Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d037009_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:6:108903771:108928531:1 gene:Zm00001d037009 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAD-binding Berberine family protein
Sequence	ATGGTCATCCGGAGCTTTGCAACAACATCACTCATCGCCGCTTTCTTCGCCATCGCGCAC CTTGCGGCCTGGGTTACACCACCACAAGCTGCTGCCACGGCTGCTCCGCCGTCGTCGCCT GATACCGCGTCCTTCCTCCGCTGCCTCGGCGCCCACCTCCCTCCGCAGGCCGTGTACACG AACGCGTCCCGGTCGTACACGTCCGTCCTCGAGTCCTCCATCAAGAACCTGCTGTTCGTG ACGCCGGCGACCCCGACGCCAGTCGCCATCGTGGCGGCCAGCAACGCGTCCCACGTCCAG GCCGCCGTGCGCTGCGGCGCCCGCCACGGCGTCGGCGTGCGCCCGCGCAGCGGCGGCCAC GACTACGAGGGCCTGTCCTACCGCTCCCTCAGCGCGAGGCGGCCCTTCGCCGTCGTCGAC CTGGCCAGGCTCCGCGCCGTCAGCGTCGACGCGAGGAACCGGACGGCGTGGGTCGGGTCG GGCGCCACCCTCGGCGAGCTCTACTACGCCATCGCGAGCCGCAGCGCGCGCCTGGGGTTC CCCGGCGGCGTCGGGCCGACGGTGGGCGTCGGAGGCCACCTCAGCGGCGGCGGCTTCGGG CTGCTGCTGCGGAAGCACGGCCTCGCCGCCGACCACGTCGTGGACGCCGTGGTGGTGGAC GCCGCGGGGAGGCTGCGGGACCGGGCCGCCATGGGCGAGGACCTCTTCTGGGCCATACGA GGCGGCGGCGGCGGGAGCTTCGGCGTCGTGCTGTCCTGGAAGCTGCGCCTCGTGCGCGTG CCGCCGGTCGTCGCCGTGTCCACCGTCCACCGGCCGAGGAACCAGTCCGCCAGCGCTCTC CTCGCCAGGTGGCAACACGTCGCGCCGGCGCTGCCCCGCGACGCCATCCTCCGCGTCGTC CTGCAGAACCAGGACGCGCAGTTCGAGTCCCTGTACCTCGGCACGTGCGCCGGCCTCGTC GCCACCATGGCGCGTAGGTTTCCGGAGCTCGGCATGGAGGCGCGGGACTGCATCGAGATG ACGTGGATCCAGTCCGTCCTCTACTTCGCGTTCTACGGCACGGGACAGCCGACGGAGCGG CTCCTGGACAGGGGGACCAAGCCGGAGCGGTACTTCAAGGGCAAGTCGGACTACGTGACC GAGCCCATGCCGAGCCACGTGTGGGAGAGCGCGTGGAGCTGGCTGCTCAAGGACGGCGCC GGGCTCCTGATCCTGGACCCCTACGGCGGCAGGATGCGCGGCGTCGCGCCTTCGGCGACG CCGTTCCCGCACCGGCGGGCTCTCTACAACCTCCAGTACTACGGGTTCTGGTTCCAGAAC GGGACGCGGGCGACGGAGAAGCATGTGGGCTGGATCAGGGGGCTGCACCGGGAGATGGAG CCGTACGTGAGCAAGAACCCCAGGGGCGCCTACGTGAACTACAGGGACCTGGACCTCGGC GTCAACCATGACGACCACCGTGGCCTGGCTAGCTACGAGAAGGCGAGGTTCGTGGAGGGG AAGTGGCTGGAGTGGATGGACACAGAGGTGAAACCCCAGGACGGCGAAGGCAAGCTCCCC ACCTCTATGCTGTTCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCC GAGATCACCACCCTTCTCGCGGCTATTCCAATCATCGGCTACGCGTGCATCCTCGACATC GGGTGGGAGTGGGCCGGCGTCATGTGGATATACAACGTCGTCACCTTCCTGCCAATGGAC ATGTTCAAGCTAGCCATCTGA

Peptide Sequence

PEP ID	Zm00001d037009_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:6:108903771:108928531:1 gene:Zm00001d037009 transcript:Zm00001d037009_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAD-binding Berberine family protein
Sequence	MVIRSFATTSLIAAFFAIAHLAAWVTPPQAAATAAPPSSPDTASFLRCLGAHLPPQAVYT NASRSYTSVLESSIKNLLFVTPATPTPVAIVAASNASHVQAAVRCGARHGVGVRPRSGGH DYEGLSYRSLSARRPFAVVDLARLRAVSVDARNRTAWVGSGATLGELYYAIASRSARLGF PGGVGPTVGVGGHLSGGGFGLLLRKHGLAADHVVDAVVVDAAGRLRDRAAMGEDLFWAIR GGGGGSFGVVLSWKLRLVRVPPVVAVSTVHRPRNQSASALLARWQHVAPALPRDAILRVV LQNQDAQFESLYLGTCAGLVATMARRFPELGMEARDCIEMTWIQSVLYFAFYGTGQPTER LLDRGTKPERYFKGKSDYVTEPMPSHVWESAWSWLLKDGAGLLILDPYGGRMRGVAPSAT PFPHRRALYNLQYYGFWFQNGTRATEKHVGWIRGLHREMEPYVSKNPRGAYVNYRDLDLG VNHDDHRGLASYEKARFVEGKWLEWMDTEVKPQDGEGKLPTSMLFGPRIIREKFTQLCSP EITTLLAAIPIIGYACILDIGWEWAGVMWIYNVVTFLPMDMFKLAI

Transcript Sequence

Transcript ID	Zm00001d037009_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:6:108903771:108928531:1 gene:Zm00001d037009 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAD-binding Berberine family protein
Sequence	ATGGTCATCCGGAGCTTTGCAACAACATCACTCATCGCCGCTTTCTTCGCCATCGCGCAC CTTGCGGCCTGGGTTACACCACCACAAGCTGCTGCCACGGCTGCTCCGCCGTCGTCGCCT GATACCGCGTCCTTCCTCCGCTGCCTCGGCGCCCACCTCCCTCCGCAGGCCGTGTACACG AACGCGTCCCGGTCGTACACGTCCGTCCTCGAGTCCTCCATCAAGAACCTGCTGTTCGTG ACGCCGGCGACCCCGACGCCAGTCGCCATCGTGGCGGCCAGCAACGCGTCCCACGTCCAG GCCGCCGTGCGCTGCGGCGCCCGCCACGGCGTCGGCGTGCGCCCGCGCAGCGGCGGCCAC GACTACGAGGGCCTGTCCTACCGCTCCCTCAGCGCGAGGCGGCCCTTCGCCGTCGTCGAC CTGGCCAGGCTCCGCGCCGTCAGCGTCGACGCGAGGAACCGGACGGCGTGGGTCGGGTCG GGCGCCACCCTCGGCGAGCTCTACTACGCCATCGCGAGCCGCAGCGCGCGCCTGGGGTTC CCCGGCGGCGTCGGGCCGACGGTGGGCGTCGGAGGCCACCTCAGCGGCGGCGGCTTCGGG CTGCTGCTGCGGAAGCACGGCCTCGCCGCCGACCACGTCGTGGACGCCGTGGTGGTGGAC GCCGCGGGGAGGCTGCGGGACCGGGCCGCCATGGGCGAGGACCTCTTCTGGGCCATACGA GGCGGCGGCGGCGGGAGCTTCGGCGTCGTGCTGTCCTGGAAGCTGCGCCTCGTGCGCGTG CCGCCGGTCGTCGCCGTGTCCACCGTCCACCGGCCGAGGAACCAGTCCGCCAGCGCTCTC CTCGCCAGGTGGCAACACGTCGCGCCGGCGCTGCCCCGCGACGCCATCCTCCGCGTCGTC CTGCAGAACCAGGACGCGCAGTTCGAGTCCCTGTACCTCGGCACGTGCGCCGGCCTCGTC GCCACCATGGCGCGTAGGTTTCCGGAGCTCGGCATGGAGGCGCGGGACTGCATCGAGATG ACGTGGATCCAGTCCGTCCTCTACTTCGCGTTCTACGGCACGGGACAGCCGACGGAGCGG CTCCTGGACAGGGGGACCAAGCCGGAGCGGTACTTCAAGGGCAAGTCGGACTACGTGACC GAGCCCATGCCGAGCCACGTGTGGGAGAGCGCGTGGAGCTGGCTGCTCAAGGACGGCGCC GGGCTCCTGATCCTGGACCCCTACGGCGGCAGGATGCGCGGCGTCGCGCCTTCGGCGACG CCGTTCCCGCACCGGCGGGCTCTCTACAACCTCCAGTACTACGGGTTCTGGTTCCAGAAC GGGACGCGGGCGACGGAGAAGCATGTGGGCTGGATCAGGGGGCTGCACCGGGAGATGGAG CCGTACGTGAGCAAGAACCCCAGGGGCGCCTACGTGAACTACAGGGACCTGGACCTCGGC GTCAACCATGACGACCACCGTGGCCTGGCTAGCTACGAGAAGGCGAGGTTCGTGGAGGGG AAGTGGCTGGAGTGGATGGACACAGAGGTGAAACCCCAGGACGGCGAAGGCAAGCTCCCC ACCTCTATGCTGTTCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCC GAGATCACCACCCTTCTCGCGGCTATTCCAATCATCGGCTACGCGTGCATCCTCGACATC GGGTGGGAGTGGGCCGGCGTCATGTGGATATACAACGTCGTCACCTTCCTGCCAATGGAC ATGTTCAAGCTAGCCATCTGATACGCGCTGAGCGGCAAGGCGTGGGGCACGCTATTGGAG CACAAGATCGCCTTCACCGCCAAGGGTCTGGACTGCATGTGATGGCTGGTTCACCATCGT CGTATTTGACCACGCCAAGTGGGTCGTCTCGTCGTCGCTTGGTTCTTTCAGCAGCAATGG CCTCACTATTTCTTCTAAATTACCAAGATTCTCGGACATGTACACTCTCACGATAGCAAG TGTAGACCCATAGTCTATCGCAGCAAACAAGCCAATCCATTTCACTAAGAGCGTGACAAA GTGATGATCGGCAATGAACATATTGAGCGCCATAATTTCTCTTTTGAGGAAACCAAGCCA GAATTCTGATC