGACGAA
TTCGAGTCATTCCAGAGACAGATCGAAGTGATGAGAAACTTGGAGGACGATGATAACCAC
TATAGGAAGATCTTGAAGGAGAAGCTGCACACGATCGACAGTGCAGGTCTCATCCATGTG
TACCGCAAGGAGCTCAGTGACAAATTGCTTGTGGGCTGA

Peptide Sequence

PEP ID

Zm00001d037551_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:129107765:129110513:-1 gene:Zm00001d037551 transcript:Zm00001d037551_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable GTP diphosphokinase CRSH chloroplastic
Sequence

MATATAAPVPAGGHPYRRARTRCGPPRLHRLRFPAAAAAASSSLPAPSSMLPPLPDGGGR
LVAELVCAFNELTERMGEDLATSSSSSLLFRVLKLALPALRDVEGGRALARALAVAATLA
DLQMDAEVISAGILREALDAGAVRMRDVKTQIGISTAHLLHDSLRIKHAPSKLDVLDDEG
ASTLRRFILSYYDIRAVILELGMKLDMMRHLDYLPKYLQQIKSLEVMKIYAPLAHAVGAG
NLSLELEDLSFRYLFPHSYDHVDQWLRSQEGDCKAIINLYKEQLLQALQADNELRRIAQD
ISIQGRYKSRFSTMKKLVKDGRKPEEVKDILGLRVILEPRCGGNSSDWGPRACHRTHEII
QAMWKEIPGRTKDYITHPKRNGYQSLHVAIDVSEPGKVRPLMEVQIRTKEMHRFAVGGEA
SHSLYKGGLTDPGEAKRLKTIMLAAAELAALRLRDLPGSDHVVGNCKNPAFCQLDKNGDG
RISIEELTEVMEDLGAGGEDATELMHLLDANSDGSLSSDEFESFQRQIEVMRNLEDDDNH
YRKILKEKLHTIDSAGLIHVYRKELSDKLLVG

Transcript Sequence

Transcript ID

Zm00001d037551_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:129107765:129110513:-1 gene:Zm00001d037551 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable GTP diphosphokinase CRSH chloroplastic
Sequence

GTCGGCCGGACGAGCAGGGCCCAAGGGCCCACCTTACCATGGCGACCGCCACTGCCGCCC
CCGTCCCCGCCGGCGGCCACCCGTACCGCCGCGCCCGCACTCGCTGCGGCCCACCGCGCC
TGCACCGCCTGCGCTTCCCGGCCGCAGCAGCAGCCGCTTCGTCTTCCCTGCCCGCCCCGT
CGTCCATGCTGCCACCGCTGCCAGATGGAGGCGGGCGGCTGGTGGCGGAGCTGGTGTGCG
CGTTCAACGAGCTCACGGAGCGGATGGGGGAGGACCTGGCGACGTCCTCCTCGTCGAGCC
TGCTCTTCCGTGTGCTGAAGCTGGCGCTCCCCGCCCTCCGCGACGTGGAGGGCGGCCGGG
CACTCGCACGCGCGCTCGCCGTCGCCGCGACCCTCGCTGACCTCCAGATGGATGCTGAAG
TCATATCAGCCGGCATACTAAGAGAAGCATTAGATGCAGGAGCTGTAAGAATGAGGGATG
TAAAAACACAGATTGGGATCAGCACAGCTCATTTGCTGCATGACAGCTTAAGGATTAAGC
ATGCTCCTTCGAAGCTTGACGTATTGGATGATGAAGGTGCAAGCACATTGAGAAGGTTTA
TTCTTTCATACTATGATATCAGGGCAGTCATATTGGAGCTTGGAATGAAGCTTGATATGA
TGAGACACCTTGATTACCTCCCTAAGTATTTGCAGCAGATAAAATCTCTCGAAGTCATGA
AGATATATGCCCCACTTGCACATGCTGTTGGAGCGGGTAATCTGTCACTAGAATTAGAGG
ATCTTTCATTTCGTTACTTGTTTCCTCATTCCTATGACCATGTTGATCAGTGGTTGAGAA
GCCAAGAAGGTGACTGCAAGGCTATAATAAATTTGTACAAGGAGCAGTTGCTTCAAGCAC
TGCAGGCTGATAATGAGTTGAGGAGGATTGCACAGGACATCTCAATTCAAGGGAGGTATA
AAAGCCGTTTCAGTACTATGAAGAAGCTAGTAAAAGATGGACGGAAGCCAGAAGAAGTTA
AAGACATTCTAGGTTTGAGGGTAATCTTGGAGCCTCGGTGTGGTGGCAATTCATCTGATT
GGGGCCCTAGGGCTTGCCACAGGACACATGAAATTATTCAAGCTATGTGGAAGGAAATCC
CGGGTAGAACAAAAGATTATATAACTCACCCAAAACGAAATGGTTACCAGAGCTTGCATG
TGGCCATCGATGTCAGTGAACCTGGGAAGGTGAGGCCATTAATGGAGGTACAGATACGCA
CCAAGGAGATGCATAGGTTTGCTGTTGGTGGAGAGGCATCTCACTCTCTCTACAAGGGTG
GTCTTACTGATCCTGGAGAGGCTAAAAGGCTCAAGACTATTATGTTGGCGGCAGCGGAGT
TAGCAGCTCTGCGCCTACGAGACCTACCAGGCAGTGACCACGTAGTTGGGAACTGCAAGA
ACCCGGCTTTCTGTCAGCTTGACAAAAATGGGGATGGGAGAATCAGCATCGAGGAGCTCA
CTGAGGTGATGGAGGATCTAGGTGCTGGAGGCGAAGACGCAACAGAGCTCATGCATCTTC
TTGATGCAAACAGTGACGGCTCCTTGAGCTCTGACGAATTCGAGTCATTCCAGAGACAGA
TCGAAGTGATGAGAAACTTGGAGGACGATGATAACCACTATAGGAAGATCTTGAAGGAGA
AGCTGCACACGATCGACAGTGCAGGTCTCATCCATGTGTACCGCAAGGAGCTCAGTGACA
AATTGCTTGTGGGCTGACCTGGCAGCCATCTTATTGTTGTTTTGTATGTATACCACACTG
AGAGGTGACTCCAGCACTGATCTGTAAATAGTCGTTGAACGTACGTGGTATCCAGCAATA
TTACGGTAGTGAATTTATAGGGTGGATTGCGAGATCAAGAAATGAAGGTAAATATATAAG
AGATTC