Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d036977_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:108070822:108076516:-1 gene:Zm00001d036977 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nuclear poly(A) polymerase 2
Sequence

ATGGCCAGCGGCTCTGATGCCCCGAAGCAGTATGGAATAACCAAGCCGTTGTCGTTGCTC
GGACCGGTGGAGGCCGACCTCCAGAGGACGGAGGAGCTAGAGAAGTTCTTGCTCGAGTCG
GGTCTCTATGAGAGCCCTGACGAATCTGCTAGGCGGGAGGAGGTGCTGGGGAAGCTTGAC
CAGATTGTAAAAGACTGGGTAAAACAATTGACTAGTCAGAGAGGATACACTGATCAAATG
GTTGAAGAGGCAAATGCTGTACTCTTCACCTTTGGCTCATACCGTCTTGGGGTTCATGGA
CCTGGAGCTGATATTGATACCCTCTGTGTTGGACCTTCATATGTGAACCGTGAGGAAGAT
TTTTTTATTGTACTGCATGGGATATTAGCACAAACAGAGGATGTGACCGAGCTGCAGCCT
GTACCTGATGCACATGTCCCTGTTATGAAATTCAAGTTCCATGGAATATCTATTGACCTT
CTTTATGCCAGTGTCTCCCTCTTAGTAGTACCAGCTGACTTGGATATCTCCCAAGGATCA
GTGCTTTATGATGTTGATGAAGCTACTGTCCGTAGTCTTAATGGGTGCAGAGTAGCAGAC
CAAATCATTAGACTTGTTCCAAATTTTGAGAATTTTCGCACGGCATTAAGATGTTTGAAG
TACTGGGCAAAAAGGAGAGGTGTTTACTCTAATGTTACTGGCTTTCTTGGTGGTGTCAAC
TGGGCTTTACTGGTTGCGCGTGTCTGCCAGCTCTATCCCAATGCTGTGCCAAGTATGCTG
GTCTCACGGTTTTTTAGAGTTTTTACACAATGGCAGTGGCCAAACCCGGTTATGCTTTGT
TCTATAGAAGAGGAAGAACTTGGTTTCCCTGTTTGGGATCCACGCAAAAATCCTCGAGAT
AGATGTCATCATATGCCTATTATAACCCCTGCGTACCCATGCATGAATTCAAGCTATAAT
GTTTCCACAAGCACACTGAGGGTTATGTTGGAACAATTCCAGTTTGGTAATAGAATTTGC
CAGGAAATTGAAATGAATAAGACCAGCTGGCCTGCTCTGTTTGAGCCTTTTCAATTTTTT
GAAGCATACAAGAATTATCTACAGGTTGACATCATTGCTGAGGATGATGAAGACCTTAGG
CTTTGGAAAGGATGGGTTGAATCTCGATTGCGGCAACTAACTTTGAAGATTGAACGTGAT
ACATATGGAATGCTACAGTGTCATCCTTACCCACATGAATATGCAGACCCTTCTAGGCAG
TGTGCTCATTGTGCTTTCTTCATGGGCTTGTCAAGGAAAGAAGGTGTGAAAATACAGGAA
GGACAACAGTTCGATATTCGAGGAACGGTGGATGAGTTCAGGCATGAAATCAACATGTAT
ATGTTCTGGAAGCCTGGGATGGAGTTAGCTGTTTCTCATGTTCGTAGGAAGCAGGTCCCA
GCTTATGTGTTTCCAGAGGGTTATAAAAGACCTCGCCCTTCAAGACATGTGAACCATCAG
TCTGATAAAAATGACACTGAAGATGGCACAGCGACCAGGTCTCCAGACAGTCAACTGAAG
AGAAAGCATGATTCTGTTGGAACTGATGATATCAGGTATGCAAAGAGGTCATCGACCAGC
CCAGTTCATCCGAAAAATTCACCTCAATCTGGAAGCACTGGCGATGAGACTAGATGTAAC
AACCAAATAAAAAGGGCTCCTAGCGATGCAAGTGGTGGCAGTCCGGCTTCACCTCAGGCA
TCAGAGAGAAGCCCAGATACTATTCTGTCTGCCCCTAGGTGCACGACAACAGGAGCAGTG
TGTTCTGGTGATGCAATTAGTAAGCATAGTAGTGTTCCTCTTGTTGAGAACTGCACCACT
CCGACTGTAGCAGTGTGCACAACTTTGAAGCGCGTAGCTGAGAAAGTTGTTTCAGAGCTA
GTTGGAAGTGAAAGGCTGGGGAGCAACAACAGTGCGGAATTGTTGGAGAGTATGGAAAAG
GAGGATGTCCTTGCTGAAAATGTTCGTTTTGGCGGGAATGGAGTTGCGCAAGGTGGCCTT
CCAGAAGAGTTAGAGGTGATGCTTCTGGTGCACCCTTCTCCTGTTTATGCGCTGTCTAAC
ATGATCTGA

Peptide Sequence

PEP ID

Zm00001d036977_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:108070822:108076516:-1 gene:Zm00001d036977 transcript:Zm00001d036977_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nuclear poly(A) polymerase 2
Sequence

MASGSDAPKQYGITKPLSLLGPVEADLQRTEELEKFLLESGLYESPDESARREEVLGKLD
QIVKDWVKQLTSQRGYTDQMVEEANAVLFTFGSYRLGVHGPGADIDTLCVGPSYVNREED
FFIVLHGILAQTEDVTELQPVPDAHVPVMKFKFHGISIDLLYASVSLLVVPADLDISQGS
VLYDVDEATVRSLNGCRVADQIIRLVPNFENFRTALRCLKYWAKRRGVYSNVTGFLGGVN
WALLVARVCQLYPNAVPSMLVSRFFRVFTQWQWPNPVMLCSIEEEELGFPVWDPRKNPRD
RCHHMPIITPAYPCMNSSYNVSTSTLRVMLEQFQFGNRICQEIEMNKTSWPALFEPFQFF
EAYKNYLQVDIIAEDDEDLRLWKGWVESRLRQLTLKIERDTYGMLQCHPYPHEYADPSRQ
CAHCAFFMGLSRKEGVKIQEGQQFDIRGTVDEFRHEINMYMFWKPGMELAVSHVRRKQVP
AYVFPEGYKRPRPSRHVNHQSDKNDTEDGTATRSPDSQLKRKHDSVGTDDIRYAKRSSTS
PVHPKNSPQSGSTGDETRCNNQIKRAPSDASGGSPASPQASERSPDTILSAPRCTTTGAV
CSGDAISKHSSVPLVENCTTPTVAVCTTLKRVAEKVVSELVGSERLGSNNSAELLESMEK
EDVLAENVRFGGNGVAQGGLPEELEVMLLVHPSPVYALSNMI

Transcript Sequence

Transcript ID

Zm00001d036977_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:108070822:108076516:-1 gene:Zm00001d036977 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nuclear poly(A) polymerase 2
Sequence

ACACAACGAACACTCCGTTTCTCTCTCTACGACCAAATATCCGATTAACCCCTCTCATAT
TTTCCCTACCTTCACTGTCCTCCTGGGAAGAAATAGACGGACGGATAGCCCACAGAACGC
ACGCGCTACCTTTTCTCTCTCTACGACCTTCCCCTTACCTATTCGCCGTCCCTCTCTCCT
GCTGCCCTCCCCCCGCCGCCGCCCTACGGCCCACCCCGCCGACGCGCCACCTCCGTATCT
CTCTTCCCCGCCTACGCGGGCGGCGGATCTCCGGATCCGCGCGGGGGAGGGAGATCTGGA
TTGGATGGTCCTCTCCGGCCGCGGCTAGTCCGGCCTGATCTGATCCGACCCGTCCCGGCG
GCGCAGTCCGGGCAGGTTGTCTGGGAAATTTCGGACTCGGGCGGTGTTGATCCCGGGGAG
AGGTCGTGCCTCGCTCGATCTCCGCATAAAAGCTGTGATTTTGTGGCGGCGCGGCTGCGA
GTTACCGGGATTTTCCCAGGGTTTCCGGCGGCCGATCCGCGCTAGTTACGCTATTCTGTT
CCGTCAGGGCGGCCTCGTGTTGGGGGCTCGTTTATTTGCCGCGTCCCGGAGGAGGGTTTT
GTGTTCTTCTGTCGTTGGCTCCATGGCCAGCGGCTCTGATGCCCCGAAGCAGTATGGAAT
AACCAAGCCGTTGTCGTTGCTCGGACCGGTGGAGGCCGACCTCCAGAGGACGGAGGAGCT
AGAGAAGTTCTTGCTCGAGTCGGGTCTCTATGAGAGCCCTGACGAATCTGCTAGGCGGGA
GGAGGTGCTGGGGAAGCTTGACCAGATTGTAAAAGACTGGGTAAAACAATTGACTAGTCA
GAGAGGATACACTGATCAAATGGTTGAAGAGGCAAATGCTGTACTCTTCACCTTTGGCTC
ATACCGTCTTGGGGTTCATGGACCTGGAGCTGATATTGATACCCTCTGTGTTGGACCTTC
ATATGTGAACCGTGAGGAAGATTTTTTTATTGTACTGCATGGGATATTAGCACAAACAGA
GGATGTGACCGAGCTGCAGCCTGTACCTGATGCACATGTCCCTGTTATGAAATTCAAGTT
CCATGGAATATCTATTGACCTTCTTTATGCCAGTGTCTCCCTCTTAGTAGTACCAGCTGA
CTTGGATATCTCCCAAGGATCAGTGCTTTATGATGTTGATGAAGCTACTGTCCGTAGTCT
TAATGGGTGCAGAGTAGCAGACCAAATCATTAGACTTGTTCCAAATTTTGAGAATTTTCG
CACGGCATTAAGATGTTTGAAGTACTGGGCAAAAAGGAGAGGTGTTTACTCTAATGTTAC
TGGCTTTCTTGGTGGTGTCAACTGGGCTTTACTGGTTGCGCGTGTCTGCCAGCTCTATCC
CAATGCTGTGCCAAGTATGCTGGTCTCACGGTTTTTTAGAGTTTTTACACAATGGCAGTG
GCCAAACCCGGTTATGCTTTGTTCTATAGAAGAGGAAGAACTTGGTTTCCCTGTTTGGGA
TCCACGCAAAAATCCTCGAGATAGATGTCATCATATGCCTATTATAACCCCTGCGTACCC
ATGCATGAATTCAAGCTATAATGTTTCCACAAGCACACTGAGGGTTATGTTGGAACAATT
CCAGTTTGGTAATAGAATTTGCCAGGAAATTGAAATGAATAAGACCAGCTGGCCTGCTCT
GTTTGAGCCTTTTCAATTTTTTGAAGCATACAAGAATTATCTACAGGTTGACATCATTGC
TGAGGATGATGAAGACCTTAGGCTTTGGAAAGGATGGGTTGAATCTCGATTGCGGCAACT
AACTTTGAAGATTGAACGTGATACATATGGAATGCTACAGTGTCATCCTTACCCACATGA
ATATGCAGACCCTTCTAGGCAGTGTGCTCATTGTGCTTTCTTCATGGGCTTGTCAAGGAA
AGAAGGTGTGAAAATACAGGAAGGACAACAGTTCGATATTCGAGGAACGGTGGATGAGTT
CAGGCATGAAATCAACATGTATATGTTCTGGAAGCCTGGGATGGAGTTAGCTGTTTCTCA
TGTTCGTAGGAAGCAGGTCCCAGCTTATGTGTTTCCAGAGGGTTATAAAAGACCTCGCCC
TTCAAGACATGTGAACCATCAGTCTGATAAAAATGACACTGAAGATGGCACAGCGACCAG
GTCTCCAGACAGTCAACTGAAGAGAAAGCATGATTCTGTTGGAACTGATGATATCAGGTA
TGCAAAGAGGTCATCGACCAGCCCAGTTCATCCGAAAAATTCACCTCAATCTGGAAGCAC
TGGCGATGAGACTAGATGTAACAACCAAATAAAAAGGGCTCCTAGCGATGCAAGTGGTGG
CAGTCCGGCTTCACCTCAGGCATCAGAGAGAAGCCCAGATACTATTCTGTCTGCCCCTAG
GTGCACGACAACAGGAGCAGTGTGTTCTGGTGATGCAATTAGTAAGCATAGTAGTGTTCC
TCTTGTTGAGAACTGCACCACTCCGACTGTAGCAGTGTGCACAACTTTGAAGCGCGTAGC
TGAGAAAGTTGTTTCAGAGCTAGTTGGAAGTGAAAGGCTGGGGAGCAACAACAGTGCGGA
ATTGTTGGAGAGTATGGAAAAGGAGGATGTCCTTGCTGAAAATGTTCGTTTTGGCGGGAA
TGGAGTTGCGCAAGGTGGCCTTCCAGAAGAGTTAGAGGTGATGCTTCTGGTGCACCCTTC
TCCTGTTTATGCGCTGTCTAACATGATCTGA