Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037199_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:115494237:115498366:1 gene:Zm00001d037199 gene_biotype:protein_coding transcript_biotype:protein_coding description:O-fucosyltransferase family protein
Sequence

ATGCCGACGCGCCGGAAGGTGAGGCCCGCGGGCGCGGGCGCGGCGGCGCGGCGGGCCGCG
CTGCGGTGGTGGCTGCTCTCCCTCGCCGCAGCGGGCGCCATCATCACCGCCGCCGCCGCG
CTGCTCGCCGTCACTCTCCACGTCTCCGGCCTCGCCATGCCCTCCGTCTCCTCCGGCGCG
CCCTACCGCCTCTCGCAGCCATGGGATACAGAGGAGCTGCGGTGGGAGCAGGAGTTCGCA
TCGCCCCAGCTCGCGTCGTCACGAAAGCTGGACGGTGCGGCCGACGACGCGTTGGGGAAG
AGGCTGTGGCTGCCGGCGCCGGCGCGGGGGTTCGTGCCCTGCGTGGCGCCGTCACCGGAA
TACAGAAGTCCGGTGGCGTCAAAGGGGTACTTGCTCGTACACACCAATGGCGGACTCAAC
CAGATGCGCGCTGGGATCAGTGATATGGTGGCTGTTGCACGCGTACTTAATGCTACACTC
ATCATTCCAGAGCTTGATAAGAAATCATTTTGGCATGACAAAAGCAACTTTTCAGATGTA
TTTGATGAAGAACACTTCATAAATTCTTTAGCAAATGATGTGAAAGTTGAGAAAGAACTG
CCAAAGGAATTGGTGAAAGCTCCAAAGTCTGTCAGGTACTTCAAGAGTTGGTCTGGAGTA
GATTATTACCAGGATGAGATTTCTCCACTGTGGGATCATCGCCAGGTCATTCGAGCTGCT
AAGTCAGATTCCCGCCTTGCAAACAACCACCTTCCTCCTGACATTCAGAAGCTTCGTTGT
CGGGCTTTTTTCCAAGCACTGAGATTTGCTCCCCCAATTGAAGCTCTAGGCAAACTATTG
GTGGAGAGGATGAGGTCATTTGGGAAATATATTGCTTTGCATTTGCGCTATGAGAAGGAT
ATGCTTGCCTTTAGTGGCTGCACATATGGTTTATCACGGACAGAATCAGAAGAACTTGCA
ATGATCAGGCAAGGCCTTAGGGTGAAGGACATTGATCCATTAGAACAAAGATCCCATGGG
TACTGCCCCTTGACACCAAAAGAAGTCGGCATGTTTCTTTCTGGACTAGGGTATCCATCA
AGCACCCCAATCTACATAGCTGCAGGGGAAATATATGGAGGTGAATCTCATATGGTTGAT
TTACAATCAAGGTTCCCTATACTGATGAACAAGGAAAAACTTGCCTCAGCTGAGGAGCTG
CGGTCTTTCAGCCAATATGCTGCTCAAATGGCAGCTTTAGATTATATCGTTTCAGTGGAG
AGCGACGTCTTCATTCCATCTTATTCGGGGAACATGGCACGGGCTGTTGCAGGTCACAGG
CGTTTCCTTGGCCATAGGAAGACAATCAGCCCTGATAGGAAAGCACTAGTTCGCTTGTTT
GACAAAGTGGCTAGTAGATTACTAGAGGAAGGGGAGAGGCTATCACAAAAGATAATAGAT
ATCCACCAGAAAAGACAAGGCTCTCCACGGAAACGAAAAGGTCCGGTCTCAGGAACAAAG
GGCAAAGACAGGTTCCGGTCAGAAGAGGCATTTTATGAGAACCCTTTTCCTGACTGCCTG
TGTCAACCAGGGCCTCCAGCCCCCTTGTCAGCATCAAAGTCACACTAA

Peptide Sequence

PEP ID

Zm00001d037199_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:115494237:115498366:1 gene:Zm00001d037199 transcript:Zm00001d037199_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:O-fucosyltransferase family protein
Sequence

MPTRRKVRPAGAGAAARRAALRWWLLSLAAAGAIITAAAALLAVTLHVSGLAMPSVSSGA
PYRLSQPWDTEELRWEQEFASPQLASSRKLDGAADDALGKRLWLPAPARGFVPCVAPSPE
YRSPVASKGYLLVHTNGGLNQMRAGISDMVAVARVLNATLIIPELDKKSFWHDKSNFSDV
FDEEHFINSLANDVKVEKELPKELVKAPKSVRYFKSWSGVDYYQDEISPLWDHRQVIRAA
KSDSRLANNHLPPDIQKLRCRAFFQALRFAPPIEALGKLLVERMRSFGKYIALHLRYEKD
MLAFSGCTYGLSRTESEELAMIRQGLRVKDIDPLEQRSHGYCPLTPKEVGMFLSGLGYPS
STPIYIAAGEIYGGESHMVDLQSRFPILMNKEKLASAEELRSFSQYAAQMAALDYIVSVE
SDVFIPSYSGNMARAVAGHRRFLGHRKTISPDRKALVRLFDKVASRLLEEGERLSQKIID
IHQKRQGSPRKRKGPVSGTKGKDRFRSEEAFYENPFPDCLCQPGPPAPLSASKSH

Transcript Sequence

Transcript ID

Zm00001d037199_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:115494237:115498366:1 gene:Zm00001d037199 gene_biotype:protein_coding transcript_biotype:protein_coding description:O-fucosyltransferase family protein
Sequence

TGAGGGCTCTGCACGCAATCACCCGCCGAGAGAAAAAAAAGGGCATCGCGGCAAGGGCTT
CCCTCCTCCGTCGCCCGGTCGAACCCCGCGCACTGCCGTCGATCGGCAGAGGCGAGAGGG
AAGGGGTGTTTCCCCTAGGCGGATGAGATGCCGACGCGCCGGAAGGTGAGGCCCGCGGGC
GCGGGCGCGGCGGCGCGGCGGGCCGCGCTGCGGTGGTGGCTGCTCTCCCTCGCCGCAGCG
GGCGCCATCATCACCGCCGCCGCCGCGCTGCTCGCCGTCACTCTCCACGTCTCCGGCCTC
GCCATGCCCTCCGTCTCCTCCGGCGCGCCCTACCGCCTCTCGCAGCCATGGGATACAGAG
GAGCTGCGGTGGGAGCAGGAGTTCGCATCGCCCCAGCTCGCGTCGTCACGAAAGCTGGAC
GGTGCGGCCGACGACGCGTTGGGGAAGAGGCTGTGGCTGCCGGCGCCGGCGCGGGGGTTC
GTGCCCTGCGTGGCGCCGTCACCGGAATACAGAAGTCCGGTGGCGTCAAAGGGGTACTTG
CTCGTACACACCAATGGCGGACTCAACCAGATGCGCGCTGGGATCAGTGATATGGTGGCT
GTTGCACGCGTACTTAATGCTACACTCATCATTCCAGAGCTTGATAAGAAATCATTTTGG
CATGACAAAAGCAACTTTTCAGATGTATTTGATGAAGAACACTTCATAAATTCTTTAGCA
AATGATGTGAAAGTTGAGAAAGAACTGCCAAAGGAATTGGTGAAAGCTCCAAAGTCTGTC
AGGTACTTCAAGAGTTGGTCTGGAGTAGATTATTACCAGGATGAGATTTCTCCACTGTGG
GATCATCGCCAGGTCATTCGAGCTGCTAAGTCAGATTCCCGCCTTGCAAACAACCACCTT
CCTCCTGACATTCAGAAGCTTCGTTGTCGGGCTTTTTTCCAAGCACTGAGATTTGCTCCC
CCAATTGAAGCTCTAGGCAAACTATTGGTGGAGAGGATGAGGTCATTTGGGAAATATATT
GCTTTGCATTTGCGCTATGAGAAGGATATGCTTGCCTTTAGTGGCTGCACATATGGTTTA
TCACGGACAGAATCAGAAGAACTTGCAATGATCAGGCAAGGCCTTAGGGTGAAGGACATT
GATCCATTAGAACAAAGATCCCATGGGTACTGCCCCTTGACACCAAAAGAAGTCGGCATG
TTTCTTTCTGGACTAGGGTATCCATCAAGCACCCCAATCTACATAGCTGCAGGGGAAATA
TATGGAGGTGAATCTCATATGGTTGATTTACAATCAAGGTTCCCTATACTGATGAACAAG
GAAAAACTTGCCTCAGCTGAGGAGCTGCGGTCTTTCAGCCAATATGCTGCTCAAATGGCA
GCTTTAGATTATATCGTTTCAGTGGAGAGCGACGTCTTCATTCCATCTTATTCGGGGAAC
ATGGCACGGGCTGTTGCAGGTCACAGGCGTTTCCTTGGCCATAGGAAGACAATCAGCCCT
GATAGGAAAGCACTAGTTCGCTTGTTTGACAAAGTGGCTAGTAGATTACTAGAGGAAGGG
GAGAGGCTATCACAAAAGATAATAGATATCCACCAGAAAAGACAAGGCTCTCCACGGAAA
CGAAAAGGTCCGGTCTCAGGAACAAAGGGCAAAGACAGGTTCCGGTCAGAAGAGGCATTT
TATGAGAACCCTTTTCCTGACTGCCTGTGTCAACCAGGGCCTCCAGCCCCCTTGTCAGCA
TCAAAGTCACACTAATCATCATCCTAACAGATCCCTGGGTGTGATTCCAGTGTACATAGA
CAGAAATTAAGAAACACATAGCAAGGTACACGATGACGAATTCTCACTGATCAGAAATGT
GTAGCTGACATCATGGGCTAACTATTGGTTGGCACGCCATCGTCCAGCTGTGGCTGAAGT
TCTAGCATGGCTGGGCTTGTTCTGAAGTCAGAACTGCTGGAGGTGGAAGCAGCTGTATAG
GGCTATAGAGAAGTCACGTGTTTTTGATTGGGATAATTATCCTAATTGCTTGTAAGTAGA
TGATAATAATAAACAGAGACAGATAGAATTACTGGAGCAGCTTGACAAACATCGCTCATA
TAGGTTTGAGTCTGATTGGCAGGGGAACTCACATTTTCTGCTAATTATTATTGTGATAGT
CATATTC