Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037476_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:126489261:126491991:1 gene:Zm00001d037476 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

ATGGCCGATGGGCCAGTGACCGCGACCTCCTCCATGGCGGTCCCCTCCGCGCGCCGTAAC
CGGGCGCTCCTACCGACAGTCTCCGTGGCTCGCGAGCCGGCGCGCGCGTGGGCAGCGGCT
GGCGCGGAGGGAAGGGCGCGGAGAGGGAAGGAGGCTGAGGTGGAGGACGAGAAGGAAGCG
GGGAGGCGGCGGAAGGAGGAGGTGAACCGGAAGATCGCGTCCCGGAAAGCGCTGTCCGTC
ATCCTCCGGCGCGAGGCCACCAAAGCGGTTCTCGACAAGCGTAAGCCCGGCAAGGGCACG
CGCCGCCTCCTCCCCGGCACCGTCCTCGAGGCCCTGCACGACCGCGTCGCGGCCCTCAGA
TGGGACTCCGCCCTCAAGGTGTTCGAGCTAATGCGGGACCAGGTGTGGTACAAGCCTCAC
ATAGGCATATACATCAAGCTCATAACCATGCTCGGCAAGTGCAAGCAGCCGGAGAAGGCG
CACCAGCTCTTCCAGGCGATGATTGACGAGGGTTGCGCGCCCAACCTCCAGTCCTACACC
GCCCTAGTCTCCACGTATAGCAGGAGCGGCCGCTTCCGTGAAGCATTCGACCTGCTTGAC
CGGATGAAGGACACTCCAGGTTGCCAGCCTGATGTGCAGACATACTCGATTCTCATTAAG
TCATGCTTACATGCTTATGATTTTGAGAAGGTGAAGAGTTTGCTGGCTGATATGGCACGA
GCGGGCATTCCGCCTAACACCGTCACCTATAATACATTGATCGATGCCTATGGGAAAGCA
GGAAGGTTTGCTGAGATGGAATCAACTCTTCTGAAGATGTTGTCACAAAATTGCAAGCCT
GATGTGTGGACAATGAATTCTACTCTCAGAGCTTTTGGCAGTAGTGGTCAGATTGAGACA
ATGGAAAGCTGCTACGAGAAGTTCCAGGCCTCTGGTATTGTCCCAAACATTAAGACCTAC
AATATCTTACTCGATTCCTATGGCAAAGCCAAAATGTATGAGAAGATGGGAGCTGTGATG
GAATACATGCAGAAGTACTACTATTCTTGGACAATAGTCACATACAATGTAGTGATTGAT
GCATTTGGAAGGGCCGGAGACCTCGAGCAGATGGAATATATATTTAGGCTAATGAAATCT
GAGCGTATAAAGCCCAATTGTGTTACACTCTGTTCAGTGGTTAGAGCATATGGAAGAGCT
GGGGAAGTTAAGAAAATAAAGACAGCGTTGAGAATCATTGAGAATTCTGACATAACATTG
GATATTGTGTTCTTCAACTGTTTGGTGGATGCATATGGGAGGGTGGGGTGCTTGGCAGAG
ATGTGGGATATTCTTGATTTGATGAAGGAGCATAGATGCAAACCAGACAAGGTAACCTGC
ACTACCATGATCAAATGGTTTCTCATCAAAGGAATCGACGATCATCGTGTTCAGTACCTA
CGTGATCTTAAAGATGGGCGAGCAAAAGATGATACATAG

Peptide Sequence

PEP ID

Zm00001d037476_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:126489261:126491991:1 gene:Zm00001d037476 transcript:Zm00001d037476_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

MADGPVTATSSMAVPSARRNRALLPTVSVAREPARAWAAAGAEGRARRGKEAEVEDEKEA
GRRRKEEVNRKIASRKALSVILRREATKAVLDKRKPGKGTRRLLPGTVLEALHDRVAALR
WDSALKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYT
ALVSTYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMAR
AGIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIET
MESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVID
AFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSDITL
DIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCTTMIKWFLIKGIDDHRVQYL
RDLKDGRAKDDT

Transcript Sequence

Transcript ID

Zm00001d037476_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:126489261:126491991:1 gene:Zm00001d037476 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

GCCGGCAGGTCAAGACAAAAATCTCATCACTGTGTACTGTAGTTCAGCGGCAGCAAAGCT
CGCTCTGATTTCGAGCTCGCCAATGGCCGATGGGCCAGTGACCGCGACCTCCTCCATGGC
GGTCCCCTCCGCGCGCCGTAACCGGGCGCTCCTACCGACAGTCTCCGTGGCTCGCGAGCC
GGCGCGCGCGTGGGCAGCGGCTGGCGCGGAGGGAAGGGCGCGGAGAGGGAAGGAGGCTGA
GGTGGAGGACGAGAAGGAAGCGGGGAGGCGGCGGAAGGAGGAGGTGAACCGGAAGATCGC
GTCCCGGAAAGCGCTGTCCGTCATCCTCCGGCGCGAGGCCACCAAAGCGGTTCTCGACAA
GCGTAAGCCCGGCAAGGGCACGCGCCGCCTCCTCCCCGGCACCGTCCTCGAGGCCCTGCA
CGACCGCGTCGCGGCCCTCAGATGGGACTCCGCCCTCAAGGTGTTCGAGCTAATGCGGGA
CCAGGTGTGGTACAAGCCTCACATAGGCATATACATCAAGCTCATAACCATGCTCGGCAA
GTGCAAGCAGCCGGAGAAGGCGCACCAGCTCTTCCAGGCGATGATTGACGAGGGTTGCGC
GCCCAACCTCCAGTCCTACACCGCCCTAGTCTCCACGTATAGCAGGAGCGGCCGCTTCCG
TGAAGCATTCGACCTGCTTGACCGGATGAAGGACACTCCAGGTTGCCAGCCTGATGTGCA
GACATACTCGATTCTCATTAAGTCATGCTTACATGCTTATGATTTTGAGAAGGTGAAGAG
TTTGCTGGCTGATATGGCACGAGCGGGCATTCCGCCTAACACCGTCACCTATAATACATT
GATCGATGCCTATGGGAAAGCAGGAAGGTTTGCTGAGATGGAATCAACTCTTCTGAAGAT
GTTGTCACAAAATTGCAAGCCTGATGTGTGGACAATGAATTCTACTCTCAGAGCTTTTGG
CAGTAGTGGTCAGATTGAGACAATGGAAAGCTGCTACGAGAAGTTCCAGGCCTCTGGTAT
TGTCCCAAACATTAAGACCTACAATATCTTACTCGATTCCTATGGCAAAGCCAAAATGTA
TGAGAAGATGGGAGCTGTGATGGAATACATGCAGAAGTACTACTATTCTTGGACAATAGT
CACATACAATGTAGTGATTGATGCATTTGGAAGGGCCGGAGACCTCGAGCAGATGGAATA
TATATTTAGGCTAATGAAATCTGAGCGTATAAAGCCCAATTGTGTTACACTCTGTTCAGT
GGTTAGAGCATATGGAAGAGCTGGGGAAGTTAAGAAAATAAAGACAGCGTTGAGAATCAT
TGAGAATTCTGACATAACATTGGATATTGTGTTCTTCAACTGTTTGGTGGATGCATATGG
GAGGGTGGGGTGCTTGGCAGAGATGTGGGATATTCTTGATTTGATGAAGGAGCATAGATG
CAAACCAGACAAGGTAACCTGCACTACCATGATCAAATGGTTTCTCATCAAAGGAATCGA
CGATCATCGTGTTCAGTACCTACGTGATCTTAAAGATGGGCGAGCAAAAGATGATACATA
GGAGTGAAAACAAGAAAAACTCTTGGAGCAGTGACTTTCGTATATATTTTTTTAAAGGAA
CGAATGGATCTTTCGGAGCCTCGGTTTACAATTACATACATGCATCGATCTCACTGACTT
ACTACTGAATCAAACATTACTCAGATACCATGAGTCACACTGCTCACTGACTTATGTGCT
GCAAGAGCTATATAGGGACATCTTAAAAAAAAGCTACTAATGGTTGATAAGGTTGAAGCA
AATTTTGGTGAGTGGCCAATAATGAACAATACTGGAATATAAAGATGATACTGGGAAAAG
GGACACGTTTTAGACGCAGAAGAGACAAGACATGCTGGTGAAATTGATCAGATTCTGCTA
TCTGTTCTGACTTGATGTATCGACACAGCTGAACATGACTTGTACTGTTGACTAGTGCAA
AGGCTTTACAGCCTGTTTGGTATCGACACCCCCTCACTCTTTACTTTTTGTATGATTTGT
GGAATGGAATAAGTTGTTCCATCACTATCTGTAACGCATAAAATTCTATTTTGGGATCTG
TAAGAGTTTCTCTAAAAAGATTAAGATGACTCTT