Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d036989_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:6:108445740:108450130:1 gene:Zm00001d036989 gene_biotype:protein_coding transcript_biotype:protein_coding description:RPGR ORF15 isoform
Sequence	ATGTGTCCCGCTGCCGCCGCTCGACTAGCTTTTTTCCGCGCGTGCCAGTATGTATATACT GATCTGGAAACTGCTTCCCATGAAATTGCGATTAGATGCGTCCCCCAGGAGCTGAGAGCA GAAATTGCTAGCCAGTTTGCTTTATTTGTGCTTGGTGGTTGTTACTTGAACCATGGTCTA AACATGCTTCATCGTTCAAATAGCCGGAACCAAAGGAACAGGGGATCAAGAATCAAAACA CTACTCCAAGCTACCTTGCTTATAGGTGTTATTTTTTGGCTCCTATATCAGGTGAAGCAT TCCTATGATAAGAAAAATGAGTACTTGGATGATGCTGAGGATCAGCTTGCCCATAATGAT ATAAGCATGTTCCAGGGGAGGAAAGAAAAGGCAGGTAGTTACAGTGATAGCAATATCCAA ATGGTTGACGACAATTCTGATGTAACGACTAAACCAGAAGAACGTGATGCAGATCACCAT TCAGATACTTTTAATTATAATGAGAAGACTGGAGAAACTGTGTTCGATAAAGACAGTACT AACTTGAATGAAGATGACAAGAGAAACACTGAGAGGTCAGAAGCGGAAGGACAAGTCAAC AGTGCAGATGGTAATACAGAAGTTAATAATAATAACAATGAAGATGAAACTACCGGTCAT GCAGAAGAAGGCAAGCATGATACTGAATCCAACTCTGCTGCTGAGAGTAAAAGTGAAGTC AATTCAACTGGAGATGATATGTCCCGAAACAATTATGCACAAGAGGAAAACACTGGGGAG GCAAGTGGAACGTCTCATGAAGTGGTGCAAGGTGAACAATCGACCAGTGCAAGTGGAAGC GGGAATGGATCGGATGGAGATGGTGAGAAAAATGAGGCAGTTGATATTAAAAGTGGTTCT GAATCCCTTCCTGATGATGCCAAGGCTGAAGCAACTGATGACCGTGCTACTGTCAGTCTT CCTGATGAAACCGGGAATATACCATCAGTTCATACTGATAATTCGCAAAATGATGCCAGT GAAAACCAAGGTGATGCAACTTACACTACCTCGGATTCGTCTGAGCATGGCATTGTTGAG GCTGTCCATATTGAAACTGGATTGGAAGATGAAAGTGCAACAGCATCATCTGGGACTGGA TCTGGTGATGACAACGGTAACTCATCTGATAGCGCCTCTGCAGAAGAAAATACTGAGACT GTATCTGGTGATGATGAGAAGGGCATGGGAACAGGTACAACCACTGAAGCGTCATATTCC ATACAACAGAACTCTGAGAACAGCAGTGTCTCAGCTGAGGCAGAGAACTCCCAAGGGGAT TCTTCCAGCGGAGTGAATGGTTCTTCAGAAGAGACATCTAACAAGGGTGATGGAGCTACA GAAACGTATAACAAGGGTGAGCAGGTGGATCCCAAGATTGAAACTAGCACATCCACCAAT GCCGAGCATAATGAATCTCAAGGGGCTGATGGCAGCTCTGGATCAAATGGTAACGGCCCT GAACAAACCGGTAAATCTGAAAGCCAGTGA

Peptide Sequence

PEP ID	Zm00001d036989_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:6:108445740:108450130:1 gene:Zm00001d036989 transcript:Zm00001d036989_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:RPGR ORF15 isoform
Sequence	MCPAAAARLAFFRACQYVYTDLETASHEIAIRCVPQELRAEIASQFALFVLGGCYLNHGL NMLHRSNSRNQRNRGSRIKTLLQATLLIGVIFWLLYQVKHSYDKKNEYLDDAEDQLAHND ISMFQGRKEKAGSYSDSNIQMVDDNSDVTTKPEERDADHHSDTFNYNEKTGETVFDKDST NLNEDDKRNTERSEAEGQVNSADGNTEVNNNNNEDETTGHAEEGKHDTESNSAAESKSEV NSTGDDMSRNNYAQEENTGEASGTSHEVVQGEQSTSASGSGNGSDGDGEKNEAVDIKSGS ESLPDDAKAEATDDRATVSLPDETGNIPSVHTDNSQNDASENQGDATYTTSDSSEHGIVE AVHIETGLEDESATASSGTGSGDDNGNSSDSASAEENTETVSGDDEKGMGTGTTTEASYS IQQNSENSSVSAEAENSQGDSSSGVNGSSEETSNKGDGATETYNKGEQVDPKIETSTSTN AEHNESQGADGSSGSNGNGPEQTGKSESQ

Transcript Sequence

Transcript ID	Zm00001d036989_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:6:108445740:108450130:1 gene:Zm00001d036989 gene_biotype:protein_coding transcript_biotype:protein_coding description:RPGR ORF15 isoform
Sequence	ATGTGTCCCGCTGCCGCCGCTCGACTAGCTTTTTTCCGCGCGTGCCAGTATGTATATACT GATCTGGAAACTGCTTCCCATGAAATTGCGATTAGATGCGTCCCCCAGGAGCTGAGAGCA GAAATTGCTAGCCAGTTTGCTTTATTTGTGCTTGGTGGTTGTTACTTGAACCATGGTCTA AACATGCTTCATCGTTCAAATAGCCGGAACCAAAGGAACAGGGGATCAAGAATCAAAACA CTACTCCAAGCTACCTTGCTTATAGGTGTTATTTTTTGGCTCCTATATCAGGTGAAGCAT TCCTATGATAAGAAAAATGAGTACTTGGATGATGCTGAGGATCAGCTTGCCCATAATGAT ATAAGCATGTTCCAGGGGAGGAAAGAAAAGGCAGGTAGTTACAGTGATAGCAATATCCAA ATGGTTGACGACAATTCTGATGTAACGACTAAACCAGAAGAACGTGATGCAGATCACCAT TCAGATACTTTTAATTATAATGAGAAGACTGGAGAAACTGTGTTCGATAAAGACAGTACT AACTTGAATGAAGATGACAAGAGAAACACTGAGAGGTCAGAAGCGGAAGGACAAGTCAAC AGTGCAGATGGTAATACAGAAGTTAATAATAATAACAATGAAGATGAAACTACCGGTCAT GCAGAAGAAGGCAAGCATGATACTGAATCCAACTCTGCTGCTGAGAGTAAAAGTGAAGTC AATTCAACTGGAGATGATATGTCCCGAAACAATTATGCACAAGAGGAAAACACTGGGGAG GCAAGTGGAACGTCTCATGAAGTGGTGCAAGGTGAACAATCGACCAGTGCAAGTGGAAGC GGGAATGGATCGGATGGAGATGGTGAGAAAAATGAGGCAGTTGATATTAAAAGTGGTTCT GAATCCCTTCCTGATGATGCCAAGGCTGAAGCAACTGATGACCGTGCTACTGTCAGTCTT CCTGATGAAACCGGGAATATACCATCAGTTCATACTGATAATTCGCAAAATGATGCCAGT GAAAACCAAGGTGATGCAACTTACACTACCTCGGATTCGTCTGAGCATGGCATTGTTGAG GCTGTCCATATTGAAACTGGATTGGAAGATGAAAGTGCAACAGCATCATCTGGGACTGGA TCTGGTGATGACAACGGTAACTCATCTGATAGCGCCTCTGCAGAAGAAAATACTGAGACT GTATCTGGTGATGATGAGAAGGGCATGGGAACAGGTACAACCACTGAAGCGTCATATTCC ATACAACAGAACTCTGAGAACAGCAGTGTCTCAGCTGAGGCAGAGAACTCCCAAGGGGAT TCTTCCAGCGGAGTGAATGGTTCTTCAGAAGAGACATCTAACAAGGGTGATGGAGCTACA GAAACGTATAACAAGGGTGAGCAGGTGGATCCCAAGATTGAAACTAGCACATCCACCAAT GCCGAGCATAATGAATCTCAAGGGGCTGATGGCAGCTCTGGATCAAATGGTAACGGCCCT GAACAAACCGGTAAATCTGAAAGCCAGTGATTTCCACCATCGAGAGTTCGAGACACGAAT TTAGTATACAGGTTTGTTTTCTGGAGATTGAAGAGGGGATAGTGCACATAGAAAAACTGT TCACTGTGGTTTATCGAGATTTTAGTCGATACTGCCGAAGTATAATTGTGCAGATCGCAA GATTGGTTGTCTGCTATGCTTATTGCTTATGGCATGATTTCTCGTCAAGTTGTACTTGAG TCAATATTTCTGTACGGTTATTAATCTCGACATGGTACTCTGTTCATTGTTGGATATTAT GACAGTCTTACAATATTCTGCAGTGTGGCCGAAATGCCCTTTGCCCGTTTTGATCACTGC GGGTACCTGTGGGTTTATACGCTCATGTTTCTCATTTACGGTCATTTTTTTTAGAGCCTT GAGAGGGGAAAGCCTGATTTCAATCGGTCTACTATGTAACCCGCATAAAAGCATTTTATA TGTTGAGCAG