Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037036_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:109841574:109844183:1 gene:Zm00001d037036 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

ATGGCCGCCACGCCCCTCCCTATCACCTCCCCACCTCCACCACCCACGCCACCCCTACCG
CAGCCACCCACCGCCGCCACTATCCGCTCTCTCACTGCCGCAGGCAACCATGCCGCTGCT
CTCCACGCGCTATCATCCTTGTCGGCGGCGTCCTCCTCCCATGCCCCGCTCGACCACTTC
GCGCTCCCGCCCGCCGCCAAGTCCGCCGCCGCGCTTCGCTCCCTCATAGCCGTCCGGTCC
ATTCACGGCGCTGCGCTGCGCCGCGATCTCCTCCATGGGTTCACCCCGGCCGTCGCCAAC
GCGCTCCTCACCGCCTACGCGCGATGCGGCGACCTCACCGCCGCGCTCGCGCTCTTCAAT
GCCATGCCCAGCCGCGACGCCGTCACCTTTAACTCCCTCATCGCCGCGCTCTGCCTCTTC
CGCCGCTGGCTCCCGGCACTGGACGCGCTCCGCGACATGCTCCTGGAGGGCCACCCGCTC
AGCTCATTCACGCTTGTGAGCGTCCTGCTCGCGTGCTCCCACCTCGCTGAGGACCTGCGC
CTCGGCCGTGAGGCGCACGCGTTCGCTCTCAAGAACGGGTTCCTGGACGGCGACGAACGG
TTCGCGTTTAACGCGCTGCTCTCCATGTACGCGCGCCTCGGCCTTGTCGACGACGCGCAG
ATGCTCTTCGGCTCCGTCGACACCACCGACTCGCCGGGCGGTGGCGTCGTTACGTGGAAC
ACCATGGTCAGCCTGCTGGTGCAGAGCGGGCGCTGTGGCGAGGCCATCGAGGTGATTTAC
GACATGGTCGCGCGCGGGGTGCGCCCGGACGGTATCACGTTCGCGAGCGCGCTCCCGGCG
TGTTCCCAGCTGGAGATGCTCTCCCTCGGCCGGGAGATGCACGCCTACGTCCTCAAGGAC
TCCGACCTCGCCGCCAACTCGTTCGTAGCAAGCGCGCTCGTGGACATGTACGCGAGCCAT
GAGCGGGTGGGCGTGGCGAGGCGGGTGTTCGACATGGTCCCGGGCGGACACCGTCAGCTC
GGGCTGTGGAACGCCATGGTCTGCGGATATGCGCAGGCTGGCATGGACGAGGAGGCATTG
GAGCTCTTCGCCCGGATGGAGGCCGAGGCCGGCGTCGTACCCAGCGAGACCACCATTGCG
GGCGTGCTGCCCGCGTGCGCTCGTTCAGAGACCTTTGCCGGCAAGGAAGCTGTGCACGGT
TACGTCCTGAAGCGCGGCATGGCGGATAACCCATTCGTGCAGAACGCGCTCATGGACTTG
TACGCGCGCCTCGGCGACATGGAAGCTGCGCGGTGGATCTTCGCCGCGATCGAGCCCCGC
GACGTGGTCTCTTGGAACACTCTCATCACTGGCTGCGTCGTGCAGGGCCACATCCACGAC
GCGTTCCAGTTGGTCCGGGAGATGCAGCAGCAAGGGAGATTCACTGATGCCACAACAGAA
GACGGCATCGCTGGGACAGATGAAGAGCCGGTGGTGCCGAACAACGTCACACTCATGACC
CTGCTCCCTGGCTGCGCGATGCTGGCGGCGCCAGCGAAGGGGAAGGAGATCCATGGCTAT
GCGATGCGCCACGCCTTGGACTCGGACATCGCCGTCGGGAGCGCGCTGGTGGACATGTAC
GCCAAGTGCGGCTGCCTGGCGCTGTCGAGGGCCGTGTTCGACCGGCTGCCGAAGAGGAAC
GTCATCACCTGGAACGTTCTCATCATGGCCTACGGCATGCATGGGCTCGGTGATGAGGCC
ATCGCTCTGTTCGACCGAATGGTGATGAGCAACGAGGCTAAGCCGAACGAGGTCACCTTC
ATCGCCGCACTAGCAGCCTGCAGCCACTCCGGCATGGTCGACCGCGGCATGGAGCTATTC
CATAGCATGAAGAGGAACCATGGGGTCCAGCCAACACCAGATCTTCACGCCTGCGCTGTT
GACATTCTCGGTCGGGCTGGCAGGCTGGATGAGGCCTACAGTATCATCACCTCAATGGAG
CCAGGAGAGCAGCAGGTGTCCGCGTGGAGCAGCTTCCTTGGAGCATGCCGGCTGCACCGG
AACGTCCCTCTTGGCGAGATTGCTGCCGAGCGGCTGTTCCAGCTGGAGCCCGACGAGGCG
AGCCATTACGTGCTCCTGTGCAACATTTACTCCGCTGCCGGCCTATGGGAGAAATCATCA
GAGGTGCGGAACAGGATGCGGCAGAGGGGCGTCAGCAAGGAACCCGGCTGCAGCTGGATC
GAACTCGACGGCGTCATCCACAGGTTCATGGCTGGCGAGTCTGCGCACCCAGAGAGCACG
CTGGTGCACGCGCACATGGACGCACTCTGGGAGCGGATGAGGAACCAGGGGTACACGCCA
GACACGTCGTCTGTGCTTCACGACATTGAGGAGAGCGAGAAGGCGGCGATCCTCCGGTAC
CACAGCGAGAAGCTCGCCATTGCCTTCGGGCTGCTGCGGACGCCACCTGGCGCAACCATC
AGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCATGAGGCTGCTAAATTCATCTCC
AGGATGGTGGGGAGGGAAATTGTGCTGAGGGACGTGAGAAGGTTTCACCATTTCGTGGAC
GGGGCCTGCTCCTGTGGGGATTACTGGTAG

Peptide Sequence

PEP ID

Zm00001d037036_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:109841574:109844183:1 gene:Zm00001d037036 transcript:Zm00001d037036_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

MAATPLPITSPPPPPTPPLPQPPTAATIRSLTAAGNHAAALHALSSLSAASSSHAPLDHF
ALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFN
AMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLR
LGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWN
TMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKD
SDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEAL
ELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDL
YARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTE
DGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMY
AKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTF
IAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSME
PGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSS
EVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTP
DTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFIS
RMVGREIVLRDVRRFHHFVDGACSCGDYW

Transcript Sequence

Transcript ID

Zm00001d037036_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:109841574:109844183:1 gene:Zm00001d037036 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

ATGGCCGCCACGCCCCTCCCTATCACCTCCCCACCTCCACCACCCACGCCACCCCTACCG
CAGCCACCCACCGCCGCCACTATCCGCTCTCTCACTGCCGCAGGCAACCATGCCGCTGCT
CTCCACGCGCTATCATCCTTGTCGGCGGCGTCCTCCTCCCATGCCCCGCTCGACCACTTC
GCGCTCCCGCCCGCCGCCAAGTCCGCCGCCGCGCTTCGCTCCCTCATAGCCGTCCGGTCC
ATTCACGGCGCTGCGCTGCGCCGCGATCTCCTCCATGGGTTCACCCCGGCCGTCGCCAAC
GCGCTCCTCACCGCCTACGCGCGATGCGGCGACCTCACCGCCGCGCTCGCGCTCTTCAAT
GCCATGCCCAGCCGCGACGCCGTCACCTTTAACTCCCTCATCGCCGCGCTCTGCCTCTTC
CGCCGCTGGCTCCCGGCACTGGACGCGCTCCGCGACATGCTCCTGGAGGGCCACCCGCTC
AGCTCATTCACGCTTGTGAGCGTCCTGCTCGCGTGCTCCCACCTCGCTGAGGACCTGCGC
CTCGGCCGTGAGGCGCACGCGTTCGCTCTCAAGAACGGGTTCCTGGACGGCGACGAACGG
TTCGCGTTTAACGCGCTGCTCTCCATGTACGCGCGCCTCGGCCTTGTCGACGACGCGCAG
ATGCTCTTCGGCTCCGTCGACACCACCGACTCGCCGGGCGGTGGCGTCGTTACGTGGAAC
ACCATGGTCAGCCTGCTGGTGCAGAGCGGGCGCTGTGGCGAGGCCATCGAGGTGATTTAC
GACATGGTCGCGCGCGGGGTGCGCCCGGACGGTATCACGTTCGCGAGCGCGCTCCCGGCG
TGTTCCCAGCTGGAGATGCTCTCCCTCGGCCGGGAGATGCACGCCTACGTCCTCAAGGAC
TCCGACCTCGCCGCCAACTCGTTCGTAGCAAGCGCGCTCGTGGACATGTACGCGAGCCAT
GAGCGGGTGGGCGTGGCGAGGCGGGTGTTCGACATGGTCCCGGGCGGACACCGTCAGCTC
GGGCTGTGGAACGCCATGGTCTGCGGATATGCGCAGGCTGGCATGGACGAGGAGGCATTG
GAGCTCTTCGCCCGGATGGAGGCCGAGGCCGGCGTCGTACCCAGCGAGACCACCATTGCG
GGCGTGCTGCCCGCGTGCGCTCGTTCAGAGACCTTTGCCGGCAAGGAAGCTGTGCACGGT
TACGTCCTGAAGCGCGGCATGGCGGATAACCCATTCGTGCAGAACGCGCTCATGGACTTG
TACGCGCGCCTCGGCGACATGGAAGCTGCGCGGTGGATCTTCGCCGCGATCGAGCCCCGC
GACGTGGTCTCTTGGAACACTCTCATCACTGGCTGCGTCGTGCAGGGCCACATCCACGAC
GCGTTCCAGTTGGTCCGGGAGATGCAGCAGCAAGGGAGATTCACTGATGCCACAACAGAA
GACGGCATCGCTGGGACAGATGAAGAGCCGGTGGTGCCGAACAACGTCACACTCATGACC
CTGCTCCCTGGCTGCGCGATGCTGGCGGCGCCAGCGAAGGGGAAGGAGATCCATGGCTAT
GCGATGCGCCACGCCTTGGACTCGGACATCGCCGTCGGGAGCGCGCTGGTGGACATGTAC
GCCAAGTGCGGCTGCCTGGCGCTGTCGAGGGCCGTGTTCGACCGGCTGCCGAAGAGGAAC
GTCATCACCTGGAACGTTCTCATCATGGCCTACGGCATGCATGGGCTCGGTGATGAGGCC
ATCGCTCTGTTCGACCGAATGGTGATGAGCAACGAGGCTAAGCCGAACGAGGTCACCTTC
ATCGCCGCACTAGCAGCCTGCAGCCACTCCGGCATGGTCGACCGCGGCATGGAGCTATTC
CATAGCATGAAGAGGAACCATGGGGTCCAGCCAACACCAGATCTTCACGCCTGCGCTGTT
GACATTCTCGGTCGGGCTGGCAGGCTGGATGAGGCCTACAGTATCATCACCTCAATGGAG
CCAGGAGAGCAGCAGGTGTCCGCGTGGAGCAGCTTCCTTGGAGCATGCCGGCTGCACCGG
AACGTCCCTCTTGGCGAGATTGCTGCCGAGCGGCTGTTCCAGCTGGAGCCCGACGAGGCG
AGCCATTACGTGCTCCTGTGCAACATTTACTCCGCTGCCGGCCTATGGGAGAAATCATCA
GAGGTGCGGAACAGGATGCGGCAGAGGGGCGTCAGCAAGGAACCCGGCTGCAGCTGGATC
GAACTCGACGGCGTCATCCACAGGTTCATGGCTGGCGAGTCTGCGCACCCAGAGAGCACG
CTGGTGCACGCGCACATGGACGCACTCTGGGAGCGGATGAGGAACCAGGGGTACACGCCA
GACACGTCGTCTGTGCTTCACGACATTGAGGAGAGCGAGAAGGCGGCGATCCTCCGGTAC
CACAGCGAGAAGCTCGCCATTGCCTTCGGGCTGCTGCGGACGCCACCTGGCGCAACCATC
AGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCATGAGGCTGCTAAATTCATCTCC
AGGATGGTGGGGAGGGAAATTGTGCTGAGGGACGTGAGAAGGTTTCACCATTTCGTGGAC
GGGGCCTGCTCCTGTGGGGATTACTGGTAG