Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037321_T033
CDS Infomation

cds chromosome:B73_RefGen_v4:6:121008187:121016251:1 gene:Zm00001d037321 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy2 description:Retrovirus-related Pol polyprotein LINE-1
Sequence

ATGGATTGGATCAATGCGATATGCCTGCTGTTCAGTTCAGGCTCAGATAGAACTGAAAAG
TCAGATGATAGTAACACACCAAATAGCTATCAGTCTGGTGAACCTTATTCATCATCTTTA
TTTATCGAGTTGGCTGATGTTGCTGTTAGCTATGAACCTCATTTTAAACATTCCACTCTC
AGTGCTGGAGCAGCCGACCGCAAGTTTTTCTCATGCCTTTTAGCTGCATCATCATTTAAA
CTCCATAATAAATCTGCATCAGCCTCTGCAGCTACTGATTTTGATATCCAATTACGTGAT
CTTGGAGTCCTCATTTCTCAATCATCTGGTTCAACAAATGGTACTTGCAGTTATGGTGTA
GATTACCTTCGTCAAGCAGGTTATACTAAGGTTGTCCAGAACACATTCATTGAAGCTTCT
CTAAGATTAGATTCTTCCTTTTGGAAGCTTGAAATATCTGATTCCCAATTTGACATTGGT
ACATGTCATGACACAACTTATGGTCTTATTGGTTTGGGATCTCAACTCCAGCAGCTATAT
GGTCCAGATATGCAGGATGCTTTAGATCATCTGCAGTCTAGGTGGAATAGTGTTCAGCAA
GCAAACAAGCAAAATATGGCTGCTGATGCATCAGACAAGTCTGAGAGCAGTTTGGAGATT
TTGGTCGATTCTGGGGATTACCAGTCAGATGGACTTCTTGATGATATTATTGAGAATGCT
TTTAACACAGAGGATTGCATGGACACCAATTTTTGGGAGAACAATTACCATCACTTATTT
AGTAGCAGTGAGACGGATGATGGATTTGAGCTGAATGCGGCCACTTCACATGTATTTCCT
ATATCTACTCCAGAAGGCAATGTTACTCAAATATCACTAGAACAGAACGTCTGTCCTGAT
CAAATCATTGATTCATATTGTGTGCCTGAATTTCATCAATCATTATCAACTCTATGTGAT
GAAGAGCATAAATGTACATCTGGTGACAATTCTCATAGAACCCTGGAAAGTGAAGATGCT
GGATGGTATAACAATGTTCCCTTAACAATAGTTGAGAATCATGTTTTGAAAAAGAAAAAC
GAGCAAGTACTTCAACACAAAGTGTCTTCTGTTTGCAGTTTGAATCCTGATGAATATTGT
AATCTGAAAGGAAAGGTTCATATTCATGATATAGATGTAAAGTGGCGGATGTATGCTGGA
GATGACTGGTTATTACCTCAGAAAGATTTGACTAGCTTAACATGCACAGATGGAAGAAAT
AGGAGCTCTTCACTGGAATTTACTGTGAGAGGGCTCAATATCCAAGTTGACATGTATCCA
AATGGGGATGTTTCTATATCTAGGCTATCTGTAGCTGCTGAGGACATAACTCTTTGTGAT
CAAAGTATCCATGCTCCATGGAAACTGGTTCTTGGATGTTACAACTCAAAGGATTACCCA
AGAGAGTCATGCTCCAGTGCATTCAGGTTAGAATTGGAGTCTGTGAGGCCGGAGCCACAG
GCTCCTTTGGAAGACTACAGGCTCCATCTTGAGATTTTGCCTCTACAGTTGCATCTTGAT
CAAGAGCAACTTAACTTCCTAATAAATTTCTTCAAGAATGATTCATGTAACAATGATCCT
CATTTGCATTGCGAAAATGATACTGTTGATGTGAAGAGCACAAGCAATGGAAGCAATATG
GTTGTGGATGAGGCATTACTTCCTTTCTTTCAGAAATTTGACGTAAAGCCACTTATTCTG
CACATTAATTATATACCCCGTCAGTTTGACCCGATTGCCCTAAGCAAGGGAAATTACGCA
GAACTTCTCAACATTCTTCCATGGAAGGGAATTGATTTGAAGCTTAAGCATGTTTCTGCA
ATGGGCATTTACGGATGGAACAGCATAGGTGATACGGTAGCAGCGGAATGGTTGGAAGAC
ATTTCTAAAAATCAGGTGCACAAATTGCTAAAAGGGCTTCCTCCAATAAGATCACTAGTT
GCTGTTGGTTCAGGGACCAGAAAGTTGGTCTCGTTGCCCATCAAAAGCTACAAGAAGGAT
CGGAAATTGCTCAAGGGAATGCAAAGAGGCGCAGTTGCTTTTATTAGAAGTGTTACCATT
GAGGCAGTAGGGCTTGGAGTCCATTTGGCTGCAGGAGCTCATGATATGCTTGTGAAGACA
GAATGCGCCCTTACAACTGTTCCACCACCTTTAGCCTCATGTGAAGTGAAACGAACAAAG
CACAACATTAGAGCTAACCAACCTGAAAGTGCACAGCAAGGAATGAAACAGGCATATGAA
AGTTTAACTGACGGGTTTGGAAGAACTTCCTCTGCTATCATTGGCAATCCTATTAAAGTT
TATAACCGAGGGGCTGGTGTCGGATCAGTTCTGGCTACTGCAATCTGTGGAGCACCAGCT
GCTGCAGTAGCTCCAATCTCAGCATCTGCTCGTGCTTTACATTATGCACTTCTTGGGCTA
AGGAACAGGGACCCTCCCAAGCATAGACGTCATTGGTGGTCGGTTCATTCTTTGGCGAGC
CTTACACCATCTCCCTGA

Peptide Sequence

PEP ID

Zm00001d037321_P033
PEP Infomation

pep chromosome:B73_RefGen_v4:6:121008187:121016251:1 gene:Zm00001d037321 transcript:Zm00001d037321_T033 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy2 description:Retrovirus-related Pol polyprotein LINE-1
Sequence

MDWINAICLLFSSGSDRTEKSDDSNTPNSYQSGEPYSSSLFIELADVAVSYEPHFKHSTL
SAGAADRKFFSCLLAASSFKLHNKSASASAATDFDIQLRDLGVLISQSSGSTNGTCSYGV
DYLRQAGYTKVVQNTFIEASLRLDSSFWKLEISDSQFDIGTCHDTTYGLIGLGSQLQQLY
GPDMQDALDHLQSRWNSVQQANKQNMAADASDKSESSLEILVDSGDYQSDGLLDDIIENA
FNTEDCMDTNFWENNYHHLFSSSETDDGFELNAATSHVFPISTPEGNVTQISLEQNVCPD
QIIDSYCVPEFHQSLSTLCDEEHKCTSGDNSHRTLESEDAGWYNNVPLTIVENHVLKKKN
EQVLQHKVSSVCSLNPDEYCNLKGKVHIHDIDVKWRMYAGDDWLLPQKDLTSLTCTDGRN
RSSSLEFTVRGLNIQVDMYPNGDVSISRLSVAAEDITLCDQSIHAPWKLVLGCYNSKDYP
RESCSSAFRLELESVRPEPQAPLEDYRLHLEILPLQLHLDQEQLNFLINFFKNDSCNNDP
HLHCENDTVDVKSTSNGSNMVVDEALLPFFQKFDVKPLILHINYIPRQFDPIALSKGNYA
ELLNILPWKGIDLKLKHVSAMGIYGWNSIGDTVAAEWLEDISKNQVHKLLKGLPPIRSLV
AVGSGTRKLVSLPIKSYKKDRKLLKGMQRGAVAFIRSVTIEAVGLGVHLAAGAHDMLVKT
ECALTTVPPPLASCEVKRTKHNIRANQPESAQQGMKQAYESLTDGFGRTSSAIIGNPIKV
YNRGAGVGSVLATAICGAPAAAVAPISASARALHYALLGLRNRDPPKHRRHWWSVHSLAS
LTPSP

Transcript Sequence

Transcript ID

Zm00001d037321_T033
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:121008187:121016251:1 gene:Zm00001d037321 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy2 description:Retrovirus-related Pol polyprotein LINE-1
Sequence

ACGACTTAGTAAAAAGGATTGTGAGTTACTAAATAAGCTGCTAGATCATGTCATTAAGGG
GATATCAAATGAACAAACAAGCATTTCTGGAAATTCCAAGGACCAATCTGTTCTGATCAA
TGATACCTTCATTCAAACGTCTGTCCTTTTTGAATGCAGTATATTGGAAATTTGCACTGA
ATTGAATGAAACAGTGGAAGTTGGTCCTTTATTACAGGCAGAACTAAAAGGATCCTGGAA
CTCTGTTAAGTTGAATGTTTCAAAATTTTGTCTTTTCTCCTGTTCAAATGTTGGAGGCCT
CAACAATGCCAGTTTTCTTTGGGTGAATCATGGTGAAGGTGAGCTTTGGGGTTCTGTTAG
TGCTAAGAATGATAAAATCCCTGGAGAAAGTAAAGATTTTCTTATAGTGGCTTGCAAGGA
CTCTGCCTGCAGGCGGGGTGATGGTGAAGGTACTAATGTGCTGTCTATTGGTGCTGCTGG
CTGTTCTGTGACCCACATCAGGAACCCAAAGCTAAAAGAGAATTACACTTCTGTTGATGT
TCGTTCTGGCACAATTGTAGCACCTGGTGGCCGTATGGATTGGATCAATGCGATATGCCT
GCTGTTCAGTTCAGGCTCAGATAGAACTGAAAAGTCAGATGATAGTAACACACCAAATAG
CTATCAGTCTGGTGAACCTTATTCATCATCTTTATTTATCGAGTTGGCTGATGTTGCTGT
TAGCTATGAACCTCATTTTAAACATTCCACTCTCAGTGCTGGAGCAGCCGACCGCAAGTT
TTTCTCATGCCTTTTAGCTGCATCATCATTTAAACTCCATAATAAATCTGCATCAGCCTC
TGCAGCTACTGATTTTGATATCCAATTACGTGATCTTGGAGTCCTCATTTCTCAATCATC
TGGTTCAACAAATGGTACTTGCAGTTATGGTGTAGATTACCTTCGTCAAGCAGGTTATAC
TAAGGTTGTCCAGAACACATTCATTGAAGCTTCTCTAAGATTAGATTCTTCCTTTTGGAA
GCTTGAAATATCTGATTCCCAATTTGACATTGGTACATGTCATGACACAACTTATGGTCT
TATTGGTTTGGGATCTCAACTCCAGCAGCTATATGGTCCAGATATGCAGGATGCTTTAGA
TCATCTGCAGTCTAGGTGGAATAGTGTTCAGCAAGCAAACAAGCAAAATATGGCTGCTGA
TGCATCAGACAAGTCTGAGAGCAGTTTGGAGATTTTGGTCGATTCTGGGGATTACCAGTC
AGATGGACTTCTTGATGATATTATTGAGAATGCTTTTAACACAGAGGATTGCATGGACAC
CAATTTTTGGGAGAACAATTACCATCACTTATTTAGTAGCAGTGAGACGGATGATGGATT
TGAGCTGAATGCGGCCACTTCACATGTATTTCCTATATCTACTCCAGAAGGCAATGTTAC
TCAAATATCACTAGAACAGAACGTCTGTCCTGATCAAATCATTGATTCATATTGTGTGCC
TGAATTTCATCAATCATTATCAACTCTATGTGATGAAGAGCATAAATGTACATCTGGTGA
CAATTCTCATAGAACCCTGGAAAGTGAAGATGCTGGATGGTATAACAATGTTCCCTTAAC
AATAGTTGAGAATCATGTTTTGAAAAAGAAAAACGAGCAAGTACTTCAACACAAAGTGTC
TTCTGTTTGCAGTTTGAATCCTGATGAATATTGTAATCTGAAAGGAAAGGTTCATATTCA
TGATATAGATGTAAAGTGGCGGATGTATGCTGGAGATGACTGGTTATTACCTCAGAAAGA
TTTGACTAGCTTAACATGCACAGATGGAAGAAATAGGAGCTCTTCACTGGAATTTACTGT
GAGAGGGCTCAATATCCAAGTTGACATGTATCCAAATGGGGATGTTTCTATATCTAGGCT
ATCTGTAGCTGCTGAGGACATAACTCTTTGTGATCAAAGTATCCATGCTCCATGGAAACT
GGTTCTTGGATGTTACAACTCAAAGGATTACCCAAGAGAGTCATGCTCCAGTGCATTCAG
GTTAGAATTGGAGTCTGTGAGGCCGGAGCCACAGGCTCCTTTGGAAGACTACAGGCTCCA
TCTTGAGATTTTGCCTCTACAGTTGCATCTTGATCAAGAGCAACTTAACTTCCTAATAAA
TTTCTTCAAGAATGATTCATGTAACAATGATCCTCATTTGCATTGCGAAAATGATACTGT
TGATGTGAAGAGCACAAGCAATGGAAGCAATATGGTTGTGGATGAGGCATTACTTCCTTT
CTTTCAGAAATTTGACGTAAAGCCACTTATTCTGCACATTAATTATATACCCCGTCAGTT
TGACCCGATTGCCCTAAGCAAGGGAAATTACGCAGAACTTCTCAACATTCTTCCATGGAA
GGGAATTGATTTGAAGCTTAAGCATGTTTCTGCAATGGGCATTTACGGATGGAACAGCAT
AGGTGATACGGTAGCAGCGGAATGGTTGGAAGACATTTCTAAAAATCAGGTGCACAAATT
GCTAAAAGGGCTTCCTCCAATAAGATCACTAGTTGCTGTTGGTTCAGGGACCAGAAAGTT
GGTCTCGTTGCCCATCAAAAGCTACAAGAAGGATCGGAAATTGCTCAAGGGAATGCAAAG
AGGCGCAGTTGCTTTTATTAGAAGTGTTACCATTGAGGCAGTAGGGCTTGGAGTCCATTT
GGCTGCAGGAGCTCATGATATGCTTGTGAAGACAGAATGCGCCCTTACAACTGTTCCACC
ACCTTTAGCCTCATGTGAAGTGAAACGAACAAAGCACAACATTAGAGCTAACCAACCTGA
AAGTGCACAGCAAGGAATGAAACAGGCATATGAAAGTTTAACTGACGGGTTTGGAAGAAC
TTCCTCTGCTATCATTGGCAATCCTATTAAAGTTTATAACCGAGGGGCTGGTGTCGGATC
AGTTCTGGCTACTGCAATCTGTGGAGCACCAGCTGCTGCAGTAGCTCCAATCTCAGCATC
TGCTCGTGCTTTACATTATGCACTTCTTGGGCTAAGGAACAGGGACCCTCCCAAGCATAG
ACGTCATTGGTGGTCGGTTCATTCTTTGGCGAGCCTTACACCATCTCCCTGAAACTGGTT
TTAGGAGCTCCTTTGCCAGTCTCGTCCAATGGTGAGGTGCAAACTTGTACAGTGTGTACA
GATCGTAAGACAGATTATATTTGGCATCAAAGCCACACACTAAATTGACACATAAGGGTT
TAATTAGCACTCATATTTTGCACCACGAAGGCACGTGGAAGTTTTGTAATCCCTCTTCGT
TGCATGACTGCCCCCGATGTACATAATGTGGTTGCTGTGTGGGTTGTGCGGATGTAAATT
ATCTTCATGACTGTCCCCAATGTACATAATGTGGCTGCTGCGTGAGTTGTGCGGATGTAA
ATATCTCTTTTGCTTTGGTTGCGTGTGCGCGCGCCTCTGGTCCGCTGTTCAAGAGTGTGT
TTTGAGCTGCTGCTGCTGGTGTCATTTGCCGCAGCCCATGAACCTGATCATTCTGGCTTT
CTAGTGTTATCACGC