Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d036507_T085
CDS Infomation

cds chromosome:B73_RefGen_v4:6:90881777:90893671:-1 gene:Zm00001d036507 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase BRE1-like 1
Sequence

ATGTTCCTTCCATCAAGTGGTCCATGGCATGCGAATAACGAGGTTGTTTCTGCTGCTCTC
AAAAAGTTGCCAGAAAATGAACACAGCAGGCAATTGCACAGTGCTACCAATGATGTGTTA
TCCAAGCTTCACGTGGTGATGCGTGCAGTAGATAATCTTCACTTGAAACACATGCAGTTA
GCAGGGAACTATCAAAAACAAAGAGATTCGAGTGCCTGGAACAGAGCTGAACAGAAACGT
CTGAAAGAGGAGTTGACTAGTGTTGTTGCCAAGTTGGAAGAAAGCAAACAAAAACTGGCA
GTACTGAAAGCACAGGGAGACAATAAGCAAGCAACACCGATCCTTGTTCCTATGCTGGGA
AAGAAAACTGCAGAAAAGGTGGGAGATAAACAAACAGAACTGCAAGATCTTGAAGCTACC
CACAAGGAGTTAATGGAATCGATTTCAAAGCGTCTGGAGGAAATTAGAAGACTGCATACA
GAGAGAATTGGAATTTTGAACAATTTAGCGACTTTTCAGAATATACTGACGGATTTCAAA
AGCATTCACTCTTCCAAAGCTTTTCAACTTGTCAATGACCAACTTCAGAAGTCACAAGCA
GAACTGGATGGTCACCAAACATTGTTAGAGAAATTACAGGTTGACATGGATACCTTTGTT
TGGAGAGAAAGGCAATTTAATCAAAAAGTTGATTTGGCTGAAATCTCCCAGAAGGTTTCT
GCATACTATGTATCTAGAATTGCTGATCTTGAAAAGGATGTCCAGAAACTATGTAATGAA
AAGAATATGCTTGTGCTGAAACTTGAAGGGGCTTTGAGAGAACCTGGTCGGAATCAGGTT
ATCTCAGAATTTAAAGCTCTGGTGTCATCGCTACCGAGGGAAATGGGTGCTGTGCAAACT
GAACTGTCCAAACACAAGGATGCTTCCTTACAGTTGCATTCTTTGCGAGCAGAAGTTCAT
TCACTTTCTAGTATCCGAACCAGAAAGGAACAAGAAATTGAAGAAACATCAAGATCTGCT
CATGCTGGATCTGATATAAGCCAACTTCAATCTCTGGTCCATGAGCTGAGGGAAAATACA
CAGGAGCTTAAACTATTTGTGGAGTTGTATAAGCATGACTCCGCTGATTCCAGACAGCTG
ATGGAATCGAGAGACAGGGAACTTGCTGAATTGGCTGGAGTCCATGTTCTCAGATATTCT
CTTAATGAAAGTAAATTAGAGCAGCGTGTAATTGCAGCCAATGAAGCTGAAGCAATCTCT
CAGCAGAGACTGGCAACTGCCGAAGCTGAGGTTGCTGAATTAGGGCAGAAGCTAGAAACT
TCTAGGAGAAATCTAGTGAAACAATCTGATATACTGAAGTCTAAACATGAAGAATGTGAA
GCGTACATGGTGGAGATCGAGAGCATTGGCCATGCCTATGAAGACATAATGTCACAAAAT
CAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGCTTTTCATGGAG
GGTGTTAAAGCAAAACAGTCACACGATGCTTTGCATTTGGAAGTGTGCTCGTTGCAAAGA
AATTTGCAGCATGCAAGCACTTTGATGGATCTGTGCAACCAGAAACTTATCCACCTGGAG
GACAAGCTAAGAGGTTGGTCAGAGCGGTTGAGGAGACTGTCAGAGGATGGAATGCAGCAA
TCTATTTCATTGGGCATTTCTCAAACAAAGCTTACCGGTATGCATGGGGAAGCTCCAAAG
CTCGGGCAGGCATTGAATGTTCTACAAGCGAAGGTTGGGAGCAATCGGCTGGAAGTTGCT
GAGCTGCTTATAGAACTAGAGACGGAGAGGTTTAGTAAAAAGAGATTAGACGATGATTTG
GATCTAATGTCAAGCAAAGCTAGTTCTCTAAGAGAGAAGGCGGATAATTCTCAAGTCCTT
CAAAAACTTCTCCATGAGGCTAAGGAGTACAGGGGAATACTGAAGTGTGGTATTTGTCAT
GACAGGCAGAAAGAGGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAACCAGTGCATA
CAGAAGTCGCTTGGTAGCCGTCAGAAGAGGTGCCCGTCTTGTGGACTAAGCTTCGGTGTT
AACGATGTGAAACCTATCTATATATGA

Peptide Sequence

PEP ID

Zm00001d036507_P085
PEP Infomation

pep chromosome:B73_RefGen_v4:6:90881777:90893671:-1 gene:Zm00001d036507 transcript:Zm00001d036507_T085 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase BRE1-like 1
Sequence

MFLPSSGPWHANNEVVSAALKKLPENEHSRQLHSATNDVLSKLHVVMRAVDNLHLKHMQL
AGNYQKQRDSSAWNRAEQKRLKEELTSVVAKLEESKQKLAVLKAQGDNKQATPILVPMLG
KKTAEKVGDKQTELQDLEATHKELMESISKRLEEIRRLHTERIGILNNLATFQNILTDFK
SIHSSKAFQLVNDQLQKSQAELDGHQTLLEKLQVDMDTFVWRERQFNQKVDLAEISQKVS
AYYVSRIADLEKDVQKLCNEKNMLVLKLEGALREPGRNQVISEFKALVSSLPREMGAVQT
ELSKHKDASLQLHSLRAEVHSLSSIRTRKEQEIEETSRSAHAGSDISQLQSLVHELRENT
QELKLFVELYKHDSADSRQLMESRDRELAELAGVHVLRYSLNESKLEQRVIAANEAEAIS
QQRLATAEAEVAELGQKLETSRRNLVKQSDILKSKHEECEAYMVEIESIGHAYEDIMSQN
QQLLQQIIERDDHNTKLFMEGVKAKQSHDALHLEVCSLQRNLQHASTLMDLCNQKLIHLE
DKLRGWSERLRRLSEDGMQQSISLGISQTKLTGMHGEAPKLGQALNVLQAKVGSNRLEVA
ELLIELETERFSKKRLDDDLDLMSSKASSLREKADNSQVLQKLLHEAKEYRGILKCGICH
DRQKEVVIAKCYHLFCNQCIQKSLGSRQKRCPSCGLSFGVNDVKPIYI

Transcript Sequence

Transcript ID

Zm00001d036507_T085
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:90881777:90893671:-1 gene:Zm00001d036507 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase BRE1-like 1
Sequence

CCAGCAGCACCGGAGGAATTTGCCCTCCTGGTGTTCACAGCTGTTCGCTGTTGCTCTCTC
CAGTAGTCCCGTTGAGTGACCTCCCCTGCGCGACAACTAGGGCGACCGCCGCCGCCCCAC
GCCTGCTGGCCAGGTCTTCGGCGGACCCTTTGCCGTCGACGGGCATCCACCACACCAGGG
TTTTGCACATTAATGAAGACTTAAAAGTTCCAGAACAAAGCACTAAGGGTGCTCGAAGGA
AAAATGCTTTAGGTTAGGTATATTTTTTATCCCTTCCCTAGACCTCACTCATGTGGGAGC
CTCCGGTATTTGGTCTGCCCTTTTTTATAATTGTTACTGTTAATAATGTATGCTAATCAT
GCCAATTAATTAATATCGTATATTTAATCCAAATTATGTGACAGATCAAACCATGGTTTT
TAAAGCGGTAAGGCGGTCCAAGGCGTTGGAGCACCGCCTGGACGCCTAGGCGAGGTAGGT
GGGCAAGGCGCCTAGGCGTTAGACCACCGCCCAGACGCCTAGGCGACGCCTTAAGAACAG
TGGATCAAACTGTAGATCTTGCCACTGCCTCCAAGCATCCTATGGCCACATGGTTTAGAC
AGTGTTATCCAGGTGGATGACGAATTGTGATGCGGAGGGCCTACTCAATCACCACCACCG
CACAAATAGGGGCATGCGGCATACCACCATTTTAAGATAGATAAATTACATAATACATGT
GCATCTTATCAATCCTTTGAACTTACTATAAGCTCATGTACCTTTCAAGGTCTAAGCCAA
ATAAGTGCTCTTAACACTCTACATCACCATGCACAGGCACTGGTTGAAAACAGATTTTGT
TGGCGCTCCTGGAGTTCATACTTATGTACTTTCCTTTCTCAAATCATAACATATCTTAGG
CAGTTAAAGCTTAGCTGAATGCCAACTTGCCTCCACGTGCAAGATCCCAGAAACATTGCT
ATGTCTCGTCCGGTAAGTACAAATAAAGATATATTTTCTGTGGTTTGTGAGGTTTTACTA
GTAATAGTTTTCTGAAAATGAAACAGATGTATACTGTACAGTCTTCTGCACCCTGTCTTT
CTATGCTTTCTGCTTGTTTAGTTGCTGCATCTTTATTGACTCCCTGCTGCAACGAAAAGT
GAAACTATGTGTTCCATGTTATTACATTTACTTCTAAAGAATAGTTACCTTATGATAAAT
TTGTAAAAAAAATACATCAGATATTATCTTGTGCAGCCTGGTGCTTGAGAGGTTATTATG
TGATGTAGGTACTAGGTACCCAAAGTTTCTATAATGGGCTTAAATAAATCCTAATGAGGG
AACCACAATGAGTTTCCATTGTTGTATTGTACCTGATTAAAAAAGCTATAAGATGGAATA
CTTAACAAAATCATGGAGCAATGAATTAGCACTAGCAATATAGGCATACTATTGTAATCT
CTACCCAACTTTTCTGTCTTGTAAAACAAAATAATCAGGCAGGCAATCATTTTCATAGGC
TGATATTTGATTACATCATGATTATGATGAAATAAACTTTTCTTTTTACTGAGCGACTTT
CGAAATTATCTTACTCCTTTGATGTATGAAGACTGAAGAGCCATTAATAAACCAATAATA
TAACTATTGGACGATTCAGCTTATGATCATAATATTAAGAAATGTATAATCTATCCGCAA
AAAGTTATTTCACGCTGCAAGCATTGAAGAAGTCATCAGGGAACTCTTTTTCTTATCTAC
GTTTAAGAATGGTCTTTTATTTGGATATATTGCAAGCTGCAAATTACAATGCACAAAACC
TATAGCACATGAAAAGAGCTGTTGCACGTCTATCTATGATGCAGCTATGTACCAACCAAA
ATTTACTCAAGTATGTTTAGCTGTTGAAGTTACATTACATGATATGTTAACATTCCAACT
AAAACAGTACTGTGATTTCACTCTCATTAGGTGATTAGCATTGTGCACATTTACATATGT
TCAAAAGTGATTTAATTTTGTCTAATACTACCTCCGTTCTTAAATATTTGTCGCCCGCTA
GTTCATTTTTGAACTAAAACACGACAAATAAAAAAGAACGGAGGGAGTATTTTGTATTTT
CATTTTAAGAAAACATATTGCATATGCGACAAAAATGGTATTAATTAATTGAAGGTACTT
GTAGCATCTTTGCATTTCTTGAGGTTCGAAAATTAAAGGTGCTCTGTGTTGGTCTATTAT
ATTTTTTTTGTACAATGCTTGTTTTTAGTTTATAGTTGTGTTGCACTAGCATCTTATGTT
TTCCTTTCTGGCAGCTTGATTTTGCTGTGCTTAATTACAAAAATCAAAGGCTTGCGGAAC
AACTGGAAGTCCACAAATTTGAGTTCCGTGCTCTTGAGAGTAGATTTAATGATTTAAAAG
AGAAACAGAGGACACATAATGAGACACTTATCCTAGTAGAAAATTATTGGGAGCGACTCG
TAGCAGAGCTGGGTATAGTCCCTGTTTGCAAAAGTGAATCTTCACATTCAAGCTGCAGTA
CAGGAAACAACAATATACGGAAGGATGGTATATGCTTTCGCCTAGGAGCAGGCTTTTTAA
ATGGACTTTTAGAGGCTGGTGCCAGTGCCACAGAAAGTTCAGGTTTTTCCAATTGTCAAC
TAGGAAATGACGTCTCTTCAGAAGAATCAACAACAATTGATATTCTGCAGAAGATGTTCC
TTCCATCAAGTGGTCCATGGCATGCGAATAACGAGGTTGTTTCTGCTGCTCTCAAAAAGT
TGCCAGAAAATGAACACAGCAGGCAATTGCACAGTGCTACCAATGATGTGTTATCCAAGC
TTCACGTGGTGATGCGTGCAGTAGATAATCTTCACTTGAAACACATGCAGTTAGCAGGGA
ACTATCAAAAACAAAGAGATTCGAGTGCCTGGAACAGAGCTGAACAGAAACGTCTGAAAG
AGGAGTTGACTAGTGTTGTTGCCAAGTTGGAAGAAAGCAAACAAAAACTGGCAGTACTGA
AAGCACAGGGAGACAATAAGCAAGCAACACCGATCCTTGTTCCTATGCTGGGAAAGAAAA
CTGCAGAAAAGGTGGGAGATAAACAAACAGAACTGCAAGATCTTGAAGCTACCCACAAGG
AGTTAATGGAATCGATTTCAAAGCGTCTGGAGGAAATTAGAAGACTGCATACAGAGAGAA
TTGGAATTTTGAACAATTTAGCGACTTTTCAGAATATACTGACGGATTTCAAAAGCATTC
ACTCTTCCAAAGCTTTTCAACTTGTCAATGACCAACTTCAGAAGTCACAAGCAGAACTGG
ATGGTCACCAAACATTGTTAGAGAAATTACAGGTTGACATGGATACCTTTGTTTGGAGAG
AAAGGCAATTTAATCAAAAAGTTGATTTGGCTGAAATCTCCCAGAAGGTTTCTGCATACT
ATGTATCTAGAATTGCTGATCTTGAAAAGGATGTCCAGAAACTATGTAATGAAAAGAATA
TGCTTGTGCTGAAACTTGAAGGGGCTTTGAGAGAACCTGGTCGGAATCAGGTTATCTCAG
AATTTAAAGCTCTGGTGTCATCGCTACCGAGGGAAATGGGTGCTGTGCAAACTGAACTGT
CCAAACACAAGGATGCTTCCTTACAGTTGCATTCTTTGCGAGCAGAAGTTCATTCACTTT
CTAGTATCCGAACCAGAAAGGAACAAGAAATTGAAGAAACATCAAGATCTGCTCATGCTG
GATCTGATATAAGCCAACTTCAATCTCTGGTCCATGAGCTGAGGGAAAATACACAGGAGC
TTAAACTATTTGTGGAGTTGTATAAGCATGACTCCGCTGATTCCAGACAGCTGATGGAAT
CGAGAGACAGGGAACTTGCTGAATTGGCTGGAGTCCATGTTCTCAGATATTCTCTTAATG
AAAGTAAATTAGAGCAGCGTGTAATTGCAGCCAATGAAGCTGAAGCAATCTCTCAGCAGA
GACTGGCAACTGCCGAAGCTGAGGTTGCTGAATTAGGGCAGAAGCTAGAAACTTCTAGGA
GAAATCTAGTGAAACAATCTGATATACTGAAGTCTAAACATGAAGAATGTGAAGCGTACA
TGGTGGAGATCGAGAGCATTGGCCATGCCTATGAAGACATAATGTCACAAAATCAACAAT
TGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGCTTTTCATGGAGGGTGTTA
AAGCAAAACAGTCACACGATGCTTTGCATTTGGAAGTGTGCTCGTTGCAAAGAAATTTGC
AGCATGCAAGCACTTTGATGGATCTGTGCAACCAGAAACTTATCCACCTGGAGGACAAGC
TAAGAGGTTGGTCAGAGCGGTTGAGGAGACTGTCAGAGGATGGAATGCAGCAATCTATTT
CATTGGGCATTTCTCAAACAAAGCTTACCGGTATGCATGGGGAAGCTCCAAAGCTCGGGC
AGGCATTGAATGTTCTACAAGCGAAGGTTGGGAGCAATCGGCTGGAAGTTGCTGAGCTGC
TTATAGAACTAGAGACGGAGAGGTTTAGTAAAAAGAGATTAGACGATGATTTGGATCTAA
TGTCAAGCAAAGCTAGTTCTCTAAGAGAGAAGGCGGATAATTCTCAAGTCCTTCAAAAAC
TTCTCCATGAGGCTAAGGAGTACAGGGGAATACTGAAGTGTGGTATTTGTCATGACAGGC
AGAAAGAGGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAACCAGTGCATACAGAAGT
CGCTTGGTAGCCGTCAGAAGAGGTGCCCGTCTTGTGGACTAAGCTTCGGTGTTAACGATG
TGAAACCTATCTATATATGAAACAGAAGGTTGGCGCCTGTGTCGCACACACCAGAACTGC
CTGGTGCTCTACTGATTCCCGGTATATGGTAGGCCGCCATGGCGGCGGTTCAGTTGGTGA
TGTAGCATAAGCTTCTCTAGGTACATTGCACACCCCCCAAAAAAAAAGTAAGACGCTGCA
TGTGATTGCTGGTACCCGCTGGCATATATGATGCTGGTGTTACCTCAAGCGTCTCTCGCA
AAGTATGCCTTGCCTTTGCCCAGTCTGGTAGAATAGCCTGACCTCTTCAACCATTGCTTA
TTTTTTATTCATTGGGAGAAAAAGACC