Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035818_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:6:52784582:52789408:1 gene:Zm00001d035818 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
Sequence

ATGGCCGTGGCCATGCGTCCGAAGGACAGTGTCGCCAGTGCCGGTTCCTCCGCACACAAC
TCCGAGGCATCCGAGTACAGCGGCCTAGTGGAAGGTATGTCACCGCGGGCGGTGCCGCCG
CCTGCGTCCGCTGCAACTGAGTATTCATATTCAGGTGGGGCCCATTACCTTAGTGCTTTC
CCGGAGTCGGTTGGGTTCACTGCAGTCTCGTTGTCATCTCCGGCGATGGGCATCCCGGCT
CAAAATCCCATCTTTGTTGTGACAGAGCCATCAACGTTACCGCCTCATCAGGTTGCTCCT
GCTTATGCAACACCGCATCAGCCGCCTCAAGTAACCACTTATGTGCAGCAGCAGCCTCAA
GTCACCCATTATGTACAACACCAGCATCCTCAGTCTGCTGCTTATGTGCAGCAGGTGCCG
CAGTCGTACATAGAGCCACAGCAGGTACAATACATCAACACCCAACAATTTGGTGGGCAT
GGGGTGCCGCAATCTGTCAATTACGTGCCTGTGCATATGAACCAATTCATGCCCAGCATT
CCTGTGACGGGTTCTTTGGCCACCACTGCTGCTCAAGGCAGTACGTTCAGGCCTGCTTCC
GCAGGTGCAGAACCAGTTCTGGAGACCACACAGTTCACAAGGCCAGTGCAAGCTCAGGTT
GATCATAGTTACCGGGTGGTGCAAACTCCGCTATCACAGCTTCCTCCTTTGTCTTCTGTG
CATCAGCAGGCAAATGATGCGCAGAGGCAGAGGTTTGGTGTTCAACAAGCGATGATAAGT
GCAGTAAGCATGCCAGTGGTGACCAGTTCAGGCACAATTCCTGTGGTGGTTAGCTCGGCC
ACTGTTCCATCATTGAGATATGATGATTGCACAATGTGCCAAAAAGCATTGCCACATGCT
CATTCAGATAATATTATCCGGGAGCAGGGAAATTCTCGTGCAACAGGCAACCTTGAGGCA
GCTCCAATGTTTTATAGCCCCCATCAAGACAGTGGATCCAACAAATCTAGTCTAGGTGCA
AGTTCAGGAACTCCTACAAACTATGTGGCGGAACCAAGAGCTGGGAACACAGCAGTGATG
ACACAATTTAATTCGACTCTTCCTGCCAGAAAACCTGCAGTTCAGGCAACTGCATCTCCG
GATACAGGTGTGCCGGTTCAACCCACCGTGATTCCTTTACCAGTGTCCAGTGCACCTGCT
CCAGATGGAGTATTTGTCGGTCATTCTCCTCAGGCTGGGGCTGAAGATCCTGTCAGGTAC
CAGCAGCAACTATTCTCTTATAGCATGCAGCCAGCACAAGTTCTAGTGAATGGCCCACAA
GGCATTGATGCCAGTGCATACAAGGATTCAAATCATCCAGCAGCGGAACCGCTGAGAGAA
TATGCACACAATCTTCTTCATGACTATGCCAGAGCTATCGATGTTCATACGCAAGCAGTT
CATTTGGGTCCTATTGCACCACCAGAATCTACTGTGCATGGGAAGCCTTCTACTTATGGT
ATCATTGATCATGCCAAAGTTGGAAAGCTACCTTTAAATATTGATGGTAGTTCTATCTAC
AAATCTCAAGCTGGAGGGTATCATATAGGGATTACAAATGCCTTTGCTGCTCCTGCATTC
AACCAAGAGGAAAACATTTCCAGGCACAGTGAGAAGCCACGTTATGCTTTTGATATTGGT
ACACAAAATGTCCATCCTGACATAATCCAGCAACCACCCAATCTGGCTGTCCAGAGCAAC
CTTATAGCTCCCATTGAACCACCTGGTTCTAATGAAAAGGTTACTGTGCTACCATCTAAC
TCTGGTGCTCAGGTTCCTTCTGGATCACCTGTACAGCGTCCTAAAGAAATGGCCAATCAC
TTGGTTTCAATTCCCCCCAATGGCAGTAACAAATTTCCATTGCAGTCTACTGTTGGTATT
GATCGTGTTGAAGGTACACAGGAACCGGCTTATGCAGATTCACTTTTCTCAAATCAGGAT
CCTTGGAAAGCAGTGGGCAATGCATCTTTAGTGCCTCCAAGACCAAACAAGCTAACTAAG
GAGTCTGTTGTTTCTGGAGGTCAATATATTGATGGCCATATGCCTGATATGAACATGCAT
GCTGCCATACCCTCAGAAGAAGACTCATGTTTTAAGGATATGCACACAGTTAAATTGAAC
AAAGGACCTGGAGAAGATAGTATCAAGCGACAATTACAAGCTGTTGCTGAAGGGGTAGCC
GCATCAGTTCTTCAGCCACCCTTTCCTGAAAAAACAGTGGTGTTCTCTGGGGATCACATC
GATTCGCATGGAGCAGAAGTTGATGTCAAGTTCCAGGATGAAGGGAACAATCAGTCAGAC
AAAATAAGTCAAGGGGTTCAAGTTTTAGATGACAACGATAACCTTCAGATAATAAAGAAC
AGTGACCTTGAAGAATTGCGTGAACTTGGTTCTGGAACCTTTGGTACTGTTTACCATGGA
AAGTGGAGAGGTTCAGATGTTGCTATAAAGAGAATCAACGATCGATGCTTTGCTGGGAAG
GCTTCTGAGCAAGAGCGTATGGTATGA

Peptide Sequence

PEP ID

Zm00001d035818_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:6:52784582:52789408:1 gene:Zm00001d035818 transcript:Zm00001d035818_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
Sequence

MAVAMRPKDSVASAGSSAHNSEASEYSGLVEGMSPRAVPPPASAATEYSYSGGAHYLSAF
PESVGFTAVSLSSPAMGIPAQNPIFVVTEPSTLPPHQVAPAYATPHQPPQVTTYVQQQPQ
VTHYVQHQHPQSAAYVQQVPQSYIEPQQVQYINTQQFGGHGVPQSVNYVPVHMNQFMPSI
PVTGSLATTAAQGSTFRPASAGAEPVLETTQFTRPVQAQVDHSYRVVQTPLSQLPPLSSV
HQQANDAQRQRFGVQQAMISAVSMPVVTSSGTIPVVVSSATVPSLRYDDCTMCQKALPHA
HSDNIIREQGNSRATGNLEAAPMFYSPHQDSGSNKSSLGASSGTPTNYVAEPRAGNTAVM
TQFNSTLPARKPAVQATASPDTGVPVQPTVIPLPVSSAPAPDGVFVGHSPQAGAEDPVRY
QQQLFSYSMQPAQVLVNGPQGIDASAYKDSNHPAAEPLREYAHNLLHDYARAIDVHTQAV
HLGPIAPPESTVHGKPSTYGIIDHAKVGKLPLNIDGSSIYKSQAGGYHIGITNAFAAPAF
NQEENISRHSEKPRYAFDIGTQNVHPDIIQQPPNLAVQSNLIAPIEPPGSNEKVTVLPSN
SGAQVPSGSPVQRPKEMANHLVSIPPNGSNKFPLQSTVGIDRVEGTQEPAYADSLFSNQD
PWKAVGNASLVPPRPNKLTKESVVSGGQYIDGHMPDMNMHAAIPSEEDSCFKDMHTVKLN
KGPGEDSIKRQLQAVAEGVAASVLQPPFPEKTVVFSGDHIDSHGAEVDVKFQDEGNNQSD
KISQGVQVLDDNDNLQIIKNSDLEELRELGSGTFGTVYHGKWRGSDVAIKRINDRCFAGK
ASEQERMV

Transcript Sequence

Transcript ID

Zm00001d035818_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:52784582:52789408:1 gene:Zm00001d035818 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
Sequence

TGGACGAGTCTGGGCAGCGGTACATCGACACCATCAACTGCGTCTCCGCGGAGGCTATGG
CCGTGGCCATGCGTCCGAAGGACAGTGTCGCCAGTGCCGGTTCCTCCGCACACAACTCCG
AGGCATCCGAGTACAGCGGCCTAGTGGAAGGTATGTCACCGCGGGCGGTGCCGCCGCCTG
CGTCCGCTGCAACTGAGTATTCATATTCAGGTGGGGCCCATTACCTTAGTGCTTTCCCGG
AGTCGGTTGGGTTCACTGCAGTCTCGTTGTCATCTCCGGCGATGGGCATCCCGGCTCAAA
ATCCCATCTTTGTTGTGACAGAGCCATCAACGTTACCGCCTCATCAGGTTGCTCCTGCTT
ATGCAACACCGCATCAGCCGCCTCAAGTAACCACTTATGTGCAGCAGCAGCCTCAAGTCA
CCCATTATGTACAACACCAGCATCCTCAGTCTGCTGCTTATGTGCAGCAGGTGCCGCAGT
CGTACATAGAGCCACAGCAGGTACAATACATCAACACCCAACAATTTGGTGGGCATGGGG
TGCCGCAATCTGTCAATTACGTGCCTGTGCATATGAACCAATTCATGCCCAGCATTCCTG
TGACGGGTTCTTTGGCCACCACTGCTGCTCAAGGCAGTACGTTCAGGCCTGCTTCCGCAG
GTGCAGAACCAGTTCTGGAGACCACACAGTTCACAAGGCCAGTGCAAGCTCAGGTTGATC
ATAGTTACCGGGTGGTGCAAACTCCGCTATCACAGCTTCCTCCTTTGTCTTCTGTGCATC
AGCAGGCAAATGATGCGCAGAGGCAGAGGTTTGGTGTTCAACAAGCGATGATAAGTGCAG
TAAGCATGCCAGTGGTGACCAGTTCAGGCACAATTCCTGTGGTGGTTAGCTCGGCCACTG
TTCCATCATTGAGATATGATGATTGCACAATGTGCCAAAAAGCATTGCCACATGCTCATT
CAGATAATATTATCCGGGAGCAGGGAAATTCTCGTGCAACAGGCAACCTTGAGGCAGCTC
CAATGTTTTATAGCCCCCATCAAGACAGTGGATCCAACAAATCTAGTCTAGGTGCAAGTT
CAGGAACTCCTACAAACTATGTGGCGGAACCAAGAGCTGGGAACACAGCAGTGATGACAC
AATTTAATTCGACTCTTCCTGCCAGAAAACCTGCAGTTCAGGCAACTGCATCTCCGGATA
CAGGTGTGCCGGTTCAACCCACCGTGATTCCTTTACCAGTGTCCAGTGCACCTGCTCCAG
ATGGAGTATTTGTCGGTCATTCTCCTCAGGCTGGGGCTGAAGATCCTGTCAGGTACCAGC
AGCAACTATTCTCTTATAGCATGCAGCCAGCACAAGTTCTAGTGAATGGCCCACAAGGCA
TTGATGCCAGTGCATACAAGGATTCAAATCATCCAGCAGCGGAACCGCTGAGAGAATATG
CACACAATCTTCTTCATGACTATGCCAGAGCTATCGATGTTCATACGCAAGCAGTTCATT
TGGGTCCTATTGCACCACCAGAATCTACTGTGCATGGGAAGCCTTCTACTTATGGTATCA
TTGATCATGCCAAAGTTGGAAAGCTACCTTTAAATATTGATGGTAGTTCTATCTACAAAT
CTCAAGCTGGAGGGTATCATATAGGGATTACAAATGCCTTTGCTGCTCCTGCATTCAACC
AAGAGGAAAACATTTCCAGGCACAGTGAGAAGCCACGTTATGCTTTTGATATTGGTACAC
AAAATGTCCATCCTGACATAATCCAGCAACCACCCAATCTGGCTGTCCAGAGCAACCTTA
TAGCTCCCATTGAACCACCTGGTTCTAATGAAAAGGTTACTGTGCTACCATCTAACTCTG
GTGCTCAGGTTCCTTCTGGATCACCTGTACAGCGTCCTAAAGAAATGGCCAATCACTTGG
TTTCAATTCCCCCCAATGGCAGTAACAAATTTCCATTGCAGTCTACTGTTGGTATTGATC
GTGTTGAAGGTACACAGGAACCGGCTTATGCAGATTCACTTTTCTCAAATCAGGATCCTT
GGAAAGCAGTGGGCAATGCATCTTTAGTGCCTCCAAGACCAAACAAGCTAACTAAGGAGT
CTGTTGTTTCTGGAGGTCAATATATTGATGGCCATATGCCTGATATGAACATGCATGCTG
CCATACCCTCAGAAGAAGACTCATGTTTTAAGGATATGCACACAGTTAAATTGAACAAAG
GACCTGGAGAAGATAGTATCAAGCGACAATTACAAGCTGTTGCTGAAGGGGTAGCCGCAT
CAGTTCTTCAGCCACCCTTTCCTGAAAAAACAGTGGTGTTCTCTGGGGATCACATCGATT
CGCATGGAGCAGAAGTTGATGTCAAGTTCCAGGATGAAGGGAACAATCAGTCAGACAAAA
TAAGTCAAGGGGTTCAAGTTTTAGATGACAACGATAACCTTCAGATAATAAAGAACAGTG
ACCTTGAAGAATTGCGTGAACTTGGTTCTGGAACCTTTGGTACTGTTTACCATGGAAAGT
GGAGAGGTTCAGATGTTGCTATAAAGAGAATCAACGATCGATGCTTTGCTGGGAAGGCTT
CTGAGCAAGAGCGTATGGTATGAAAATGCTGTGTTTTAAATTGAATCCACCATGTTCTAA
GTTTTCTTTTGTCAGTAGAGGACTGATTTCTGGAACGAGGCAGACAAGCTTGCATCTTTG
CACCATCCAAACGTAGTAGCCTTCTATGGTGTTGTTGTAGATGGACCTGGTGGATCTGTT
GCAACGGTAACAGAATACATGGCTAATGGCTCACTCCGACAAGCATTACAAAGACATGAA
AACAGGATCTTTGATCGGCGTAGGCGTCTACTAATTGCAATGGATGTTGCATTTGGAATG
GAATATCTCCATGGGAAGAATATAGTGCATTTTGACTTGAAGAGTGACAATCTGCTTGTC
AACCTAAGGTTGGTGATTTGGGATTATCAAAGGTCAAATGCCAGACACTAATCTCTGGCG
GAGTAAGAGGAACACTTCCTTGGATGGCCCCTGAGTTGTTGAATGGCAGCAGCAGCCTTG
TCTCGGAAAAGGTTGACGTCTTCTCGTTTGGCATTGTGATGTGGGAGCTACTTACAGGTG
AAGAGCCTTACGCCGAGCTGCACTATGGGGCCATTATAGGTGGAATCGTGAATAACACGC
TGCGACCTCCGGTGCCCGAGTCCTGTGATCCCCAGTGGAGGTCACTGATGGAGCGGTGCT
GGTCAGCCGAACCGTCAGAGAGGCCGAGCTTCACCGAGGTCGGCAAGAGCCTGCGCGCCA
TGGCTTCTCCTACCAAGGCACAACAATCGAAATAGATGCTTTAGCCTTGCCTCTCGCGTC
CTTCTGTTCAGCAGATTGTTTCAGTCTTCAAACCGAGGAGGTGCCACCATGGCTGGCCTG
CCTTTTGTACATGAATAAGTTGAAGAAAAATACGAGAATGTGGCATGCTTATAGAGTCGG
TGGATGCTTGATGCTTCCTGTCTTGCTTTTGACATGGATCGTGGATATATATGGTAGTAC
AGCGTAGTGTAA