Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037313_T030
CDS Infomation

cds chromosome:B73_RefGen_v4:6:120403191:120407827:-1 gene:Zm00001d037313 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:JUMONJI-transcription factor 7 description:Putative lysine-specific demethylase JMJ16
Sequence

ATGCTCTCAGCAATGATGGGAATAGAAGGCATTGCAGCCACAGTCACCGAGGACCCTGAA
CCCTCAATTCCTCCAGGATTTGGACCTTTTGCTGCCTCGGCATCATGGGGAATCCAAAAC
GATGTTAAACCTGCTGATGATCATTCTAGTTCTGTTTTAGCATTACAGAGCATCGACGAC
GATGTGGAAATTTTGGAATATCTATCCAGTTCAGTGGATCACCAGAGTGACACAGGTTGC
TGTATTTCTGGGAGCAATACCTGTAGGAAATCACTGCGTAATAGACCTCCAATAGATTAT
AGCCGCTTTGATCAGATTGCAGATGAAGATTCTGATGCTGAAGTAGCAGACAAGGGTGTA
AATGCAGTGAAACACAGACAACAATTCCCTAAAGGAGTACTTCGAGGATGTCCAGAATGT
GCCAATTGTCAAAAGGTTATTGCAAGATGGAATCCATCTGGTGCACGTAGGCCTGTTCTT
GATGAGGCTCCTGTTTACTATCCTACCGAGGAGGAATTTCAGGACACATTAAAATACATT
GAGATTATCCGCCCAACAGCAGAACCATATGGAATATGCCGTATTGTTCCACCAGCTTCA
TGGAAGCCTCCATGCCTTCTTAAAGAGAAAAACATTTGGGAGTGCTCAAAATTTTCTACT
CGGGTACAGAAGGTTGACAAGCTCCAAAATCGTAAATCGCCCAAGAAGAGCAGAAGAGGT
GGAATGATGAAGAAGCGTAGAAAGATTTCGGAGACTGAAGAAAACAATCACCATCAAATT
GGAATGCAGCAAAACCAAGAGAGATTTGGATTTGAACCAGGACCAGAGTTCACACTACAG
ATGTTTCAGAAGTATGCAGATGACTTCAGTGATCAGTATTTTATGAAAGATAAATGCAGA
GATTCACCACCATCAGTGGAAGATATTGAAGGCGAGTATTGGCGCATAGTTGAAAGACCG
ACAGAGGAGATAGAGGTAATATATGGTGCCGATTTGGAGACTGGAACTTTTGGCAGTGGG
TTTCCAAAGTTATGTCCTGAAATGAAATCTGATGTGGAGGATAAATATGCACAATCTGGG
TGGAATCTAAATAACCTGCCTAGACTACAAGGTTCGGTTCTTTCTTTTGAAGGCGGTGAC
ATTTCTGGTGTTTTAGTGCCTTGGCTTTATGTCGGCATGTGTTTTTCATCTTTCTGCTGG
CATGTTGAAGATCATCATTTGTACTCACTGAACTACATGCATTGGGGTGCTCCAAAGATG
TGGTATGGAGTTCCAGGGAAGGATGCTGTGAATTTGGAGGCTGCAATGAGGAAACATCTT
CCTGAGTTATTTGAGGAGCAACCTGATTTGCTTCACAACTTAGTTACTCAGTTCTCACCA
TCATTGCTTAAATCTGAAGGAGTACCAGTCTACCGATGTGTTCAGCATGAGGGAGAGTTT
GTCCTGACGTTCCCACGGGCATACCATGCTGGTTTTAATTGTGGCTTCAATTGTGCAGAA
GCTGTTAATGTGGCACCCATTGATTGGTTGCCGGTTGGACAAAATGCTGTTGATCTTTAT
CGTGAACAAGCTCGGAAAATAACTATCTCCCATGATAAGCTGTTGCTTGGGGCTGCAAGA
GAAGCAATAAGAGCTCAGTGGGACATCCTATTTCTCAAGAGGAATTCTTCTGTTAACTTG
AGGTGGAAAAGCATATGTGGACCTGATAGCACAATATGCAAGTCACTGAAGGCACGAATT
GAAATGGAGTTGGTACAAAGACAAAATATATCCTCTCCATGTCAATCTAGGAAAATGGAT
AGTGAGTTTGATTCTACTGATAGGGAATGTGCATTGTGTTACTATGATCTGCATCTTTCA
GCTTCAGGCTGTCCATGCTCCCCAGAGAAATATGCTTGCCTGGTACATGCAAAGCAGCTT
TGTTCATGCGATTGGGACAAAAGGTTTTTCCTATTTCGTTATGATGTTAATGAGTTGAAT
ATCTTAGCTGATGCTTTAGGGGGAAAGCTAAGTGCCATTCACAGATGGGGTGTCTCTGAT
CTTGGATTAAGTTTGAGCTCCTGTGTCAAACGGGAAAAGGTCCAAGATTCCAAGACTGTT
CGCAGATTAACTGATGGCCCAAGACGGTCCTACATGTCACAGGCATCAACAGTATCATTG
ATTCCTTCTTCTGTTAGCACTGAACAGAAAAAGAATGAAGATAAGACACTGGATTTAGGT
TGCCCAGGTATGAATTTACCAAAAATAAGTCCGGAGGCAAATAATCTGCGTCCTTCGACA
GAACAGATAAAATCAGAAAATCTCTCACAGCTAAAGGAACCATGTGTGAAGAATGAATTA
TCTTGTCCGACCAGCAATGGTACCAGCCAAGAACATAAAGGAGGGATTGGAGGCCACAAA
CTTGCAGCAGCAAGCATGATGGTTCTTTCTGGTCAATCATTTCCTGCAAATGCTGGTGAA
TCAGTGAGAAATGCGCATGTCTTGGCAGTATTTAAAGAGGGTAGAGACTGTACATCTTCA
CTTACACTTAGGGAGTATCATAACAGGCCAGTGTCAATGATTGATAATGGAGCTAACATG
AAGCTGGATCTGGAAAACATAGACAATTCTCATATGTTGATGTCATCACCAGACTTCAAT
GCAACTGTATGTCATTCTTACAAGGATCAAACATTCTTAACACTGGAAACTAATACCTCT
GTGATGACTGAGAAAGATAGCAGTCAGGCCCGTAATGCAAGCCAGCAGTTTGTCAGTACT
GCTTTAAGAACACAAAATGTGTCTCAGGAACCATTGTGTACCGCGATTGCT

Peptide Sequence

PEP ID

Zm00001d037313_P030
PEP Infomation

pep chromosome:B73_RefGen_v4:6:120403191:120407827:-1 gene:Zm00001d037313 transcript:Zm00001d037313_T030 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:JUMONJI-transcription factor 7 description:Putative lysine-specific demethylase JMJ16
Sequence

MLSAMMGIEGIAATVTEDPEPSIPPGFGPFAASASWGIQNDVKPADDHSSSVLALQSIDD
DVEILEYLSSSVDHQSDTGCCISGSNTCRKSLRNRPPIDYSRFDQIADEDSDAEVADKGV
NAVKHRQQFPKGVLRGCPECANCQKVIARWNPSGARRPVLDEAPVYYPTEEEFQDTLKYI
EIIRPTAEPYGICRIVPPASWKPPCLLKEKNIWECSKFSTRVQKVDKLQNRKSPKKSRRG
GMMKKRRKISETEENNHHQIGMQQNQERFGFEPGPEFTLQMFQKYADDFSDQYFMKDKCR
DSPPSVEDIEGEYWRIVERPTEEIEVIYGADLETGTFGSGFPKLCPEMKSDVEDKYAQSG
WNLNNLPRLQGSVLSFEGGDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKM
WYGVPGKDAVNLEAAMRKHLPELFEEQPDLLHNLVTQFSPSLLKSEGVPVYRCVQHEGEF
VLTFPRAYHAGFNCGFNCAEAVNVAPIDWLPVGQNAVDLYREQARKITISHDKLLLGAAR
EAIRAQWDILFLKRNSSVNLRWKSICGPDSTICKSLKARIEMELVQRQNISSPCQSRKMD
SEFDSTDRECALCYYDLHLSASGCPCSPEKYACLVHAKQLCSCDWDKRFFLFRYDVNELN
ILADALGGKLSAIHRWGVSDLGLSLSSCVKREKVQDSKTVRRLTDGPRRSYMSQASTVSL
IPSSVSTEQKKNEDKTLDLGCPGMNLPKISPEANNLRPSTEQIKSENLSQLKEPCVKNEL
SCPTSNGTSQEHKGGIGGHKLAAASMMVLSGQSFPANAGESVRNAHVLAVFKEGRDCTSS
LTLREYHNRPVSMIDNGANMKLDLENIDNSHMLMSSPDFNATVCHSYKDQTFLTLETNTS
VMTEKDSSQARNASQQFVSTALRTQNVSQEPLCTAIA

Transcript Sequence

Transcript ID

Zm00001d037313_T030
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:120403191:120407827:-1 gene:Zm00001d037313 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:JUMONJI-transcription factor 7 description:Putative lysine-specific demethylase JMJ16
Sequence

GAGTCACTCCCGACTCCCAACTCCCGACCGGCTCGCGAGCTATCTCGGGGACACAACCGA
CTGCCTCGCGCCTCTTCCTCATCCGTCGTCACCGGTTGCTTCCCACCGCCGCCTTGCGCC
TCCATGCTCTCAGCAATGATGGGAATAGAAGGCATTGCAGCCACAGTCACCGAGGACCCT
GAACCCTCAATTCCTCCAGGATTTGGACCTTTTGCTGCCTCGGCATCATGGGGAATCCAA
AACGATGTTAAACCTGCTGATGATCATTCTAGTTCTGTTTTAGCATTACAGAGCATCGAC
GACGATGTGGAAATTTTGGAATATCTATCCAGTTCAGTGGATCACCAGAGTGACACAGGT
TGCTGTATTTCTGGGAGCAATACCTGTAGGAAATCACTGCGTAATAGACCTCCAATAGAT
TATAGCCGCTTTGATCAGATTGCAGATGAAGATTCTGATGCTGAAGTAGCAGACAAGGGT
GTAAATGCAGTGAAACACAGACAACAATTCCCTAAAGGAGTACTTCGAGGATGTCCAGAA
TGTGCCAATTGTCAAAAGGTTATTGCAAGATGGAATCCATCTGGTGCACGTAGGCCTGTT
CTTGATGAGGCTCCTGTTTACTATCCTACCGAGGAGGAATTTCAGGACACATTAAAATAC
ATTGAGATTATCCGCCCAACAGCAGAACCATATGGAATATGCCGTATTGTTCCACCAGCT
TCATGGAAGCCTCCATGCCTTCTTAAAGAGAAAAACATTTGGGAGTGCTCAAAATTTTCT
ACTCGGGTACAGAAGGTTGACAAGCTCCAAAATCGTAAATCGCCCAAGAAGAGCAGAAGA
GGTGGAATGATGAAGAAGCGTAGAAAGATTTCGGAGACTGAAGAAAACAATCACCATCAA
ATTGGAATGCAGCAAAACCAAGAGAGATTTGGATTTGAACCAGGACCAGAGTTCACACTA
CAGATGTTTCAGAAGTATGCAGATGACTTCAGTGATCAGTATTTTATGAAAGATAAATGC
AGAGATTCACCACCATCAGTGGAAGATATTGAAGGCGAGTATTGGCGCATAGTTGAAAGA
CCGACAGAGGAGATAGAGGTAATATATGGTGCCGATTTGGAGACTGGAACTTTTGGCAGT
GGGTTTCCAAAGTTATGTCCTGAAATGAAATCTGATGTGGAGGATAAATATGCACAATCT
GGGTGGAATCTAAATAACCTGCCTAGACTACAAGGTTCGGTTCTTTCTTTTGAAGGCGGT
GACATTTCTGGTGTTTTAGTGCCTTGGCTTTATGTCGGCATGTGTTTTTCATCTTTCTGC
TGGCATGTTGAAGATCATCATTTGTACTCACTGAACTACATGCATTGGGGTGCTCCAAAG
ATGTGGTATGGAGTTCCAGGGAAGGATGCTGTGAATTTGGAGGCTGCAATGAGGAAACAT
CTTCCTGAGTTATTTGAGGAGCAACCTGATTTGCTTCACAACTTAGTTACTCAGTTCTCA
CCATCATTGCTTAAATCTGAAGGAGTACCAGTCTACCGATGTGTTCAGCATGAGGGAGAG
TTTGTCCTGACGTTCCCACGGGCATACCATGCTGGTTTTAATTGTGGCTTCAATTGTGCA
GAAGCTGTTAATGTGGCACCCATTGATTGGTTGCCGGTTGGACAAAATGCTGTTGATCTT
TATCGTGAACAAGCTCGGAAAATAACTATCTCCCATGATAAGCTGTTGCTTGGGGCTGCA
AGAGAAGCAATAAGAGCTCAGTGGGACATCCTATTTCTCAAGAGGAATTCTTCTGTTAAC
TTGAGGTGGAAAAGCATATGTGGACCTGATAGCACAATATGCAAGTCACTGAAGGCACGA
ATTGAAATGGAGTTGGTACAAAGACAAAATATATCCTCTCCATGTCAATCTAGGAAAATG
GATAGTGAGTTTGATTCTACTGATAGGGAATGTGCATTGTGTTACTATGATCTGCATCTT
TCAGCTTCAGGCTGTCCATGCTCCCCAGAGAAATATGCTTGCCTGGTACATGCAAAGCAG
CTTTGTTCATGCGATTGGGACAAAAGGTTTTTCCTATTTCGTTATGATGTTAATGAGTTG
AATATCTTAGCTGATGCTTTAGGGGGAAAGCTAAGTGCCATTCACAGATGGGGTGTCTCT
GATCTTGGATTAAGTTTGAGCTCCTGTGTCAAACGGGAAAAGGTCCAAGATTCCAAGACT
GTTCGCAGATTAACTGATGGCCCAAGACGGTCCTACATGTCACAGGCATCAACAGTATCA
TTGATTCCTTCTTCTGTTAGCACTGAACAGAAAAAGAATGAAGATAAGACACTGGATTTA
GGTTGCCCAGGTATGAATTTACCAAAAATAAGTCCGGAGGCAAATAATCTGCGTCCTTCG
ACAGAACAGATAAAATCAGAAAATCTCTCACAGCTAAAGGAACCATGTGTGAAGAATGAA
TTATCTTGTCCGACCAGCAATGGTACCAGCCAAGAACATAAAGGAGGGATTGGAGGCCAC
AAACTTGCAGCAGCAAGCATGATGGTTCTTTCTGGTCAATCATTTCCTGCAAATGCTGGT
GAATCAGTGAGAAATGCGCATGTCTTGGCAGTATTTAAAGAGGGTAGAGACTGTACATCT
TCACTTACACTTAGGGAGTATCATAACAGGCCAGTGTCAATGATTGATAATGGAGCTAAC
ATGAAGCTGGATCTGGAAAACATAGACAATTCTCATATGTTGATGTCATCACCAGACTTC
AATGCAACTGTATGTCATTCTTACAAGGATCAAACATTCTTAACACTGGAAACTAATACC
TCTGTGATGACTGAGAAAGATAGCAGTCAGGCCCGTAATGCAAGCCAGCAGTTTGTCAGT
ACTGCTTTAAGAACACAAAATGTGTCTCAGGAACCATTGTGTACCGCGATTGCT