Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d037140_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:6:113744887:113748041:-1 gene:Zm00001d037140 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Homeobox-transcription factor 10 description:Homeobox-leucine zipper protein HDG11
Sequence	ATGGCGTGCGTGCTCGCCCATGACTGCAGGATGTTCAAGGAGTGCCCGCACCCCGACGAG AACCAGCGCGCCGCGCTCAGCCGGGAGCTCGGCCTGGAGCCGCGCCAGATCAAGTTCTGG TTTCAGAACCGCCGCACCCAGATGAAGGCGCAGCACGAGCGCGCGGACAACTGCTTCCTG CGCGCGGAGAACGACAAGATCCGGTGCGAGAACATCACCATGCGCGAGGCGCTCAAGAAC GTCATCTGCCCCAGCTGCGGCGGCCCGCCCGTCGACGAGGACTTCTTCGACGAGCAGAAG CTCCGCATGGAGAATGCCCGCCTCAAGGAAGAGCTGGATCGGGTGTCGAGCATCACGTCC AAGTACCTCGGCCGGCCGTTCACGCAGATGCCTCCGGTGCCGACCATGTCCGTGTCGTCG CTGGACCTGTCCGTGGGCGGGATGGGCTCCCTCGGCGGGCCGTCGCTGGACCTCGACCTC CTCAGCGGCTGCTCGTCCGGGCTGCCGTACCAGGTGCCGGCGCCCGTGACGGAAATGGAG CGCCCCATGATGGTCGATATGGCGGCGCGCGCCATGGACGAGCTCATCCGGCTCGCCCAG GCCGGCGAGCAAATCTGGGTCAAGGGCGTGCCCGGGGACGCGAGGGAGGTGCTCGACGTC GGTACTTACGACAGCCTCTTCGCCAAGCCCGGCGCCGCGTTCCGCCCGCCGGACATCAAC GTCGAGGCGTCCAGGGACTCGGGCCTCGTGTTCATGAGCGCCGTCGCGCTCGTCGACGTC TTCATGGACACGAACAAGTGGATGGAATTCTTCCCCGGCATCGTGTCCAAGGCGCAAACC GTCGATGTTCTCGTGAACGGCTTGGGCGGGAGGAGCGAGTCCTTAATCATGATGTATGAG GAGCTGCACATCATGACTCCGGTCGTGCCGACTCGCGAGCTGAGCTTCCTCCGCTACTGC AAGCAGATCGAGCAGGGGCTGTGGGCCGTCGCGGACGTCTCCCTGGAGGGGCAGCGCGAC GCCCATTACGGCGTGCCGTCCCGCTCCCGTCGCATGCCGTCGGGGTGCCTCATCGCCGAC ATGTCGAACGGCTACTCCAAGGTGACCTGGGTCGAACACATGGAGATCGAGCAGATGCTC CCGATCAACGTCCTTTACCGCAACCTGGTGCTGAGCGGCGCCGCGTTCGGGGCGCACCGC TGGCTGGCCGCGCTGCAGCGTGCGTGCGAGCGGTTCGCGTCCGTGGCCACCCTCGGCGTG CCGCACCACGACGTCGCCGGAGTGACGCCGGAGGGGAAGCGGAGCATGACGAAGCTGTCG CAGCGGATGGTGAGCAGCTTCTGTGCCAGCCTGAGCTCGTCGCCGCTGCAGCGGTGGACG CTGCTCTCTGGCACCACGGACGTGAGCGTCCGGGTCTCCACGCACCGCAGCACCGACTCA GGCCAGCCCAACGGCGTCGTCCTCAGCGCCGCCACCTCCATCTGGCTGCCCGTCCCCGGC GACCATGTCTTCGCCTTCGTCCGCGACGAGAACGCGCGCTCCCAGTGGGATGTCCTGTCG CACGGCAATCAGGTTCAGGAGGTGTCGCGCATCCCCAACGGCTCCAACCCCGGCAACTGC ATCTCCCTGCTAAGAGGTCTGAACGCGAACCAGAACAGCATGCTGATCCTTCAGGAGAGC TGCACGGACGCGTCGGGGGCGCTGGTGGTGTACTCGCCGATCGACATCCCGGCGGCGAAC GTGGTGATGAGCGGCGAGGACCCGTCGGGCATCCCGCTGCTGCCGTCGGGCTTCGCCATC CTGCCGGGGTCCGGCGCGGGCGCGTCCAGCAGCGCCGTCGTCCCGCCGCCGGGCTGCGTG GTCACCGTCGCGTTCCAGATCCTCGTCAGCAACCTGCCGTCGTCCAGGCTGAACGCCGAG TCCGTCGCCACCGTCAACAGCCTCATCGGCACCACCGTGCAGCAGATCAAGGCGGCGCTC AACTGTGCCGGCCATTGA

Peptide Sequence

PEP ID	Zm00001d037140_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:6:113744887:113748041:-1 gene:Zm00001d037140 transcript:Zm00001d037140_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Homeobox-transcription factor 10 description:Homeobox-leucine zipper protein HDG11
Sequence	MACVLAHDCRMFKECPHPDENQRAALSRELGLEPRQIKFWFQNRRTQMKAQHERADNCFL RAENDKIRCENITMREALKNVICPSCGGPPVDEDFFDEQKLRMENARLKEELDRVSSITS KYLGRPFTQMPPVPTMSVSSLDLSVGGMGSLGGPSLDLDLLSGCSSGLPYQVPAPVTEME RPMMVDMAARAMDELIRLAQAGEQIWVKGVPGDAREVLDVGTYDSLFAKPGAAFRPPDIN VEASRDSGLVFMSAVALVDVFMDTNKWMEFFPGIVSKAQTVDVLVNGLGGRSESLIMMYE ELHIMTPVVPTRELSFLRYCKQIEQGLWAVADVSLEGQRDAHYGVPSRSRRMPSGCLIAD MSNGYSKVTWVEHMEIEQMLPINVLYRNLVLSGAAFGAHRWLAALQRACERFASVATLGV PHHDVAGVTPEGKRSMTKLSQRMVSSFCASLSSSPLQRWTLLSGTTDVSVRVSTHRSTDS GQPNGVVLSAATSIWLPVPGDHVFAFVRDENARSQWDVLSHGNQVQEVSRIPNGSNPGNC ISLLRGLNANQNSMLILQESCTDASGALVVYSPIDIPAANVVMSGEDPSGIPLLPSGFAI LPGSGAGASSSAVVPPPGCVVTVAFQILVSNLPSSRLNAESVATVNSLIGTTVQQIKAAL NCAGH

Transcript Sequence

Transcript ID	Zm00001d037140_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:6:113744887:113748041:-1 gene:Zm00001d037140 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Homeobox-transcription factor 10 description:Homeobox-leucine zipper protein HDG11
Sequence	GTTCGTCGTGAGACGTGATGGTTTGGCGGAAAGGAATGTAATGGCGTGCGTGCTCGCCCA TGACTGCAGGATGTTCAAGGAGTGCCCGCACCCCGACGAGAACCAGCGCGCCGCGCTCAG CCGGGAGCTCGGCCTGGAGCCGCGCCAGATCAAGTTCTGGTTTCAGAACCGCCGCACCCA GATGAAGGCGCAGCACGAGCGCGCGGACAACTGCTTCCTGCGCGCGGAGAACGACAAGAT CCGGTGCGAGAACATCACCATGCGCGAGGCGCTCAAGAACGTCATCTGCCCCAGCTGCGG CGGCCCGCCCGTCGACGAGGACTTCTTCGACGAGCAGAAGCTCCGCATGGAGAATGCCCG CCTCAAGGAAGAGCTGGATCGGGTGTCGAGCATCACGTCCAAGTACCTCGGCCGGCCGTT CACGCAGATGCCTCCGGTGCCGACCATGTCCGTGTCGTCGCTGGACCTGTCCGTGGGCGG GATGGGCTCCCTCGGCGGGCCGTCGCTGGACCTCGACCTCCTCAGCGGCTGCTCGTCCGG GCTGCCGTACCAGGTGCCGGCGCCCGTGACGGAAATGGAGCGCCCCATGATGGTCGATAT GGCGGCGCGCGCCATGGACGAGCTCATCCGGCTCGCCCAGGCCGGCGAGCAAATCTGGGT CAAGGGCGTGCCCGGGGACGCGAGGGAGGTGCTCGACGTCGGTACTTACGACAGCCTCTT CGCCAAGCCCGGCGCCGCGTTCCGCCCGCCGGACATCAACGTCGAGGCGTCCAGGGACTC GGGCCTCGTGTTCATGAGCGCCGTCGCGCTCGTCGACGTCTTCATGGACACGAACAAGTG GATGGAATTCTTCCCCGGCATCGTGTCCAAGGCGCAAACCGTCGATGTTCTCGTGAACGG CTTGGGCGGGAGGAGCGAGTCCTTAATCATGATGTATGAGGAGCTGCACATCATGACTCC GGTCGTGCCGACTCGCGAGCTGAGCTTCCTCCGCTACTGCAAGCAGATCGAGCAGGGGCT GTGGGCCGTCGCGGACGTCTCCCTGGAGGGGCAGCGCGACGCCCATTACGGCGTGCCGTC CCGCTCCCGTCGCATGCCGTCGGGGTGCCTCATCGCCGACATGTCGAACGGCTACTCCAA GGTGACCTGGGTCGAACACATGGAGATCGAGCAGATGCTCCCGATCAACGTCCTTTACCG CAACCTGGTGCTGAGCGGCGCCGCGTTCGGGGCGCACCGCTGGCTGGCCGCGCTGCAGCG TGCGTGCGAGCGGTTCGCGTCCGTGGCCACCCTCGGCGTGCCGCACCACGACGTCGCCGG AGTGACGCCGGAGGGGAAGCGGAGCATGACGAAGCTGTCGCAGCGGATGGTGAGCAGCTT CTGTGCCAGCCTGAGCTCGTCGCCGCTGCAGCGGTGGACGCTGCTCTCTGGCACCACGGA CGTGAGCGTCCGGGTCTCCACGCACCGCAGCACCGACTCAGGCCAGCCCAACGGCGTCGT CCTCAGCGCCGCCACCTCCATCTGGCTGCCCGTCCCCGGCGACCATGTCTTCGCCTTCGT CCGCGACGAGAACGCGCGCTCCCAGTGGGATGTCCTGTCGCACGGCAATCAGGTTCAGGA GGTGTCGCGCATCCCCAACGGCTCCAACCCCGGCAACTGCATCTCCCTGCTAAGAGGTCT GAACGCGAACCAGAACAGCATGCTGATCCTTCAGGAGAGCTGCACGGACGCGTCGGGGGC GCTGGTGGTGTACTCGCCGATCGACATCCCGGCGGCGAACGTGGTGATGAGCGGCGAGGA CCCGTCGGGCATCCCGCTGCTGCCGTCGGGCTTCGCCATCCTGCCGGGGTCCGGCGCGGG CGCGTCCAGCAGCGCCGTCGTCCCGCCGCCGGGCTGCGTGGTCACCGTCGCGTTCCAGAT CCTCGTCAGCAACCTGCCGTCGTCCAGGCTGAACGCCGAGTCCGTCGCCACCGTCAACAG CCTCATCGGCACCACCGTGCAGCAGATCAAGGCGGCGCTCAACTGTGCCGGCCATTGATC GCCTCGTCGCCCTTCCACCCTCGCTCCGCCGCCACAGTAACTGACGAGAGTTGGTTGGCC CGTTGAATGCTCGCATTCATGGAGTCCACCTGCCGCTGCTCCCGCGGAAACTGCTGACGC CCTCCAGCAACCTATATCCATGATCCATCCCCACCATGCACCATAACAGCTTTTCCTTCC TC