Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035960_T028
CDS Infomation

cds chromosome:B73_RefGen_v4:6:62662009:62672739:1 gene:Zm00001d035960 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase III subunit 2
Sequence

ATGGGGATATCAAGGATCGATGAGACTCACATGGAAAAACTGAGGCATGGAACTTGTGGT
TTTGATGATTTCCTGCGTGATGGGTTGATTGAATATCTTGATGTTAATGAAGAAAACAAT
GCACTGATTGCATTGTATGAGCACATGGATCAAGATGATGTTGAAAGAAGCAGCATCACA
CACATTGAAATAGAGCCATTGAGTATCTTAGGGGTTGTATCTGGACTTATTCCATATCCA
CACCATAACCAATCTCCACGTAATACTTACCAGTGTGCAATGGGTAAGCAAGCGATGGGA
AATATTGCATATAATCAGTTGTTCAGAGCAGATTCACTACTGTACTTACTAGTGTATGCA
CAACGGCCACTGCTAACGACGAAAACTATTGAGTTGGTGGGGTATGATAAACTTGGCGCT
GGGCAGAACGCCACTGTTGCTGTCATGGGATATAGTGGTTATGATATTGAAGATGCAATT
GTGATGAACAAGTCATCCCTTGATCGAGGATTTGGCCGTTGCATAGCATTGAAAAAGTAC
ACAGTTTTAAAGGATAACTATGGAGATGGTGTATCCGATATGATTGTTGAACCCCAAAGA
GATAATGGTGTTTTGATTAAACAGAATATGAGAGCGTTGGATGAAGATGGAATTGCCGGA
CCTGGTCAAATTATTCGCAATCATGATATCTATGTAAACAAGCGAACTCCCAAAAACACT
TCAAAAGGTATTGGTAGGGCATTGAGAGAAAGTGACTACAAGGACTCACCTGCCTTGTAC
AAAGGTGTTGATGGTGAGACTACTGTGGTAGATCGTGTAATGCTGTGCTCAGATACAAAT
GATAAGTTATCCATTAAGTGTATTATTCGTCACACTAGAAGGCCAGAGGTTGGTGACAAA
TTCAGTAGCAGACATGGGCAGAAAGGTGTCTGTGGTACGATTGTTCAGCAAGAAGACTTC
CCCTTCTCTGAGAGAGGAATCTGTCCTGATTTAATCATGAATCCACATGGTTTCCCAAGT
CGTATGACAATAGGTAAAATGATTGAACTTCTTGGTGGAAAGGCTGGTGTTTCTTGTGGA
CGGTTTCACTATGGCAGTGCATTTGGTGAGCCAAGTGGTAATGCTGACAAGGTTGCAGAC
ATAAGCTCTACTCTAATCAAGCATGGTTTCAGCTATAATGGAAAAGATTTCTTGTACTCA
GGCATTCTTGGTCAGCCTCTTGAGGCATACATCTTCATGGGACCAATCTACTATCAGAAA
CTAAAGCACATGGTTCTTGATAAGATGCATGCTCGAGCTAGTGGACCGCGGGTGTTACTG
ACGAGGCAACCAACTGAGGGGCGAAGCCGTGATGGAGGCTTGCGTCTTGGTGAGATGGAA
CGTGATTGTCTAATTGCATATGGCGCGAGCATGCTAATATTTGAACGTCTACTGTTATCA
AGTGATCCTTATCAAGTCCAGGTTTGCAGAAAATGTGGCTTGTTAGGCTACTACAATCAC
AAACTGAAGACTTCATACTGTTCAATGTGCAAGAATGGGGAAAACATGGCCAAGATGAGG
CTGCCATACGCTTGCAAGCTTCTATTCCAGGAGTTGCATGCAATGAATGTAGTACCACGC
TTGAAGTTAACCGAAGTATGA

Peptide Sequence

PEP ID

Zm00001d035960_P028
PEP Infomation

pep chromosome:B73_RefGen_v4:6:62662009:62672739:1 gene:Zm00001d035960 transcript:Zm00001d035960_T028 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase III subunit 2
Sequence

MGISRIDETHMEKLRHGTCGFDDFLRDGLIEYLDVNEENNALIALYEHMDQDDVERSSIT
HIEIEPLSILGVVSGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYA
QRPLLTTKTIELVGYDKLGAGQNATVAVMGYSGYDIEDAIVMNKSSLDRGFGRCIALKKY
TVLKDNYGDGVSDMIVEPQRDNGVLIKQNMRALDEDGIAGPGQIIRNHDIYVNKRTPKNT
SKGIGRALRESDYKDSPALYKGVDGETTVVDRVMLCSDTNDKLSIKCIIRHTRRPEVGDK
FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCG
RFHYGSAFGEPSGNADKVADISSTLIKHGFSYNGKDFLYSGILGQPLEAYIFMGPIYYQK
LKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLLS
SDPYQVQVCRKCGLLGYYNHKLKTSYCSMCKNGENMAKMRLPYACKLLFQELHAMNVVPR
LKLTEV

Transcript Sequence

Transcript ID

Zm00001d035960_T028
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:62662009:62672739:1 gene:Zm00001d035960 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase III subunit 2
Sequence

ACCAAACAAAAAATGGGACGACTTCATTCTGCTTGCTAAACACAGAATGGAACGACTCCA
TTCTCAGAAATTGAAATGGAGCCGCTCTATTCCAGTTGACTCCCTAACCAAACACACCCT
TACGTTTTTTATGGATTTCAACTCTAGCCTACACCAAGTTGCTTGAGACAAAGACTTTGT
TGTTGTATCTGCAATGCTTTGCATGTTTTTCATCAACTAATATGTTGCAAGATACTAACC
TTGTACCTGCTTTTATAGCATTGCGTTCACATTGCCTCTGATGGTGGCCGTGTTTGTCGC
CCACTTATAATTGCTGATATGGGGATATCAAGGATCGATGAGACTCACATGGAAAAACTG
AGGCATGGAACTTGTGGTTTTGATGATTTCCTGCGTGATGGGTTGATTGAATATCTTGAT
GTTAATGAAGAAAACAATGCACTGATTGCATTGTATGAGCACATGGATCAAGATGATGTT
GAAAGAAGCAGCATCACACACATTGAAATAGAGCCATTGAGTATCTTAGGGGTTGTATCT
GGACTTATTCCATATCCACACCATAACCAATCTCCACGTAATACTTACCAGTGTGCAATG
GGTAAGCAAGCGATGGGAAATATTGCATATAATCAGTTGTTCAGAGCAGATTCACTACTG
TACTTACTAGTGTATGCACAACGGCCACTGCTAACGACGAAAACTATTGAGTTGGTGGGG
TATGATAAACTTGGCGCTGGGCAGAACGCCACTGTTGCTGTCATGGGATATAGTGGTTAT
GATATTGAAGATGCAATTGTGATGAACAAGTCATCCCTTGATCGAGGATTTGGCCGTTGC
ATAGCATTGAAAAAGTACACAGTTTTAAAGGATAACTATGGAGATGGTGTATCCGATATG
ATTGTTGAACCCCAAAGAGATAATGGTGTTTTGATTAAACAGAATATGAGAGCGTTGGAT
GAAGATGGAATTGCCGGACCTGGTCAAATTATTCGCAATCATGATATCTATGTAAACAAG
CGAACTCCCAAAAACACTTCAAAAGGTATTGGTAGGGCATTGAGAGAAAGTGACTACAAG
GACTCACCTGCCTTGTACAAAGGTGTTGATGGTGAGACTACTGTGGTAGATCGTGTAATG
CTGTGCTCAGATACAAATGATAAGTTATCCATTAAGTGTATTATTCGTCACACTAGAAGG
CCAGAGGTTGGTGACAAATTCAGTAGCAGACATGGGCAGAAAGGTGTCTGTGGTACGATT
GTTCAGCAAGAAGACTTCCCCTTCTCTGAGAGAGGAATCTGTCCTGATTTAATCATGAAT
CCACATGGTTTCCCAAGTCGTATGACAATAGGTAAAATGATTGAACTTCTTGGTGGAAAG
GCTGGTGTTTCTTGTGGACGGTTTCACTATGGCAGTGCATTTGGTGAGCCAAGTGGTAAT
GCTGACAAGGTTGCAGACATAAGCTCTACTCTAATCAAGCATGGTTTCAGCTATAATGGA
AAAGATTTCTTGTACTCAGGCATTCTTGGTCAGCCTCTTGAGGCATACATCTTCATGGGA
CCAATCTACTATCAGAAACTAAAGCACATGGTTCTTGATAAGATGCATGCTCGAGCTAGT
GGACCGCGGGTGTTACTGACGAGGCAACCAACTGAGGGGCGAAGCCGTGATGGAGGCTTG
CGTCTTGGTGAGATGGAACGTGATTGTCTAATTGCATATGGCGCGAGCATGCTAATATTT
GAACGTCTACTGTTATCAAGTGATCCTTATCAAGTCCAGGTTTGCAGAAAATGTGGCTTG
TTAGGCTACTACAATCACAAACTGAAGACTTCATACTGTTCAATGTGCAAGAATGGGGAA
AACATGGCCAAGATGAGGCTGCCATACGCTTGCAAGCTTCTATTCCAGGAGTTGCATGCA
ATGAATGTAGTACCACGCTTGAAGTTAACCGAAGTATGACAGATGCTGGGACTGTACAAT
GAGAGAGATGCTGGATTCGAAATGTGTTTAGAGCTATATGATAAATTAAAGCCCTCTTTG
ATAGGGGCATAGGGCTTTTTTTTTTTTGTTAACTGGTTCGAGAGAAACCACGTTTAGGTG
TGTGGTTTCAGCCGTCTAGCTAGTCTCTTCGCGGGCTTCTCTTCTCCCGCGGAGGTATAC
AAGCTATCGCCGGGCAATTGTTGTATATATAGTTTTTTCCCGATGT