Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035990_T020
CDS Infomation

cds chromosome:B73_RefGen_v4:6:64976275:64984846:-1 gene:Zm00001d035990 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable transcriptional regulator SLK2
Sequence

ATGTTACAGCCAAGTACTAGCATGAATGGTGATTCATTGATGCGTGTTCCTGCATCACCA
ATGTCATTTTCATCCAATAACATCTCTGGCTCTTCAGTCATTGATGGTTCCATCATGCAG
CAAAGTCCACCCCAAGAACAGATGCAGAAAAGGAGGTCTTCAAGTGTAACATCACAACAT
GTGATCGATGCTGGTGGTGCATTGCATGCTCAGAAGAAATCAAGGACTGATGTTAGTCAG
GGTGATATCATGCAACATCAGCTGATTCAGCATCTGATCCATGGTCAGAATTCTCTTCAT
TTCCAGGGGCAACAGAACCCACAGCTTCAAGCTTTTATCCAGCAGCATAAACTAGCACAA
CTTCAGCAACGGCAGCAGCAGCATTTGTTGCAACCATTTTCTCAGATGCAACAACCCCAA
GTTGGTATTCCTCGGCAGCCGCAACTTAGGCCGCCATTGGCACAGACTGGAATGCAGTTA
GGTGGTCCTGTTAGGACTCCTATCGAGAGGGGTGTTTGTTCTCGCAGGATACTGCAGTAT
CTATTTCACAAGCGTCATCGCCCAGAGAATAACTCTATAACATACTGGAGGAAGATTGTT
GAAGAGTACTTTGCACCTCGAGCAAGAGAAAGGTGGTGTGTCTCTTCTTATGAAAACAGA
GGGAATTCTTCAGCTGCTGCTCCACAGAAAGCTCTGGATACATGGCGATGTGGCATTTGC
AATACACATGCTGGGAAAGGATATGAAGCTACCTATGAAATACTTCCTAGGCTCTGCCAA
ATTAGATTTGACCATGGTGTTATTGATGAATACTTATACTTTGACTCACCCAACGAATTT
GGGTTGCCTAATGGACAAATGGTGCTGGAGCATGCAAAAGTTGTTCAAAAAAGTGTTTAT
GAACATCTACATGTTATACACGAGGGACATCTGAGAATCATTTTCACACCAGAACTGAAG
ATAATATCGTGGGAATTTTGTTCAAGACGTCATGAGGAATACACCACTCGTAAGACTATA
GCACCACAGGTTAATAATCTTCTGCAAGTTGTCCAGAAATACCAAGCTGTTGTCACTGAA
AGTGGATCAGCCGGGATATCAAATAATGATGCACAAACCATCTGCAACATGTTTGTCACT
GCATCACAACAACTGGCAAAAAATCTAGAGCATCACACCTTAAATGAACATGGGCTCTCT
AAAAGATATGTACGCTCCCTGCAGATATCGGAGGTGGTGAATCACATGAAGGACTTGATT
GAGTTCAGCCACAAGAACGGCCTTGGTCCTAAAGAGAGCCTGAACAGCTATTCTAAAACC
ATGGCGAAGTTTCAGAATATGCATGATTCAAGACAGCTCATGGCTGCTGCTAACCTTGCC
AATAACCAGAGCAACACCAAACTAATGGGGACCAAAGAAGAAGCAAGTGCTTCTGCGACC
AACCAGACTCCTGGTGTCGGAGCCATCGGCAATAATGCTCTTCAGCATGCCACACCTCTA
AACAGCTACCAGAATATGCTCAGAAGCTCCAGTGCAAATCCAGTCTTGCTGCAGCAGGAG
GCATCGAGTGTCTTCAAAGGTCCTACAGCAATGCACAGTGGCATACAGCTGGAAGCAGCC
AGATCCTTCCGTGGACCTAACCAAGTGCAGTTCCAACACCCTGCGGCGATTCAGCAGCAG
CAGCCTATGCCGCAGCAGAGCAATTTCCAGGGCTTTGGTGGTGTTAACCCACAGTACCAG
CACCATGTGCTTAATCAGCTTCTGCAGGAAGTTAAGAACAATAACCACGTGAAAGCACAG
CAACTGCCTCCAGATGCACCTAAAGCGAGCGGCGGTCTTGCACCAGGAGTTGCTATTCCC
AACGTTGCTGCTGCTGGGGAGCAGGGACAGCATATCAACAGTAATACCCGTGACCATAAC
GGCGCGGTGAAGGGTGCTGCTCCAGCTGGTACTGGCCCAAGCAATGTGATCAACAACACA
GCCAGCATGCCCCCCGGCAGAAACAACAGCTTCAAGTCGGTGAGCAGCAGTCCAGCTGCT
GCTACCGGTGGCATTGCGGTGAACTCGAAGGTCGACGACTCCTTCCATCAACTGGAGGAC
CTCGACCTCGACGGCTTGATCACAAACGAACTGATGGAGAGCGGGTTGTTCGGCGCCGGA
CAAGGGTGG

Peptide Sequence

PEP ID

Zm00001d035990_P020
PEP Infomation

pep chromosome:B73_RefGen_v4:6:64976275:64984846:-1 gene:Zm00001d035990 transcript:Zm00001d035990_T020 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable transcriptional regulator SLK2
Sequence

MLQPSTSMNGDSLMRVPASPMSFSSNNISGSSVIDGSIMQQSPPQEQMQKRRSSSVTSQH
VIDAGGALHAQKKSRTDVSQGDIMQHQLIQHLIHGQNSLHFQGQQNPQLQAFIQQHKLAQ
LQQRQQQHLLQPFSQMQQPQVGIPRQPQLRPPLAQTGMQLGGPVRTPIERGVCSRRILQY
LFHKRHRPENNSITYWRKIVEEYFAPRARERWCVSSYENRGNSSAAAPQKALDTWRCGIC
NTHAGKGYEATYEILPRLCQIRFDHGVIDEYLYFDSPNEFGLPNGQMVLEHAKVVQKSVY
EHLHVIHEGHLRIIFTPELKIISWEFCSRRHEEYTTRKTIAPQVNNLLQVVQKYQAVVTE
SGSAGISNNDAQTICNMFVTASQQLAKNLEHHTLNEHGLSKRYVRSLQISEVVNHMKDLI
EFSHKNGLGPKESLNSYSKTMAKFQNMHDSRQLMAAANLANNQSNTKLMGTKEEASASAT
NQTPGVGAIGNNALQHATPLNSYQNMLRSSSANPVLLQQEASSVFKGPTAMHSGIQLEAA
RSFRGPNQVQFQHPAAIQQQQPMPQQSNFQGFGGVNPQYQHHVLNQLLQEVKNNNHVKAQ
QLPPDAPKASGGLAPGVAIPNVAAAGEQGQHINSNTRDHNGAVKGAAPAGTGPSNVINNT
ASMPPGRNNSFKSVSSSPAAATGGIAVNSKVDDSFHQLEDLDLDGLITNELMESGLFGAG
QGW

Transcript Sequence

Transcript ID

Zm00001d035990_T020
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:64976275:64984846:-1 gene:Zm00001d035990 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable transcriptional regulator SLK2
Sequence

ATCCGACGGCCGAGATTGTCTTCCGCGGGCCCGCGGCGACCGGCAACGAACAGTCAAAGG
CGGGCCGCCCCACCGGCTGCACCCGGTCACCCCAGCCTCGGGCGCCGCGAAGCTATTAGC
CCCGTGGGCGCGGCGGCGGCGGCTCCGGCTGCCACACCAACAGACAGGCAAGGGCTAGGC
AAGGCGCAAGAAGAGGAGGGGAAGTCGAAAATAATTTAGCAGCGGAAGCGGAAGCAGCAG
CACGAGGTGGGTGGGGCAGCGGCAGCGGGGTTCTGGCTAAATTATTTTAATGTCTTTATT
ATCAGAGATTCCAGTAATGTGCCTTGCCTCTTTTATGTGATTGTACAAATCAATGAACGG
AACTCATCCCTGGACCTCCATGTCCGGGGGTGCATGTTCTAACCTTGGATATGCCAGAGA
CATGAATGTTACAGCCAAGTACTAGCATGAATGGTGATTCATTGATGCGTGTTCCTGCAT
CACCAATGTCATTTTCATCCAATAACATCTCTGGCTCTTCAGTCATTGATGGTTCCATCA
TGCAGCAAAGTCCACCCCAAGAACAGATGCAGAAAAGGAGGTCTTCAAGTGTAACATCAC
AACATGTGATCGATGCTGGTGGTGCATTGCATGCTCAGAAGAAATCAAGGACTGATGTTA
GTCAGGGTGATATCATGCAACATCAGCTGATTCAGCATCTGATCCATGGTCAGAATTCTC
TTCATTTCCAGGGGCAACAGAACCCACAGCTTCAAGCTTTTATCCAGCAGCATAAACTAG
CACAACTTCAGCAACGGCAGCAGCAGCATTTGTTGCAACCATTTTCTCAGATGCAACAAC
CCCAAGTTGGTATTCCTCGGCAGCCGCAACTTAGGCCGCCATTGGCACAGACTGGAATGC
AGTTAGGTGGTCCTGTTAGGACTCCTATCGAGAGGGGTGTTTGTTCTCGCAGGATACTGC
AGTATCTATTTCACAAGCGTCATCGCCCAGAGAATAACTCTATAACATACTGGAGGAAGA
TTGTTGAAGAGTACTTTGCACCTCGAGCAAGAGAAAGGTGGTGTGTCTCTTCTTATGAAA
ACAGAGGGAATTCTTCAGCTGCTGCTCCACAGAAAGCTCTGGATACATGGCGATGTGGCA
TTTGCAATACACATGCTGGGAAAGGATATGAAGCTACCTATGAAATACTTCCTAGGCTCT
GCCAAATTAGATTTGACCATGGTGTTATTGATGAATACTTATACTTTGACTCACCCAACG
AATTTGGGTTGCCTAATGGACAAATGGTGCTGGAGCATGCAAAAGTTGTTCAAAAAAGTG
TTTATGAACATCTACATGTTATACACGAGGGACATCTGAGAATCATTTTCACACCAGAAC
TGAAGATAATATCGTGGGAATTTTGTTCAAGACGTCATGAGGAATACACCACTCGTAAGA
CTATAGCACCACAGGTTAATAATCTTCTGCAAGTTGTCCAGAAATACCAAGCTGTTGTCA
CTGAAAGTGGATCAGCCGGGATATCAAATAATGATGCACAAACCATCTGCAACATGTTTG
TCACTGCATCACAACAACTGGCAAAAAATCTAGAGCATCACACCTTAAATGAACATGGGC
TCTCTAAAAGATATGTACGCTCCCTGCAGATATCGGAGGTGGTGAATCACATGAAGGACT
TGATTGAGTTCAGCCACAAGAACGGCCTTGGTCCTAAAGAGAGCCTGAACAGCTATTCTA
AAACCATGGCGAAGTTTCAGAATATGCATGATTCAAGACAGCTCATGGCTGCTGCTAACC
TTGCCAATAACCAGAGCAACACCAAACTAATGGGGACCAAAGAAGAAGCAAGTGCTTCTG
CGACCAACCAGACTCCTGGTGTCGGAGCCATCGGCAATAATGCTCTTCAGCATGCCACAC
CTCTAAACAGCTACCAGAATATGCTCAGAAGCTCCAGTGCAAATCCAGTCTTGCTGCAGC
AGGAGGCATCGAGTGTCTTCAAAGGTCCTACAGCAATGCACAGTGGCATACAGCTGGAAG
CAGCCAGATCCTTCCGTGGACCTAACCAAGTGCAGTTCCAACACCCTGCGGCGATTCAGC
AGCAGCAGCCTATGCCGCAGCAGAGCAATTTCCAGGGCTTTGGTGGTGTTAACCCACAGT
ACCAGCACCATGTGCTTAATCAGCTTCTGCAGGAAGTTAAGAACAATAACCACGTGAAAG
CACAGCAACTGCCTCCAGATGCACCTAAAGCGAGCGGCGGTCTTGCACCAGGAGTTGCTA
TTCCCAACGTTGCTGCTGCTGGGGAGCAGGGACAGCATATCAACAGTAATACCCGTGACC
ATAACGGCGCGGTGAAGGGTGCTGCTCCAGCTGGTACTGGCCCAAGCAATGTGATCAACA
ACACAGCCAGCATGCCCCCCGGCAGAAACAACAGCTTCAAGTCGGTGAGCAGCAGTCCAG
CTGCTGCTACCGGTGGCATTGCGGTGAACTCGAAGGTCGACGACTCCTTCCATCAACTGG
AGGACCTCGACCTCGACGGCTTGATCACAAACGAACTGATGGAGAGCGGGTTGTTCGGCG
CCGGACAAGGGTGGT