Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037105_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:112386544:112388553:1 gene:Zm00001d037105 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleolar GTP-binding protein 1

Sequence

ATGGTGCAATACAATTTCAAGAAGATCACTGTTGTCCCTCCCGGGAAGGACTTCATTGAC
ATAATCCTGTCCCGCACTCAAAGGCAGACACCGACTGTTGTCCACAAGGGATATGCTATC
TCCCGCATTCGCCAGTTTTACATGCGCAAGGTTAGATATTCCCAGCAGAACTTCTATGAA
AAGCTCTCCACCATCATCGATGAGTTTCCTCGACTGGATGACATCCACCCTTTCTATGGT
GATCTCCTCCACGTGCTCTACAACAAGGATCACTACAAGCTTGCGCTGGGTCAAATCAAC
ACAGCTAGGAATATCATTGCAAAGATATCCAAGGACTACTTGAGGCTGCTCAAGTATGGA
GACTCCCTTTACCGGTGCAAGTGTTTGAAGGTGGCTGCACTAGGTCGCATGTGCACTGTT
GTGAAGAGGATCAGTCCTAGTTTGGCTTACTTGGAGCAGATCAGGCAGCACATGGCCAGG
CTTCCATCCATAGACCCGAACACCCGTACTGTGCTGATTTGTGGATATCCAAATGTGGGG
AAGAGTTCGTTCATGAACAAGGTTACAAGGGCAGATGTGGATGTCCAGCCATATGCCTTT
ACAACAAAATCCCTGTTTGTTGGCCACACAGATTACAAGTACCTGCGCTACCAAGTGATT
GACACACCAGGTATACTTGACCGGCCTTTTGAAGATAGGAACATCATAGAAATGTGTAGC
ATCACTGCGCTGGCACACTTGAGGGCTGCGGTGTTGTTCTTTCTAGACATTTCTGGATCT
TGTGGGTACAGTATCGCTCAGCAAGCTGCACTCTTCCACAGTATAAAGTCTCTGTTTATG
AATAAGCCTTTGGTCATTGTGTGCAACAAGACTGACTTGCAGCCACTTGAAGGGCTTTCT
GAGGATGACATGAAGTTAGTCATGGAGATGAAGGCAGAGGCTATGAAGACTATAACTCAA
GCTGTTGGTCCTAATGAAGAGGGTGTTTTATTGACTATGAGCACTTTAACAGATGATGGT
GTAATGGCTGTGAAAAATGCTGCATGCGAGAGGCTTCTTGAACAGAGGGTGGATGTGAAG
ATGAAATCAAAGAAGATGATGGATTGCTTGAATAGGTTTCATGTTGCTGTTCCAAAGCCT
CGTGACAACAAGGAGCGGCCTGTTTGCATCCCTCCGGCTGTTCTGGAAGCTAGGGCAAAT
GCTGCTGCTAAGGAAAAGAAGAAGCTTGAGAAGGACATTGAGAATGAGAATGGAGGTGCT
GGGGTATATTCTGCAAGTCTCAAGAAACATTATATATTGGCTAATGATGAATGGAAGGAA
GATATTCTTCCAGAGATACTGGATGGTCACAACGTTGCAGATTTTCTGGATCCGGATATC
CTAGTAAGGTGTGAAGAGTTGGAAAGGGAGGAAGGGCTTCGCCTGGAAGAACAAGCTGCA
GAAGATGCTTTCCAGATTGATGGCCATGAACTAACTCAGGAACAGAAGGAGATTCTGGCT
CAGATTAGGAAGAAGAAGGCATTACTTATCCAAGAACATAGAATGAAGAAGAGAACTGCA
GAAAGCCGTCCTATTGTCCCTAGAAAGTTTGACAAAGATAGGAAATTCACAACTAATAGG
ATGGGACGGCAGCTTTCCTCTATGGGTGTGGATCCTATTGCTGCCATCAATAGAGCTCGT
AGCCAGTCTAGGGGCCGCAAGCGTGAGAGGTCAGTGAGCAGAGCTGCAGCTGATGGTGAC
GGTATGGAGATAGATGGCCAGCAATCCAACAAGAAACTGCGTCGTACATCAAGGTCGAGG
TCGAGGTCACGGGCTCCTGAGGAGGTCATTCCTGGAGAAGGATTCAAGGACTCTGAGCAG
AAGAAGAAGGCTATCAAGAAAGCAAAGGCCTCTACAAGGAACAGGAACAAGGATGCTCGC
CGTGGAGAGGCTGACCGTGTTATTCCTACTTTGAAACCAAAGCATCTGTTCTCTGGGAAA
CGCACTCTTGGAAAGACAAGCAGGCGATAA

Peptide Sequence

PEP ID

Zm00001d037105_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:112386544:112388553:1 gene:Zm00001d037105 transcript:Zm00001d037105_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleolar GTP-binding protein 1

Sequence

MVQYNFKKITVVPPGKDFIDIILSRTQRQTPTVVHKGYAISRIRQFYMRKVRYSQQNFYE
KLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKISKDYLRLLKYG
DSLYRCKCLKVAALGRMCTVVKRISPSLAYLEQIRQHMARLPSIDPNTRTVLICGYPNVG
KSSFMNKVTRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS
ITALAHLRAAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLVIVCNKTDLQPLEGLS
EDDMKLVMEMKAEAMKTITQAVGPNEEGVLLTMSTLTDDGVMAVKNAACERLLEQRVDVK
MKSKKMMDCLNRFHVAVPKPRDNKERPVCIPPAVLEARANAAAKEKKKLEKDIENENGGA
GVYSASLKKHYILANDEWKEDILPEILDGHNVADFLDPDILVRCEELEREEGLRLEEQAA
EDAFQIDGHELTQEQKEILAQIRKKKALLIQEHRMKKRTAESRPIVPRKFDKDRKFTTNR
MGRQLSSMGVDPIAAINRARSQSRGRKRERSVSRAAADGDGMEIDGQQSNKKLRRTSRSR
SRSRAPEEVIPGEGFKDSEQKKKAIKKAKASTRNRNKDARRGEADRVIPTLKPKHLFSGK
RTLGKTSRR

Transcript Sequence

Transcript ID

Zm00001d037105_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:112386544:112388553:1 gene:Zm00001d037105 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleolar GTP-binding protein 1

Sequence

ATGGTGCAATACAATTTCAAGAAGATCACTGTTGTCCCTCCCGGGAAGGACTTCATTGAC
ATAATCCTGTCCCGCACTCAAAGGCAGACACCGACTGTTGTCCACAAGGGATATGCTATC
TCCCGCATTCGCCAGTTTTACATGCGCAAGGTTAGATATTCCCAGCAGAACTTCTATGAA
AAGCTCTCCACCATCATCGATGAGTTTCCTCGACTGGATGACATCCACCCTTTCTATGGT
GATCTCCTCCACGTGCTCTACAACAAGGATCACTACAAGCTTGCGCTGGGTCAAATCAAC
ACAGCTAGGAATATCATTGCAAAGATATCCAAGGACTACTTGAGGCTGCTCAAGTATGGA
GACTCCCTTTACCGGTGCAAGTGTTTGAAGGTGGCTGCACTAGGTCGCATGTGCACTGTT
GTGAAGAGGATCAGTCCTAGTTTGGCTTACTTGGAGCAGATCAGGCAGCACATGGCCAGG
CTTCCATCCATAGACCCGAACACCCGTACTGTGCTGATTTGTGGATATCCAAATGTGGGG
AAGAGTTCGTTCATGAACAAGGTTACAAGGGCAGATGTGGATGTCCAGCCATATGCCTTT
ACAACAAAATCCCTGTTTGTTGGCCACACAGATTACAAGTACCTGCGCTACCAAGTGATT
GACACACCAGGTATACTTGACCGGCCTTTTGAAGATAGGAACATCATAGAAATGTGTAGC
ATCACTGCGCTGGCACACTTGAGGGCTGCGGTGTTGTTCTTTCTAGACATTTCTGGATCT
TGTGGGTACAGTATCGCTCAGCAAGCTGCACTCTTCCACAGTATAAAGTCTCTGTTTATG
AATAAGCCTTTGGTCATTGTGTGCAACAAGACTGACTTGCAGCCACTTGAAGGGCTTTCT
GAGGATGACATGAAGTTAGTCATGGAGATGAAGGCAGAGGCTATGAAGACTATAACTCAA
GCTGTTGGTCCTAATGAAGAGGGTGTTTTATTGACTATGAGCACTTTAACAGATGATGGT
GTAATGGCTGTGAAAAATGCTGCATGCGAGAGGCTTCTTGAACAGAGGGTGGATGTGAAG
ATGAAATCAAAGAAGATGATGGATTGCTTGAATAGGTTTCATGTTGCTGTTCCAAAGCCT
CGTGACAACAAGGAGCGGCCTGTTTGCATCCCTCCGGCTGTTCTGGAAGCTAGGGCAAAT
GCTGCTGCTAAGGAAAAGAAGAAGCTTGAGAAGGACATTGAGAATGAGAATGGAGGTGCT
GGGGTATATTCTGCAAGTCTCAAGAAACATTATATATTGGCTAATGATGAATGGAAGGAA
GATATTCTTCCAGAGATACTGGATGGTCACAACGTTGCAGATTTTCTGGATCCGGATATC
CTAGTAAGGTGTGAAGAGTTGGAAAGGGAGGAAGGGCTTCGCCTGGAAGAACAAGCTGCA
GAAGATGCTTTCCAGATTGATGGCCATGAACTAACTCAGGAACAGAAGGAGATTCTGGCT
CAGATTAGGAAGAAGAAGGCATTACTTATCCAAGAACATAGAATGAAGAAGAGAACTGCA
GAAAGCCGTCCTATTGTCCCTAGAAAGTTTGACAAAGATAGGAAATTCACAACTAATAGG
ATGGGACGGCAGCTTTCCTCTATGGGTGTGGATCCTATTGCTGCCATCAATAGAGCTCGT
AGCCAGTCTAGGGGCCGCAAGCGTGAGAGGTCAGTGAGCAGAGCTGCAGCTGATGGTGAC
GGTATGGAGATAGATGGCCAGCAATCCAACAAGAAACTGCGTCGTACATCAAGGTCGAGG
TCGAGGTCACGGGCTCCTGAGGAGGTCATTCCTGGAGAAGGATTCAAGGACTCTGAGCAG
AAGAAGAAGGCTATCAAGAAAGCAAAGGCCTCTACAAGGAACAGGAACAAGGATGCTCGC
CGTGGAGAGGCTGACCGTGTTATTCCTACTTTGAAACCAAAGCATCTGTTCTCTGGGAAA
CGCACTCTTGGAAAGACAAGCAGGCGATAA