Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d036489_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:90385335:90387649:1 gene:Zm00001d036489 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGGCTTCCTCCCTGGCCGCCCTCCACTCAGCCGCCGCCAGCCACCTCCCACACCCTCGA
CGTCAGAGGACCGCCGCCCTCGCGCGCGCCTCTCCTCTCCTCCGCCTGCCGCTTCGCCTC
CGCTCCCGCCGGGTCCCCGGGTCGCCGCCAAGAACCTCGCAGTTGGCGACCGGCGCCGCT
GGCGGCACGGCAACCGGCAGGGCGAGGCGGAGCGTAGGCGTCGACGTCGCCGCCCTCGCC
GCGGCGCTGCGCGACGCCAGAACGGCCGACGACGTGGAGTCCTCGGTGAACGCCTTCTTG
AGCGACGACGAGGCCCGGCTCCTGCCGCTCCAGGTGTACACGTGCGTGATCCGGGGGCTC
GGCAAGGGCAACAGCCCGGACGCCGCGTTCGCCGTCGTCGAGCACCTCAAGCGGAGAGGG
GTGGTGCCGAACCAGTTCGTGTACAACTGCCTCCTCGGCGCCGTCAAGAGCTGCGGCGAG
CTCGGCCGGGTCCAGGCCGTCCTCGACGACATGGAGGCGCAGGGGGTGCCCCCGAACATC
GTCACCTTCAACACGCTGATGTCGATCCACGTCCAGCAGGGCAGGGTGGAGGACGCCCTC
AGGGTGTACGCCGACGTCCAGGGGCGCGGGCTCGTGCCGACCGCCGCGACCTACTCCACG
GTGATGTCCGCCTACAAGAAGGCGGGGGACGCGTCCGCGGCTATCCAGCTCTTCGCCCTG
CTCAGGGAGAGGTACAGGAACGGGGAGCTGGTGGGGAGCCGTGGTGACCCGGAGCAGGAG
CTCGTCAAGCTCGAGAAGCTGACCGTCCGGGCGTGCTACCTGTCGATGCGGCGGTCGCTC
GTCGGGGGGAAGAATCCGGTCGGCGAGGCGCTGAAGGTCCTCCTGGACATGGACGAAGCA
GGTGTCCGGCCGGAGCGGAGCGACTACGAGCGGCTCGTCTGGGCGTGCACCCGGGACGAG
CACTACGCCATCGGCAAGGAGCTGTACCAGAGGATTCGCGACGGTGGCGACGAGATCAGC
CTGTCCGTCTGTAACCACCTGATCTGGCTAATGGGCAAGGCGAAGAAATGGTGGGCGGCT
CTCGAGATCTACGAGGACCTGCTGGACAAAGGGCCGAAGCCGAACAACCTGTCCCACGAG
CTGATCATGTCGCACTTCAACGTCCTCCTGGACGCCGCCAAGCGAAGGGGCATCTGGAGG
TGGGGCGTCAGGCTGCTGGACAAGATGCAGGAGAAGGGCCTGAAGCCCGGAGGCAAGGAG
TGGAACGCGGTCCTCCTCGCGTGCTCAAGGGCCTCCGAGACGTCTGCGGCTGTGGACGTC
TTCAAGAAGATGGTGGAGCGAGGGCTGAAGCCGGACGTGGTCTCCTACGGAGCGTTGCTG
AGCGCGCTCGAGAAAGGCAGGCTCTACGACGAGGCACTGAGGGTCTGGGAACACATGCGC
AGGCTCGGCATCGAACCCAACCTCTACGCGTACACGATCCTGGCGTCGATCTACATCGGC
AAGGGCGACCACGCCATGGCGGACGCTGTTCTTCACGACATGCTGTCGAAGCGGATCGCG
CCGACCGTCGTCACCTTCAACGCGATAATCAGCGCGTGCGCGAGGAGCGGTTCGGGTGGG
AACGCCTTCGAGTGGTTCCACAGGATGAAGATGAAGGGCATTGAGCCGAATGAGATCACG
TACCAGGTGTTGATTGAGGCTCTTGTGCAGGATGGGAAGCCAAGACTTGCCTATGAGATG
TACATGAAGGCTTGCGGCCAGGGTCTTCAGCTTCCTGCAAAGTCGTATGACACCGTGCTG
GAGGCGTGTAGGGCTTATGGTTCCGTAGTAGATGTAGCTACTCTGGGTCCTCGACCTTCG
AAAGGGGTGGAAGTGGAACCCATCAGGATAGAGAATAGCTTCTCCCGTTTCTCTCAGTTC
AAGGATGTGCATGGCAGCTCTCATCGTTTTGCAGGCGTTGGAATGTATGGGTTTTACGGA
TACAGAATGGCAAGGTAA

Peptide Sequence

PEP ID

Zm00001d036489_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:90385335:90387649:1 gene:Zm00001d036489 transcript:Zm00001d036489_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MASSLAALHSAAASHLPHPRRQRTAALARASPLLRLPLRLRSRRVPGSPPRTSQLATGAA
GGTATGRARRSVGVDVAALAAALRDARTADDVESSVNAFLSDDEARLLPLQVYTCVIRGL
GKGNSPDAAFAVVEHLKRRGVVPNQFVYNCLLGAVKSCGELGRVQAVLDDMEAQGVPPNI
VTFNTLMSIHVQQGRVEDALRVYADVQGRGLVPTAATYSTVMSAYKKAGDASAAIQLFAL
LRERYRNGELVGSRGDPEQELVKLEKLTVRACYLSMRRSLVGGKNPVGEALKVLLDMDEA
GVRPERSDYERLVWACTRDEHYAIGKELYQRIRDGGDEISLSVCNHLIWLMGKAKKWWAA
LEIYEDLLDKGPKPNNLSHELIMSHFNVLLDAAKRRGIWRWGVRLLDKMQEKGLKPGGKE
WNAVLLACSRASETSAAVDVFKKMVERGLKPDVVSYGALLSALEKGRLYDEALRVWEHMR
RLGIEPNLYAYTILASIYIGKGDHAMADAVLHDMLSKRIAPTVVTFNAIISACARSGSGG
NAFEWFHRMKMKGIEPNEITYQVLIEALVQDGKPRLAYEMYMKACGQGLQLPAKSYDTVL
EACRAYGSVVDVATLGPRPSKGVEVEPIRIENSFSRFSQFKDVHGSSHRFAGVGMYGFYG
YRMAR

Transcript Sequence

Transcript ID

Zm00001d036489_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:90385335:90387649:1 gene:Zm00001d036489 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

CACCAGCGCCTGGACGCTCGCGCCCCGGCCTCGCCGCCATGGCTTCCTCCCTGGCCGCCC
TCCACTCAGCCGCCGCCAGCCACCTCCCACACCCTCGACGTCAGAGGACCGCCGCCCTCG
CGCGCGCCTCTCCTCTCCTCCGCCTGCCGCTTCGCCTCCGCTCCCGCCGGGTCCCCGGGT
CGCCGCCAAGAACCTCGCAGTTGGCGACCGGCGCCGCTGGCGGCACGGCAACCGGCAGGG
CGAGGCGGAGCGTAGGCGTCGACGTCGCCGCCCTCGCCGCGGCGCTGCGCGACGCCAGAA
CGGCCGACGACGTGGAGTCCTCGGTGAACGCCTTCTTGAGCGACGACGAGGCCCGGCTCC
TGCCGCTCCAGGTGTACACGTGCGTGATCCGGGGGCTCGGCAAGGGCAACAGCCCGGACG
CCGCGTTCGCCGTCGTCGAGCACCTCAAGCGGAGAGGGGTGGTGCCGAACCAGTTCGTGT
ACAACTGCCTCCTCGGCGCCGTCAAGAGCTGCGGCGAGCTCGGCCGGGTCCAGGCCGTCC
TCGACGACATGGAGGCGCAGGGGGTGCCCCCGAACATCGTCACCTTCAACACGCTGATGT
CGATCCACGTCCAGCAGGGCAGGGTGGAGGACGCCCTCAGGGTGTACGCCGACGTCCAGG
GGCGCGGGCTCGTGCCGACCGCCGCGACCTACTCCACGGTGATGTCCGCCTACAAGAAGG
CGGGGGACGCGTCCGCGGCTATCCAGCTCTTCGCCCTGCTCAGGGAGAGGTACAGGAACG
GGGAGCTGGTGGGGAGCCGTGGTGACCCGGAGCAGGAGCTCGTCAAGCTCGAGAAGCTGA
CCGTCCGGGCGTGCTACCTGTCGATGCGGCGGTCGCTCGTCGGGGGGAAGAATCCGGTCG
GCGAGGCGCTGAAGGTCCTCCTGGACATGGACGAAGCAGGTGTCCGGCCGGAGCGGAGCG
ACTACGAGCGGCTCGTCTGGGCGTGCACCCGGGACGAGCACTACGCCATCGGCAAGGAGC
TGTACCAGAGGATTCGCGACGGTGGCGACGAGATCAGCCTGTCCGTCTGTAACCACCTGA
TCTGGCTAATGGGCAAGGCGAAGAAATGGTGGGCGGCTCTCGAGATCTACGAGGACCTGC
TGGACAAAGGGCCGAAGCCGAACAACCTGTCCCACGAGCTGATCATGTCGCACTTCAACG
TCCTCCTGGACGCCGCCAAGCGAAGGGGCATCTGGAGGTGGGGCGTCAGGCTGCTGGACA
AGATGCAGGAGAAGGGCCTGAAGCCCGGAGGCAAGGAGTGGAACGCGGTCCTCCTCGCGT
GCTCAAGGGCCTCCGAGACGTCTGCGGCTGTGGACGTCTTCAAGAAGATGGTGGAGCGAG
GGCTGAAGCCGGACGTGGTCTCCTACGGAGCGTTGCTGAGCGCGCTCGAGAAAGGCAGGC
TCTACGACGAGGCACTGAGGGTCTGGGAACACATGCGCAGGCTCGGCATCGAACCCAACC
TCTACGCGTACACGATCCTGGCGTCGATCTACATCGGCAAGGGCGACCACGCCATGGCGG
ACGCTGTTCTTCACGACATGCTGTCGAAGCGGATCGCGCCGACCGTCGTCACCTTCAACG
CGATAATCAGCGCGTGCGCGAGGAGCGGTTCGGGTGGGAACGCCTTCGAGTGGTTCCACA
GGATGAAGATGAAGGGCATTGAGCCGAATGAGATCACGTACCAGGTGTTGATTGAGGCTC
TTGTGCAGGATGGGAAGCCAAGACTTGCCTATGAGATGTACATGAAGGCTTGCGGCCAGG
GTCTTCAGCTTCCTGCAAAGTCGTATGACACCGTGCTGGAGGCGTGTAGGGCTTATGGTT
CCGTAGTAGATGTAGCTACTCTGGGTCCTCGACCTTCGAAAGGGGTGGAAGTGGAACCCA
TCAGGATAGAGAATAGCTTCTCCCGTTTCTCTCAGTTCAAGGATGTGCATGGCAGCTCTC
ATCGTTTTGCAGGCGTTGGAATGTATGGGTTTTACGGATACAGAATGGCAAGGTAAACAA
ACCAAGCATGTAACCTACTATCAATCCCCCTCTCCCTCTTGTAATCACCCTCCCAAACCC
AATGCCACATTTTTAAAACATTTGACTCGTGTATTTGTAAGCTCACTAAGTTGCGAAAAA
AAAATACTAGTGCACTGCCCTTTATGTTAGTGTGGACCAAAAAA