Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037182_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:114979500:114981186:-1 gene:Zm00001d037182 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:12-oxo-phytodienoic acid reductase3 description: 12-oxo-phytodienoic acid reductase3
Sequence

ATGGGGCACCAAGAACAAGAACAGGAAGTGATCCCGCTGATGACCCCGTACAAGATGGGG
CAGCTGGAGCTCTCCCACCGCGTGGTGCTGGCGCCGATGACGCGGTGCCGCGCCATCGGG
GACGTGCCGCAGCCGCACGCCGCCGTGTACTACTCGCAGCGCGCCAGCAGGGGCGGCGTG
CTCATCACCGAGGGCACGGGGGTGTCCGCCACCGCGCAGGGCTTCCCGGGGTCCCCCGGC
ATCTGGACGCAGGAGCAGGTGGCGGCGTGGAAGCCCATCGTCGACGCCGTCCACCGCAAG
GGTGCGCTCTTCTTCTGCCAGATCGCACACGTCGGAAGGGCATCCACCAACGATTTCCAG
CCGGACGGCCAGGCGCCGGTCTCGAGCACGGACGCGCAGCTCCCACCCGACGCCGAGTCC
GGCACGGTGTTCTCCAGGCCACGCCGGCTGCGCGCCGACGAGGTCCCGGGGATCGTCGAC
GACTTCAGGCGCGCCGCGCGCAACGCGATCGAGGCCGGGTTCGACGGCGTGGAGATCCAC
GGAGCGCACGGGTTCCTCCTGGAGCAGTTCATGAAGGACGGCGCCAACGACCGCGCCGAC
GAGTACGGCGGCAGCGTCGAGAACCGGTGCCGCTTCGTGGTCGAGGTCGTGGACGCTCTC
GTCCGTGAAATCGGCGCGAGCCGGGTTGGCATCAGGCTCTCCCCGTTCGCGGACTACTTG
AACTGTGCGGATTCCAACCCCTTGGCGCTAGGTCACTACATGGTGGAACAGCTCAACAGG
CACGAGGGGTTTCTGTACTGCCACATGGTGGAGCCGCGAATGGCCATCGTCGACGACCGT
AGGCAGATTCCGCATGGACTCCTGCCGTTCAAGGCGGCCTTCAATGGCACCTTCATCGCC
GCGGGCGGGTACGACAGGGAAAAAGGGAACAAGGTGGTCGCCGAAGGCTACGCGGACCTC
GTCGCATACGGAAGGCTGTTCTTGGCCAACCCAGACCTGCCTAAAAGGTTCGAGGTAGAC
GAGATCCTGAACAAGTATGATCGTTCCACCTTTTATACACAAGACCCTGTTGTTGGCTAT
ACAGACTACCCTTTCCTTAGGGACGACAGCGAAGACTTAGCTGCTCAAGTTTAA

Peptide Sequence

PEP ID

Zm00001d037182_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:114979500:114981186:-1 gene:Zm00001d037182 transcript:Zm00001d037182_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:12-oxo-phytodienoic acid reductase3 description: 12-oxo-phytodienoic acid reductase3
Sequence

MGHQEQEQEVIPLMTPYKMGQLELSHRVVLAPMTRCRAIGDVPQPHAAVYYSQRASRGGV
LITEGTGVSATAQGFPGSPGIWTQEQVAAWKPIVDAVHRKGALFFCQIAHVGRASTNDFQ
PDGQAPVSSTDAQLPPDAESGTVFSRPRRLRADEVPGIVDDFRRAARNAIEAGFDGVEIH
GAHGFLLEQFMKDGANDRADEYGGSVENRCRFVVEVVDALVREIGASRVGIRLSPFADYL
NCADSNPLALGHYMVEQLNRHEGFLYCHMVEPRMAIVDDRRQIPHGLLPFKAAFNGTFIA
AGGYDREKGNKVVAEGYADLVAYGRLFLANPDLPKRFEVDEILNKYDRSTFYTQDPVVGY
TDYPFLRDDSEDLAAQV

Transcript Sequence

Transcript ID

Zm00001d037182_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:114979500:114981186:-1 gene:Zm00001d037182 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:12-oxo-phytodienoic acid reductase3 description: 12-oxo-phytodienoic acid reductase3
Sequence

GGAGCACTATCTTCGAATCAAAACGTATAAATCCCCATTGGAAGGCCAGGCCTGGGTAGA
GCATAACCGAATAGAAATAGCTTTGGCACGCGCAAACAAGCAAGCAGCAGAGCAGATCAA
GTAAAGGTAGCAATTTGAGTAGTGTGCAAGCTAAGATGGGGCACCAAGAACAAGAACAGG
AAGTGATCCCGCTGATGACCCCGTACAAGATGGGGCAGCTGGAGCTCTCCCACCGCGTGG
TGCTGGCGCCGATGACGCGGTGCCGCGCCATCGGGGACGTGCCGCAGCCGCACGCCGCCG
TGTACTACTCGCAGCGCGCCAGCAGGGGCGGCGTGCTCATCACCGAGGGCACGGGGGTGT
CCGCCACCGCGCAGGGCTTCCCGGGGTCCCCCGGCATCTGGACGCAGGAGCAGGTGGCGG
CGTGGAAGCCCATCGTCGACGCCGTCCACCGCAAGGGTGCGCTCTTCTTCTGCCAGATCG
CACACGTCGGAAGGGCATCCACCAACGATTTCCAGCCGGACGGCCAGGCGCCGGTCTCGA
GCACGGACGCGCAGCTCCCACCCGACGCCGAGTCCGGCACGGTGTTCTCCAGGCCACGCC
GGCTGCGCGCCGACGAGGTCCCGGGGATCGTCGACGACTTCAGGCGCGCCGCGCGCAACG
CGATCGAGGCCGGGTTCGACGGCGTGGAGATCCACGGAGCGCACGGGTTCCTCCTGGAGC
AGTTCATGAAGGACGGCGCCAACGACCGCGCCGACGAGTACGGCGGCAGCGTCGAGAACC
GGTGCCGCTTCGTGGTCGAGGTCGTGGACGCTCTCGTCCGTGAAATCGGCGCGAGCCGGG
TTGGCATCAGGCTCTCCCCGTTCGCGGACTACTTGAACTGTGCGGATTCCAACCCCTTGG
CGCTAGGTCACTACATGGTGGAACAGCTCAACAGGCACGAGGGGTTTCTGTACTGCCACA
TGGTGGAGCCGCGAATGGCCATCGTCGACGACCGTAGGCAGATTCCGCATGGACTCCTGC
CGTTCAAGGCGGCCTTCAATGGCACCTTCATCGCCGCGGGCGGGTACGACAGGGAAAAAG
GGAACAAGGTGGTCGCCGAAGGCTACGCGGACCTCGTCGCATACGGAAGGCTGTTCTTGG
CCAACCCAGACCTGCCTAAAAGGTTCGAGGTAGACGAGATCCTGAACAAGTATGATCGTT
CCACCTTTTATACACAAGACCCTGTTGTTGGCTATACAGACTACCCTTTCCTTAGGGACG
ACAGCGAAGACTTAGCTGCTCAAGTTTAATTGTGTGGATGATCGATTTAATCACGGTTAC
TGCACGATCGAGATCGATACTACATCCATTTGAATATATATATCTAAGATGCATTGTTTT
TGTTTTAAGTTAGTTTTTTTATATTTGACCAAATTTATGTAAAAGATATATGTGCTAAAC
TAGTTGAGTATACCGGTGTGTTGCAACGACAAACGCTAGTCTGTGATCAAATGATTTTAT
TAAACTTTACTATAGCCAGACTTACAACACCGTATCATGTACATGTGTGTATTTGTTCAA
GTAAAAATATATAATGGTGGACTTGGAGG