Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d036533_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:6:91324993:91328565:1 gene:Zm00001d036533 gene_biotype:protein_coding transcript_biotype:protein_coding description: protein; Ternary complex factor MIP1-like
Sequence

ATGCATCGGTACAGATCGCAGCTAGAGCAGGAAGTTAACAAATTGCAAAGGCAACTCCAA
GAAGAGATTGATTTGCACATGGCGTTGACAGATGCCATTACATATAATGCGGCGCTGATA
CTTAAGGCATCTATGAAGCTTCCTGACAAGGCACACGAGCTATTGATTAGCATATCCTCT
CTGGAAACCGCTATCACAAAGCTTGAAGAGGATCTACATCACCTGCACTACCAGTTATGT
GATGCGAGGAATGAAAGGCTACTTGCAGAAAATAAGCCAGAATGCTTGCTACCTACAGCG
TCAGATTGCCAACCTTCTACAGCTTGCGATTGTACAAGGGAAGAGCCTGAACAAACATTA
AGATATTCGAGATTCAAAGATTATCACCAAGTGGAGGACGGTTTGTCAACTGAACCTGAA
GATCAACAAGATGACGAAAAAGACGCCGAAGATGGAGAACATGTATCTCTAAATATGCTG
ATGCAAGAGGCATGCTCTATGGAAAATGAAGGCAAAGAAGATCAGAAGATAGATGCATTA
ACATTTAGTCAGCCCAATTTCAAGAAAAGCGACATGAGTGGAAATTTGTGGAATAATCCA
AACCAGCTCTCTGAAGAGATGGTGCGCTCGATGAAAGATATCTTCCTTCATTTATCTGCA
TCTCCCAAGATATCACGAGAGGAGCCTTTTGCTAATTCATCTTCATCAGCAGAACGTCTA
TCTGGTTCAACATTGACTACTTTGTCAGATTCATCTATAATCGCCTCAGTGCTGCGGAGT
CCTTCGATTGACTGGAACAACGGCGATGGTATTATTGATGATGTTAGAAACTTTGACCCG
TACAACGTTAAAGGCAAGGAAGCACGGAGAGACGTTGGGAGCTATTGTTCAGTAGCTGAA
GTGTCTTGGATGTATATTGGCAATGAACAACTTGAATATGCATCCGGAGCTCTTAAAAAG
TTCAGGTTTCTTGTGGAGCAACTATCAAAGGTTGACCCTTCTTGTATGAACTGTGATGAA
CAGATAGCATTTTGGGTTAACTTGTACAATGCATTAATAATGCATGCTTATTTGGCATAC
GGTGTCCCTGAAAATGACATTAAGCTGTTCGCGCTAATGCAAAAGGCCTGTTACACGATC
GGCGGGCAGCCTGTCAGTGCAGCCGAAATAGAGTTTGTGATTCTGAAGATGAAGACACCG
GTGCACCGGCCACAGCTCTCCTTGATGCTGGCCCTTCACAAGTTTAAAACGTCAGAGAAC
CTCAGGAGATATTCAATCGATGGCACTGAGCCTCGCGTCCTCTTCGCGCTCTGCTGTGGG
ATGTTCTCTTCTCCTGCGGTAAGGATCTTCTCTGCTGAAAACGTTCGAGCTGAGCTTCAG
GAGTCCATGAGAGACTACATCCGAGCGTCAGTTGGCATAAACGACAAGGGAGAGCTCGTA
GTCCCCAAGCTACTGCAGAGCTACGCCAAGGGCATCGTGGAGGACTCCCTGCTCGCCGAC
TGGATCTGCCGCCATCTGACACTAGACCAAGTCGCCGCGATCCAGGACACGTCGTCGTCG
TCGTCGCATAAGCAGCGGCTTCTTGGAGTGCGCAGCTTCAGCGTCATCCCGTTCGACTCG
AGGTTCCGGTACCTGTTCTTGTCCAACAACACCAGGTGCCAGAATTGA

Peptide Sequence

PEP ID

Zm00001d036533_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:6:91324993:91328565:1 gene:Zm00001d036533 transcript:Zm00001d036533_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description: protein; Ternary complex factor MIP1-like
Sequence

MHRYRSQLEQEVNKLQRQLQEEIDLHMALTDAITYNAALILKASMKLPDKAHELLISISS
LETAITKLEEDLHHLHYQLCDARNERLLAENKPECLLPTASDCQPSTACDCTREEPEQTL
RYSRFKDYHQVEDGLSTEPEDQQDDEKDAEDGEHVSLNMLMQEACSMENEGKEDQKIDAL
TFSQPNFKKSDMSGNLWNNPNQLSEEMVRSMKDIFLHLSASPKISREEPFANSSSSAERL
SGSTLTTLSDSSIIASVLRSPSIDWNNGDGIIDDVRNFDPYNVKGKEARRDVGSYCSVAE
VSWMYIGNEQLEYASGALKKFRFLVEQLSKVDPSCMNCDEQIAFWVNLYNALIMHAYLAY
GVPENDIKLFALMQKACYTIGGQPVSAAEIEFVILKMKTPVHRPQLSLMLALHKFKTSEN
LRRYSIDGTEPRVLFALCCGMFSSPAVRIFSAENVRAELQESMRDYIRASVGINDKGELV
VPKLLQSYAKGIVEDSLLADWICRHLTLDQVAAIQDTSSSSSHKQRLLGVRSFSVIPFDS
RFRYLFLSNNTRCQN

Transcript Sequence

Transcript ID

Zm00001d036533_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:91324993:91328565:1 gene:Zm00001d036533 gene_biotype:protein_coding transcript_biotype:protein_coding description: protein; Ternary complex factor MIP1-like
Sequence

ACTGTATGTACTCGTGGAGTTGTCACTTTCCTGCCTCGGATGTATCGTCCGATGGAAGGA
TGATATCAGCAGCACTGGTAGTGCCAAGAGGGAAGCGGTACAAAGGTGCACCATGCATCG
GTACAGATCGCAGCTAGAGCAGGAAGTTAACAAATTGCAAAGGCAACTCCAAGAAGAGAT
TGATTTGCACATGGCGTTGACAGATGCCATTACATATAATGCGGCGCTGATACTTAAGGC
ATCTATGAAGCTTCCTGACAAGGCACACGAGCTATTGATTAGCATATCCTCTCTGGAAAC
CGCTATCACAAAGCTTGAAGAGGATCTACATCACCTGCACTACCAGTTATGTGATGCGAG
GAATGAAAGGCTACTTGCAGAAAATAAGCCAGAATGCTTGCTACCTACAGCGTCAGATTG
CCAACCTTCTACAGCTTGCGATTGTACAAGGGAAGAGCCTGAACAAACATTAAGATATTC
GAGATTCAAAGATTATCACCAAGTGGAGGACGGTTTGTCAACTGAACCTGAAGATCAACA
AGATGACGAAAAAGACGCCGAAGATGGAGAACATGTATCTCTAAATATGCTGATGCAAGA
GGCATGCTCTATGGAAAATGAAGGCAAAGAAGATCAGAAGATAGATGCATTAACATTTAG
TCAGCCCAATTTCAAGAAAAGCGACATGAGTGGAAATTTGTGGAATAATCCAAACCAGCT
CTCTGAAGAGATGGTGCGCTCGATGAAAGATATCTTCCTTCATTTATCTGCATCTCCCAA
GATATCACGAGAGGAGCCTTTTGCTAATTCATCTTCATCAGCAGAACGTCTATCTGGTTC
AACATTGACTACTTTGTCAGATTCATCTATAATCGCCTCAGTGCTGCGGAGTCCTTCGAT
TGACTGGAACAACGGCGATGGTATTATTGATGATGTTAGAAACTTTGACCCGTACAACGT
TAAAGGCAAGGAAGCACGGAGAGACGTTGGGAGCTATTGTTCAGTAGCTGAAGTGTCTTG
GATGTATATTGGCAATGAACAACTTGAATATGCATCCGGAGCTCTTAAAAAGTTCAGGTT
TCTTGTGGAGCAACTATCAAAGGTTGACCCTTCTTGTATGAACTGTGATGAACAGATAGC
ATTTTGGGTTAACTTGTACAATGCATTAATAATGCATGCTTATTTGGCATACGGTGTCCC
TGAAAATGACATTAAGCTGTTCGCGCTAATGCAAAAGGCCTGTTACACGATCGGCGGGCA
GCCTGTCAGTGCAGCCGAAATAGAGTTTGTGATTCTGAAGATGAAGACACCGGTGCACCG
GCCACAGCTCTCCTTGATGCTGGCCCTTCACAAGTTTAAAACGTCAGAGAACCTCAGGAG
ATATTCAATCGATGGCACTGAGCCTCGCGTCCTCTTCGCGCTCTGCTGTGGGATGTTCTC
TTCTCCTGCGGTAAGGATCTTCTCTGCTGAAAACGTTCGAGCTGAGCTTCAGGAGTCCAT
GAGAGACTACATCCGAGCGTCAGTTGGCATAAACGACAAGGGAGAGCTCGTAGTCCCCAA
GCTACTGCAGAGCTACGCCAAGGGCATCGTGGAGGACTCCCTGCTCGCCGACTGGATCTG
CCGCCATCTGACACTAGACCAAGTCGCCGCGATCCAGGACACGTCGTCGTCGTCGTCGCA
TAAGCAGCGGCTTCTTGGAGTGCGCAGCTTCAGCGTCATCCCGTTCGACTCGAGGTTCCG
GTACCTGTTCTTGTCCAACAACACCAGGTGCCAGAATTGAAACAAGAGTACAAGACTGCA
TTGCTATGCGCAGACAGCCACAGGAGTGGGTGCTTGACAAGTTGACACTTTTTTCGAGAG
CTGAAAATATTAGCTTTTGCTGTACATTCTGTAAATTTTTCCGTTGACTAGGATTCTTCT
TTGTACGTAACATTCAGCTAACTTTTTGTACATCAAGCGAACCCAGAATACAAGTGTAGA
TTCGGTGATGGTTCAGTCTCAGGTTAGTGGCTTGATTAC