Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037400_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:124492146:124493697:-1 gene:Zm00001d037400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartic proteinase nepenthesin-2
Sequence

ATGGCCGTTCCATCTCTTCTCCTCTGCCTGCTGCTCCTTGTTTCGCCCCATCTTGGTTGC
TCCTACCACACCAGCTACACCCGTGACGGCAGGCACCACGTTCTCCGTTCCAACCGAGAC
CCACGGCGGCGACCGAAACCGACCTGTTCCTCCGCACATTCTGCACATTCCGCAGTGCCA
GTGGTGCACCGGCTGAGCCCATGCTCCCCTCTCGCCGGAGCCGCACGGAACCAGCAGCCG
GAAAGGCGATCCGTGGCCGACGTCCTCCACCGCGACGCGCTCCGCCTCCGCTCCCTGCTG
CACAGGGAGGAAGACAACCACCGCACCCCTGCACCCGCAGCACCTCCTGGAGGAGGGGTC
TCGATCCCCAGCAGAGGCGAACCCATCGAGGAGCTGCCCGGTGCGTTCGAGTACCACGTC
GTCGCTGGCTTCGGCACTCCGATGCAGAAGCTCCCCGTGGGATTCGACACGACCACCACC
GGTGCCACGCTGCTACAGTGCACGCCGTGCGGCTCCGGCGCCGACCACGCCTTCGACCCA
TCCGCGTCGTCCTCTGTCTCTCAAGTCCCCTGCGGCTCGCCGGACTGCCCGTTCCACGGC
TGCTCCGGACGACCCAGCTGCACCCTCAGCGTCTCCTTCAACAACACGTTGCTGGGCAAC
GCGACGTTCTTCACCGACACGCTGACCCTGACGCCGTCGTCGTCGGCCACGGTGGACAAG
TTCAGGTTCGCGTGTCTCGAGGGCATCGCGCCGGGCCCGGCCGAGGATGGCTCTGCTGGC
ATCCTCGACCTCAGCCGGAACAGCCACTCCCTGCCGTCCCGCCTCGTCGCCTCCTCTCCG
CCGCACGCGGTCGCCTTCTCCTACTGCCTGCCGGCCTCCACGGCCGATGTAGGCTTCCTC
TCGCTCGGCGCCACCAAGCCGGAACTCTTGGGACGCAAGGTGAGCTACACCCCACTGAGG
GGAAGCCCCAGCAACGGGAACCTGTACGTCGTGGATCTCGTCGGGCTGGGCCTCGGCGGC
CCGGACCTCCCGATCCCGCCCGCCGCCATCGCCGGAGACGACACCATCCTCGAGCTGCAC
ACGACGTTCACCTACCTCAAGCCCCAGGTGTACAAGGTCCTCCGCGACAGCTTCCGCAAG
TCCATGTCGGAGTACCCTGCCGCGCCGCCGCTCGGAAGCCTGGACACGTGCTACAACTTC
ACCGGGTTGGACGCTTTCTCCGTGCCGGCCGTGACGCTCAAGTTCGCCGGCGGGGCAGAC
GTCGACCTCTGGATGGATGAAATGATGTACTTCACCGACCCCGATAACCACTTCTCCATT
GGGTGCCTCGCGTTTGTAGCGCAGGATGATGATTGTGATGGCGGCACCGTGATTGGGAGC
ATGGCGCAGATGTCGACGGAGGTGGTGTACGACGTGCGCGGAGGGAAGGTTGGGTTCGTC
CCATACCGCTGCTGA

Peptide Sequence

PEP ID

Zm00001d037400_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:124492146:124493697:-1 gene:Zm00001d037400 transcript:Zm00001d037400_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartic proteinase nepenthesin-2
Sequence

MAVPSLLLCLLLLVSPHLGCSYHTSYTRDGRHHVLRSNRDPRRRPKPTCSSAHSAHSAVP
VVHRLSPCSPLAGAARNQQPERRSVADVLHRDALRLRSLLHREEDNHRTPAPAAPPGGGV
SIPSRGEPIEELPGAFEYHVVAGFGTPMQKLPVGFDTTTTGATLLQCTPCGSGADHAFDP
SASSSVSQVPCGSPDCPFHGCSGRPSCTLSVSFNNTLLGNATFFTDTLTLTPSSSATVDK
FRFACLEGIAPGPAEDGSAGILDLSRNSHSLPSRLVASSPPHAVAFSYCLPASTADVGFL
SLGATKPELLGRKVSYTPLRGSPSNGNLYVVDLVGLGLGGPDLPIPPAAIAGDDTILELH
TTFTYLKPQVYKVLRDSFRKSMSEYPAAPPLGSLDTCYNFTGLDAFSVPAVTLKFAGGAD
VDLWMDEMMYFTDPDNHFSIGCLAFVAQDDDCDGGTVIGSMAQMSTEVVYDVRGGKVGFV
PYRC

Transcript Sequence

Transcript ID

Zm00001d037400_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:124492146:124493697:-1 gene:Zm00001d037400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartic proteinase nepenthesin-2
Sequence

CCGGCCTATATATATGGCAGGCTCTTGCTACCCTTCTCTTCAACAATACGTACCGAGAGC
TAGCTAGAGATCGAGCTAGCACTATAGCAGCAGCAGTATGGCCGTTCCATCTCTTCTCCT
CTGCCTGCTGCTCCTTGTTTCGCCCCATCTTGGTTGCTCCTACCACACCAGCTACACCCG
TGACGGCAGGCACCACGTTCTCCGTTCCAACCGAGACCCACGGCGGCGACCGAAACCGAC
CTGTTCCTCCGCACATTCTGCACATTCCGCAGTGCCAGTGGTGCACCGGCTGAGCCCATG
CTCCCCTCTCGCCGGAGCCGCACGGAACCAGCAGCCGGAAAGGCGATCCGTGGCCGACGT
CCTCCACCGCGACGCGCTCCGCCTCCGCTCCCTGCTGCACAGGGAGGAAGACAACCACCG
CACCCCTGCACCCGCAGCACCTCCTGGAGGAGGGGTCTCGATCCCCAGCAGAGGCGAACC
CATCGAGGAGCTGCCCGGTGCGTTCGAGTACCACGTCGTCGCTGGCTTCGGCACTCCGAT
GCAGAAGCTCCCCGTGGGATTCGACACGACCACCACCGGTGCCACGCTGCTACAGTGCAC
GCCGTGCGGCTCCGGCGCCGACCACGCCTTCGACCCATCCGCGTCGTCCTCTGTCTCTCA
AGTCCCCTGCGGCTCGCCGGACTGCCCGTTCCACGGCTGCTCCGGACGACCCAGCTGCAC
CCTCAGCGTCTCCTTCAACAACACGTTGCTGGGCAACGCGACGTTCTTCACCGACACGCT
GACCCTGACGCCGTCGTCGTCGGCCACGGTGGACAAGTTCAGGTTCGCGTGTCTCGAGGG
CATCGCGCCGGGCCCGGCCGAGGATGGCTCTGCTGGCATCCTCGACCTCAGCCGGAACAG
CCACTCCCTGCCGTCCCGCCTCGTCGCCTCCTCTCCGCCGCACGCGGTCGCCTTCTCCTA
CTGCCTGCCGGCCTCCACGGCCGATGTAGGCTTCCTCTCGCTCGGCGCCACCAAGCCGGA
ACTCTTGGGACGCAAGGTGAGCTACACCCCACTGAGGGGAAGCCCCAGCAACGGGAACCT
GTACGTCGTGGATCTCGTCGGGCTGGGCCTCGGCGGCCCGGACCTCCCGATCCCGCCCGC
CGCCATCGCCGGAGACGACACCATCCTCGAGCTGCACACGACGTTCACCTACCTCAAGCC
CCAGGTGTACAAGGTCCTCCGCGACAGCTTCCGCAAGTCCATGTCGGAGTACCCTGCCGC
GCCGCCGCTCGGAAGCCTGGACACGTGCTACAACTTCACCGGGTTGGACGCTTTCTCCGT
GCCGGCCGTGACGCTCAAGTTCGCCGGCGGGGCAGACGTCGACCTCTGGATGGATGAAAT
GATGTACTTCACCGACCCCGATAACCACTTCTCCATTGGGTGCCTCGCGTTTGTAGCGCA
GGATGATGATTGTGATGGCGGCACCGTGATTGGGAGCATGGCGCAGATGTCGACGGAGGT
GGTGTACGACGTGCGCGGAGGGAAGGTTGGGTTCGTCCCATACCGCTGCTGA