Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d036827_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:6:102933402:102939600:-1 gene:Zm00001d036827 gene_biotype:protein_coding transcript_biotype:protein_coding description:Microtubule-associated protein MAP65-1a

Sequence

ATGGATTTTGTGGGCACTGTTACTAAAGTTCATCCAAGTCTTGATGACTCTGTTGGTGTC
CAATCCAAGAGCATTAGTGGCGAAACAATATCCAAGCTGTCTAAAATGGTGATTGTACTT
GAAGAAGAAAAATCGAAGAGGTTTGCAAAGATTCAAGCTCTAGCTTCCCAGCTATCTGAT
CTTTGGAACTTAATGGATTCTCCTGTGGAGGAACAGCAACCTTTTCGTCACGTAACATGC
ATAATGTCCTCAACATTGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATT
CAGCAGGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAGGAT
ATTGCATTCAAGAAACAGACTGAACTTGAAGATATATATGCCCGGGCTCATGTTGCAGTA
GATTCTAGTGCTGCAAGAGATAGGATAATGTCTATTATTGAGTCCAGTAGTTTCGAGCCT
TCAGAACTACTGGCTGATATGGAGAACCAGATACTTAAAGCAAATGAGGAGTCCTTAAGC
AGAAAGGACATATTGGAGAGGGTTGATAGGTGGATGTCAGCATGTGAAGAAGAAAGCTGG
CTTGAAGACTACAGCCGGGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAAT
CTGAAGCGTGCAGAAAAGGCCCGTGTTTTGGTCAATAAAATTCCGGCTATTGTTGACACA
CTGCTTGCAAAGACCCGGGCATGGGAACAAGAGCATGGCGTGGCCTTCACCTACGACGGC
GTCCCTCTTCTTGCGATGCTGGACGAATACAAAATCCTGAGGCAGGAGAAGGAAGACGAG
AAGCGACGAATGAGGGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAG
CTGTTCGGGTCAAAACCGAGCCCCGCGCGGCCGCAGTCGTCCTCGAGGAAGGTGGCTGGC
GCACGGACCAACGGCGGTGGCACGCCAGCTCGCAGGCTGTCGGCCCTCCAGAGCGGCGGC
AGGACCGCTAGCCGGGATGGGAGGAGGGATGCGAGCAGGCCCGTGGCCCCCGTGAACTAC
GTCGCCATCGCCAAGGAGGACGTGGCCTCGCAGGCGTCCAGCAACCACACTGGGCCGTCC
ACCCCCTGA

Peptide Sequence

PEP ID

Zm00001d036827_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:6:102933402:102939600:-1 gene:Zm00001d036827 transcript:Zm00001d036827_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Microtubule-associated protein MAP65-1a

Sequence

MDFVGTVTKVHPSLDDSVGVQSKSISGETISKLSKMVIVLEEEKSKRFAKIQALASQLSD
LWNLMDSPVEEQQPFRHVTCIMSSTLDDVIVPGALALDVIQQAELEVERLDQLKASRMKD
IAFKKQTELEDIYARAHVAVDSSAARDRIMSIIESSSFEPSELLADMENQILKANEESLS
RKDILERVDRWMSACEEESWLEDYSRDDNRYSATRGAHLNLKRAEKARVLVNKIPAIVDT
LLAKTRAWEQEHGVAFTYDGVPLLAMLDEYKILRQEKEDEKRRMRDQKKMNEQLAAEQEK
LFGSKPSPARPQSSSRKVAGARTNGGGTPARRLSALQSGGRTASRDGRRDASRPVAPVNY
VAIAKEDVASQASSNHTGPSTP

Transcript Sequence

Transcript ID

Zm00001d036827_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:102933402:102939600:-1 gene:Zm00001d036827 gene_biotype:protein_coding transcript_biotype:protein_coding description:Microtubule-associated protein MAP65-1a

Sequence

GCCGTTCTCTGTCAGTTTGTCACCCTGCCTCTGACGAAAACTCTCCTCTGACTCCGCTCC
ACCCCCTTCTCTCACTTGTCTATCGGCGGCCGTCACCTCCGCTGGGCTGCTGGCCTCCCC
ACTTTGCAGTTGCTGCACAGGCAAGACACGGAGGCAGGCACCACGAGTCCACGACGCCCG
CTCGCGCGCTCCGTGAATCCCCTCGTGACTCGTGAGGGCTCGAGGCCCGACGGGAGGACG
AGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGGCTGCTGAGTGAAAATGGG
AGTGGCAGGTCACAACGATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCA
ACTTCAGCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACT
TCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATCAGGCTTCTAGCTC
CAGGTCATGTCTCCTCCAACAGCTTTCCAACTCCAAATCGGAACTGACTAGACTCCTTTC
TGCATTAGGAGAGTCATCTATTTCTGGTGCTCCTAATTTTTGCAGCCTGACAAGACATCT
GGTACAATCAAGGAGCAACTAGCAGCTATATCACCATCTTTAGAGACACTCCGCAGGAAA
AAAGAGAGTAGGGTGAAAGAGTTTGCTCATGTACAACTTCAGATTCAGATACTTCGTGAT
GAAATTGCTGGGGATCTACATATTGGTGAACAGTTGGAAACACCCCATGTTAATGCGGAT
GATCTTTCAGTGAGGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAA
AAGAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCTGTTCT
GTACTTGGCATGGATTTTGTGGGCACTGTTACTAAAGTTCATCCAAGTCTTGATGACTCT
GTTGGTGTCCAATCCAAGAGCATTAGTGGCGAAACAATATCCAAGCTGTCTAAAATGGTG
ATTGTACTTGAAGAAGAAAAATCGAAGAGGTTTGCAAAGATTCAAGCTCTAGCTTCCCAG
CTATCTGATCTTTGGAACTTAATGGATTCTCCTGTGGAGGAACAGCAACCTTTTCGTCAC
GTAACATGCATAATGTCCTCAACATTGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTT
GATGTAATTCAGCAGGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGG
ATGAAGGATATTGCATTCAAGAAACAGACTGAACTTGAAGATATATATGCCCGGGCTCAT
GTTGCAGTAGATTCTAGTGCTGCAAGAGATAGGATAATGTCTATTATTGAGTCCAGTAGT
TTCGAGCCTTCAGAACTACTGGCTGATATGGAGAACCAGATACTTAAAGCAAATGAGGAG
TCCTTAAGCAGAAAGGACATATTGGAGAGGGTTGATAGGTGGATGTCAGCATGTGAAGAA
GAAAGCTGGCTTGAAGACTACAGCCGGGACGATAACAGGTACAGTGCAACTCGGGGTGCA
CATCTGAATCTGAAGCGTGCAGAAAAGGCCCGTGTTTTGGTCAATAAAATTCCGGCTATT
GTTGACACACTGCTTGCAAAGACCCGGGCATGGGAACAAGAGCATGGCGTGGCCTTCACC
TACGACGGCGTCCCTCTTCTTGCGATGCTGGACGAATACAAAATCCTGAGGCAGGAGAAG
GAAGACGAGAAGCGACGAATGAGGGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAA
CAGGAGAAGCTGTTCGGGTCAAAACCGAGCCCCGCGCGGCCGCAGTCGTCCTCGAGGAAG
GTGGCTGGCGCACGGACCAACGGCGGTGGCACGCCAGCTCGCAGGCTGTCGGCCCTCCAG
AGCGGCGGCAGGACCGCTAGCCGGGATGGGAGGAGGGATGCGAGCAGGCCCGTGGCCCCC
GTGAACTACGTCGCCATCGCCAAGGAGGACGTGGCCTCGCAGGCGTCCAGCAACCACACT
GGGCCGTCCACCCCCTGACCGGCCGTGCCAGCAGTAACTGAACTGTTGTGGCGGTGCTTA
GATATATATATACCAGTGCAGTGCAGTAGTCAGAGCTGATTGTAGATCGGATAATGGAAA
AAAACAAACGAAGCTGGATATGGTATCACACATTATCAGTT