Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035797_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:50384171:50388783:-1 gene:Zm00001d035797 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-box ATP-dependent RNA helicase 7
Sequence

ATGAAATGCAAGTTGGTGGTGCAGATAGGTTCGCAATCTGTTGTGGTCGCTAGAGGGCAG
GCTTACCCTCCAAAGGATGTTGTAACCGTCCATGGGATTGAGCGGCGAGATGACCACACA
AAAGTGCAGGTTGATTTTGTGTTTGACAACTTCTTGGAATTTCCACTCCCTATACCTATC
GCTGGTGGTGATATGTTCACTCTTGGCGAAGCCAAAAATTCATTTGTGTTATGGCCTAAG
TCAGGCATACAACTAGCAGAGGGTAGTGCTGGTTTTGCAACTTGTCCATTATTGCCTGAT
GAGATAGCAAATGTCCGAGAACGGTTGCTCGACTTCTTCATGAATGAGTCTGATCTATAT
ACCTTGGTTGATGGCTTTGTTACACGTAATTCAGCCAGAACAAATCCATCAAACCCCTCA
ATTGAACTTGGTCCTGAGTTCAAGAAGGTTGGGAGCTTCCTTGGTCGCTTCAAGTCCATA
CCTAGCATTGTTGAGCTTGACAGCTTGAAGTCTTTGGTTAATGGGGCAAACAAGGCATCT
AGACGAACTGAACATGGCAGGACCCCAAGTGTTCTCGTTCTGCTACCAACAAGAGAGCTG
GCCAATCAGGTGCACGCTGACTTTGAGTTTTATGGTGCAACATTTGGGCTCTCTGCATGT
TGTGTGTATGGGGGATCACCTTATCATCCTCAAGAAATGGCATTGAGAAGAGGTGTGGAT
ATTGTTGTTGGAACTCCTGGTCGTGTCAAGGATTTCATTGTTAAAGGAACTCTCAATTTG
AAATGCTTGAAATTCTGTGTCCTTGATGAAGCTGATGAGATGCTAAACATGGGTTTTGTT
GATGATGTCGAGCTCATTCTTGGCAAGGTAGAAGATGCTACCAAAGTACAGACGCTTCTG
TTCAATGCCACTCTGCCAGATTGGGTGAATAAGCTCTCTATGAGGTTTCTGAAAGTTGAC
AGGAAAACAGTTGATCTTGTCGGTAATGAGAAACTGAAGGCCAGTGCATCTGTTAAGCAC
CTTGCTCTTCCTTGTAACAAGGCAGCAAGGGCACAAGTTATTCTAGACATTATCCGATTG
GAGGTCGAACCATCATCTTCACTGAGACGAAGGATTCTGCATCACAGCTTTCTGTGTCAG
CAGACTAGAAAGGGAGTCTGGGTTAAATTTGAGCATATCTCTGTGCCACAACCCACTGAT
GTAGCACAATCTGCTGGCAGTGAAGCTGCAGATGCCATTGCGAGTGTGTCAGACAGTGTT
ATTCCTATCTTCAGGCAGCAAGCAGAGCAGTTGCTAAGCTCTTCCAGTCTGTCTGCAGCT
GACTTGCTTGCCAAAGCACTTGCAAAGGCAGTTGTAAAAATATGTGTCTTAGGGTTACAC
GGCCATAAAGAAAAGATCATTGTTATCTTCCTTGGAGGATTACAGTACACTACATCTTCA
AACTGGCAGACCGATGTGGTCACCTGGGTTTGCTATAACATTCCGGTGATCGTATTTCTT
CGTCGTCGGGGTCATATTTGTTCCCATTGGTGTTATCTTCAGTTTGACGTCGGCAACGTG
GTCATGGTGACCGGCGGGAGGAACACCGAGCGTGTAGGAGTGATCAAGAACTGGGAGAAG
CACAAGGGCATCTTCGAGGTCATCGACGTGCTACTTGGAGTTTTTTGCATGCTATGTCTA
GTTTTCTCCTATTTGTTGTACAGGAAAACATAG

Peptide Sequence

PEP ID

Zm00001d035797_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:50384171:50388783:-1 gene:Zm00001d035797 transcript:Zm00001d035797_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-box ATP-dependent RNA helicase 7
Sequence

MKCKLVVQIGSQSVVVARGQAYPPKDVVTVHGIERRDDHTKVQVDFVFDNFLEFPLPIPI
AGGDMFTLGEAKNSFVLWPKSGIQLAEGSAGFATCPLLPDEIANVRERLLDFFMNESDLY
TLVDGFVTRNSARTNPSNPSIELGPEFKKVGSFLGRFKSIPSIVELDSLKSLVNGANKAS
RRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYHPQEMALRRGVD
IVVGTPGRVKDFIVKGTLNLKCLKFCVLDEADEMLNMGFVDDVELILGKVEDATKVQTLL
FNATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARAQVILDIIRL
EVEPSSSLRRRILHHSFLCQQTRKGVWVKFEHISVPQPTDVAQSAGSEAADAIASVSDSV
IPIFRQQAEQLLSSSSLSAADLLAKALAKAVVKICVLGLHGHKEKIIVIFLGGLQYTTSS
NWQTDVVTWVCYNIPVIVFLRRRGHICSHWCYLQFDVGNVVMVTGGRNTERVGVIKNWEK
HKGIFEVIDVLLGVFCMLCLVFSYLLYRKT

Transcript Sequence

Transcript ID

Zm00001d035797_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:50384171:50388783:-1 gene:Zm00001d035797 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-box ATP-dependent RNA helicase 7
Sequence

GACGTGATGAAATGCAAGTTGGTGGTGCAGATAGGTTCGCAATCTGTTGTGGTCGCTAGA
GGGCAGGCTTACCCTCCAAAGGATGTTGTAACCGTCCATGGGATTGAGCGGCGAGATGAC
CACACAAAAGTGCAGGTTGATTTTGTGTTTGACAACTTCTTGGAATTTCCACTCCCTATA
CCTATCGCTGGTGGTGATATGTTCACTCTTGGCGAAGCCAAAAATTCATTTGTGTTATGG
CCTAAGTCAGGCATACAACTAGCAGAGGGTAGTGCTGGTTTTGCAACTTGTCCATTATTG
CCTGATGAGATAGCAAATGTCCGAGAACGGTTGCTCGACTTCTTCATGAATGAGTCTGAT
CTATATACCTTGGTTGATGGCTTTGTTACACGTAATTCAGCCAGAACAAATCCATCAAAC
CCCTCAATTGAACTTGGTCCTGAGTTCAAGAAGGTTGGGAGCTTCCTTGGTCGCTTCAAG
TCCATACCTAGCATTGTTGAGCTTGACAGCTTGAAGTCTTTGGTTAATGGGGCAAACAAG
GCATCTAGACGAACTGAACATGGCAGGACCCCAAGTGTTCTCGTTCTGCTACCAACAAGA
GAGCTGGCCAATCAGGTGCACGCTGACTTTGAGTTTTATGGTGCAACATTTGGGCTCTCT
GCATGTTGTGTGTATGGGGGATCACCTTATCATCCTCAAGAAATGGCATTGAGAAGAGGT
GTGGATATTGTTGTTGGAACTCCTGGTCGTGTCAAGGATTTCATTGTTAAAGGAACTCTC
AATTTGAAATGCTTGAAATTCTGTGTCCTTGATGAAGCTGATGAGATGCTAAACATGGGT
TTTGTTGATGATGTCGAGCTCATTCTTGGCAAGGTAGAAGATGCTACCAAAGTACAGACG
CTTCTGTTCAATGCCACTCTGCCAGATTGGGTGAATAAGCTCTCTATGAGGTTTCTGAAA
GTTGACAGGAAAACAGTTGATCTTGTCGGTAATGAGAAACTGAAGGCCAGTGCATCTGTT
AAGCACCTTGCTCTTCCTTGTAACAAGGCAGCAAGGGCACAAGTTATTCTAGACATTATC
CGATTGGAGGTCGAACCATCATCTTCACTGAGACGAAGGATTCTGCATCACAGCTTTCTG
TGTCAGCAGACTAGAAAGGGAGTCTGGGTTAAATTTGAGCATATCTCTGTGCCACAACCC
ACTGATGTAGCACAATCTGCTGGCAGTGAAGCTGCAGATGCCATTGCGAGTGTGTCAGAC
AGTGTTATTCCTATCTTCAGGCAGCAAGCAGAGCAGTTGCTAAGCTCTTCCAGTCTGTCT
GCAGCTGACTTGCTTGCCAAAGCACTTGCAAAGGCAGTTGTAAAAATATGTGTCTTAGGG
TTACACGGCCATAAAGAAAAGATCATTGTTATCTTCCTTGGAGGATTACAGTACACTACA
TCTTCAAACTGGCAGACCGATGTGGTCACCTGGGTTTGCTATAACATTCCGGTGATCGTA
TTTCTTCGTCGTCGGGGTCATATTTGTTCCCATTGGTGTTATCTTCAGTTTGACGTCGGC
AACGTGGTCATGGTGACCGGCGGGAGGAACACCGAGCGTGTAGGAGTGATCAAGAACTGG
GAGAAGCACAAGGGCATCTTCGAGGTCATCGACGTGCTACTTGGAGTTTTTTGCATGCTA
TGTCTAGTTTTCTCCTATTTGTTGTACAGGAAAACATAGAATGGAATTCAAATTTGGTGG
TCGCAAAAGTGTGGAGACTTGATTCATATACAGTTAAGCTTAACATTAGTGCAAATAGTT
GTATTTTAGTTTAGATTTAGAGTACACTTATGTATGCCTTGTTTGACAATGCTTATTTAT
GATATATTGAAGGGTACTTATTTATATTATATTAA