Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d036598_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:6:94024133:94027882:-1 gene:Zm00001d036598 gene_biotype:protein_coding transcript_biotype:protein_coding description:Geranylgeranyl transferase type-2 subunit alpha 1
Sequence

ATGCACGGCCGGCCGCGGCGCCCGGCCAAGCCTGAGGACGACGAGGCGGCGTCAGCGAAA
GCCGCCAAGCTCCGGGACCTCCAGGCCCAGGTCCTGCACAATCACCATGCCCGCACGTAC
ACAAAGGAGTCAATTGGGCTGAGCTTCAAGCTGCTCGAGACAAATCCAGAGGCCTACACG
GCATGGAACTACCGGAAGCTTGCGTTGCAGCACAATGTCAAGGAGCTTTCTGACCCACAG
GCCATCAAGTCTGCTATTGATGATGAGCTGAGAGTGGCTGAGGTTGCTTTAAGGCAGAAC
CCAAAGTCCTATGGGGCTTGGTATCACCGGAAGTGGTTGCTAAACCAAAAGCTAGCGCCT
GTGGATTTCAAATATGAGCTTGGCCTCTTGGATAAACTGTTAAAGGTGGACGCCAGGAAT
TTCCATGGATGGAATTACCGAAGGTTCCTTGCGAGATTCATGGGTTTGCCAGATGATGAG
GAGCTTAAGTATACGATGGATAAAATCAGTGACAACTTCAGTAATTACTCAGCATGGCAT
AATCGTAGTATACTTCTGTCCAACCTACTAATCCAGCAGAGCAAAGGTTTTGAGTCAAAG
CAGAAGATTTTTTCCGAGGAGTTTGAACTTGTTACTCAAGCTCTTTTTACAGATCCAAGT
GACCAAAGTGGATGGTTCTATCACCTCTGGCTTTTAGCTCAAACATCTAGTCCAGATAAC
CCACAGCTGATTGCTTCATGGCCTTCTAATGCTGCAAAGCTCAGTTTCTCTTTTATCAAG
GAAAAGGCTGAGCAGCACACACTGTCATCCGTCTGGTCAAGGACTGTACCCATTGTTCTT
TATTTTAATGAGCCTGTCAAAGGATTAAATCATTCAAGTGTGAACTTAAAGTCTGATTTG
GAGTTCGGTAAGGATATCCAATGGAGGCCCCTCACAATGGCAGACTCTGGGTACTCTAAA
TGTTGGGCCACATATCTTCAAATTACAAATGAATGTAGCAGTTTGCAGGAATATTCTGTT
GAAATGAGCATACCCTGCTCGGATGACATTGTGTCTAGAAGTGGCTCTAACTACAACTGT
CCTGTGCATTTTACATTTTACATTGAACTGATCAGCAACAACGCAGCCCAGGGTTTAGAT
ACGTTTGATAAGCCAGTTGCCTGGAATTGCTCAGACTCATTCCAGTCTCATGGAAACCGT
GATCCTATCCCTTTGGATCTGCTAAACATTACTAGTGCCTTGGTCGAACATGACTCAGAT
TGGCATTTTGAAAGGCTGTCTGAGGAGATAGATCTTTTCAGAGAGTTAGCTGATGACAAT
AGCAAGTTTGGGAAGTTGACATTAGCCCGGCTATTGCTTGCTTGTGCTGCTATAAAATCC
CGTGGAAGATCTCTAATTGAAAGGAAGGGATACTGTGAAGAGGCACTGGGGCTCTTCACT
GACTTGATTCACCTGGATCCATCTCATAAGCAGTACTATGAGGATGAACGGAGCTTAGCC
CTGATGGATAAGTTAACATGTGACATGGAGACTTTCACGAAGCATTGTTCTGTTCAGGTT
CAACCAAATTCAGCTCCCCTGCATCATGTGCAGTTTCGCAGATTGTCTGTAACACGCATC
GGATTTGCTGAGCGCCTGTTGTGGGTTCAAATGCTGGACCTAAGCCATAATAGTCTTAGA
TCAGTCGAAGGTTTGGAGGCTTTGCAGCGCCTTGTGTTCTTGAACATCAGCAACAACCAG
ATCAGTAGTTTCACAGCACTTGAACCCCTTACGAAGATAATCTCACTGAAAGTTCTGGAT
TTGTCGTTCAACGAGATTGGAGCTCACTCAATTGACACAGCACGGTATATCTGCCCGTCT
CCGTTCTCACACAAAACTGAAGCAAGTGAAGCTTTTGAAGAGTACCAGGAGGTAAATAAT
ATCAACGTGACGGAATACTGGGACGCCATATTGTTCTTCAGATCTTTGAAGCTGGCACAG
CTTGATATCAGAGGAAATGCAGTTGCCAGCAAGGACGGCTTCAGAACTCTTGTCGTGACG
CTCATTCCTTGTCTAAAATGGTTTGATGGTGAAGTTCCACTTAGGAGTTGGGCAATCTTG
GTAGTGTCAAGGCTCACTATGTGA

Peptide Sequence

PEP ID

Zm00001d036598_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:6:94024133:94027882:-1 gene:Zm00001d036598 transcript:Zm00001d036598_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:Geranylgeranyl transferase type-2 subunit alpha 1
Sequence

MHGRPRRPAKPEDDEAASAKAAKLRDLQAQVLHNHHARTYTKESIGLSFKLLETNPEAYT
AWNYRKLALQHNVKELSDPQAIKSAIDDELRVAEVALRQNPKSYGAWYHRKWLLNQKLAP
VDFKYELGLLDKLLKVDARNFHGWNYRRFLARFMGLPDDEELKYTMDKISDNFSNYSAWH
NRSILLSNLLIQQSKGFESKQKIFSEEFELVTQALFTDPSDQSGWFYHLWLLAQTSSPDN
PQLIASWPSNAAKLSFSFIKEKAEQHTLSSVWSRTVPIVLYFNEPVKGLNHSSVNLKSDL
EFGKDIQWRPLTMADSGYSKCWATYLQITNECSSLQEYSVEMSIPCSDDIVSRSGSNYNC
PVHFTFYIELISNNAAQGLDTFDKPVAWNCSDSFQSHGNRDPIPLDLLNITSALVEHDSD
WHFERLSEEIDLFRELADDNSKFGKLTLARLLLACAAIKSRGRSLIERKGYCEEALGLFT
DLIHLDPSHKQYYEDERSLALMDKLTCDMETFTKHCSVQVQPNSAPLHHVQFRRLSVTRI
GFAERLLWVQMLDLSHNSLRSVEGLEALQRLVFLNISNNQISSFTALEPLTKIISLKVLD
LSFNEIGAHSIDTARYICPSPFSHKTEASEAFEEYQEVNNINVTEYWDAILFFRSLKLAQ
LDIRGNAVASKDGFRTLVVTLIPCLKWFDGEVPLRSWAILVVSRLTM

Transcript Sequence

Transcript ID

Zm00001d036598_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:94024133:94027882:-1 gene:Zm00001d036598 gene_biotype:protein_coding transcript_biotype:protein_coding description:Geranylgeranyl transferase type-2 subunit alpha 1
Sequence

CTACTTGGTTGGAAGGGTGAACGGCCGCTCCCCCTCCCTAAGATCCAAACCCCGGCACCC
GCGGCGCCGGCGACGCAGGGAGGAGGCGATGCACGGCCGGCCGCGGCGCCCGGCCAAGCC
TGAGGACGACGAGGCGGCGTCAGCGAAAGCCGCCAAGCTCCGGGACCTCCAGGCCCAGGT
CCTGCACAATCACCATGCCCGCACGTACACAAAGGAGTCAATTGGGCTGAGCTTCAAGCT
GCTCGAGACAAATCCAGAGGCCTACACGGCATGGAACTACCGGAAGCTTGCGTTGCAGCA
CAATGTCAAGGAGCTTTCTGACCCACAGGCCATCAAGTCTGCTATTGATGATGAGCTGAG
AGTGGCTGAGGTTGCTTTAAGGCAGAACCCAAAGTCCTATGGGGCTTGGTATCACCGGAA
GTGGTTGCTAAACCAAAAGCTAGCGCCTGTGGATTTCAAATATGAGCTTGGCCTCTTGGA
TAAACTGTTAAAGGTGGACGCCAGGAATTTCCATGGATGGAATTACCGAAGGTTCCTTGC
GAGATTCATGGGTTTGCCAGATGATGAGGAGCTTAAGTATACGATGGATAAAATCAGTGA
CAACTTCAGTAATTACTCAGCATGGCATAATCGTAGTATACTTCTGTCCAACCTACTAAT
CCAGCAGAGCAAAGGTTTTGAGTCAAAGCAGAAGATTTTTTCCGAGGAGTTTGAACTTGT
TACTCAAGCTCTTTTTACAGATCCAAGTGACCAAAGTGGATGGTTCTATCACCTCTGGCT
TTTAGCTCAAACATCTAGTCCAGATAACCCACAGCTGATTGCTTCATGGCCTTCTAATGC
TGCAAAGCTCAGTTTCTCTTTTATCAAGGAAAAGGCTGAGCAGCACACACTGTCATCCGT
CTGGTCAAGGACTGTACCCATTGTTCTTTATTTTAATGAGCCTGTCAAAGGATTAAATCA
TTCAAGTGTGAACTTAAAGTCTGATTTGGAGTTCGGTAAGGATATCCAATGGAGGCCCCT
CACAATGGCAGACTCTGGGTACTCTAAATGTTGGGCCACATATCTTCAAATTACAAATGA
ATGTAGCAGTTTGCAGGAATATTCTGTTGAAATGAGCATACCCTGCTCGGATGACATTGT
GTCTAGAAGTGGCTCTAACTACAACTGTCCTGTGCATTTTACATTTTACATTGAACTGAT
CAGCAACAACGCAGCCCAGGGTTTAGATACGTTTGATAAGCCAGTTGCCTGGAATTGCTC
AGACTCATTCCAGTCTCATGGAAACCGTGATCCTATCCCTTTGGATCTGCTAAACATTAC
TAGTGCCTTGGTCGAACATGACTCAGATTGGCATTTTGAAAGGCTGTCTGAGGAGATAGA
TCTTTTCAGAGAGTTAGCTGATGACAATAGCAAGTTTGGGAAGTTGACATTAGCCCGGCT
ATTGCTTGCTTGTGCTGCTATAAAATCCCGTGGAAGATCTCTAATTGAAAGGAAGGGATA
CTGTGAAGAGGCACTGGGGCTCTTCACTGACTTGATTCACCTGGATCCATCTCATAAGCA
GTACTATGAGGATGAACGGAGCTTAGCCCTGATGGATAAGTTAACATGTGACATGGAGAC
TTTCACGAAGCATTGTTCTGTTCAGGTTCAACCAAATTCAGCTCCCCTGCATCATGTGCA
GTTTCGCAGATTGTCTGTAACACGCATCGGATTTGCTGAGCGCCTGTTGTGGGTTCAAAT
GCTGGACCTAAGCCATAATAGTCTTAGATCAGTCGAAGGTTTGGAGGCTTTGCAGCGCCT
TGTGTTCTTGAACATCAGCAACAACCAGATCAGTAGTTTCACAGCACTTGAACCCCTTAC
GAAGATAATCTCACTGAAAGTTCTGGATTTGTCGTTCAACGAGATTGGAGCTCACTCAAT
TGACACAGCACGGTATATCTGCCCGTCTCCGTTCTCACACAAAACTGAAGCAAGTGAAGC
TTTTGAAGAGTACCAGGAGGTAAATAATATCAACGTGACGGAATACTGGGACGCCATATT
GTTCTTCAGATCTTTGAAGCTGGCACAGCTTGATATCAGAGGAAATGCAGTTGCCAGCAA
GGACGGCTTCAGAACTCTTGTCGTGACGCTCATTCCTTGTCTAAAATGGTTTGATGGTGA
AGTTCCACTTAGGAGTTGGGCAATCTTGGTAGTGTCAAGGCTCACTATGTGAACTATTTT
TTGCTAGAAGCCATTGATTTGCTTCATATGCAGTGCTGTATTTGTTTA