Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035789_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:6:49258185:49261935:-1 gene:Zm00001d035789 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histidine--tRNA ligase cytoplasmic
Sequence

ATGGCGTCCTCAGCCGCCGCCGCCGCCGCCACCGTCATGCTCGGCGGCAAGGGCTCCGCC
CTGTCCCCGGCCGCCGTTTACGCGTTCTCCCTCGGCCTCGCCGCCCCGGGCATCGACCCT
TCCGCGCACAAGTCGCTCTCTACCCGCGCGCCCTCGCCGCAGGAGACCCCCGCGCGGCTC
GCCGCCGCCCTCGCGGCGCTGGCGCCGGCCGAGTCCCGCGCCGCCGCGGCGGTGCTGCTT
AACAAGCTGGTCCTCACGTCGTCCGACTCCGCCTCCGCGCTCGTCACCGCCGCCACGGTC
GCCCGCCTCGCGGACTCGCTCGACCTCGCCGCCGCGCTGCCGCTGGCCTCCCGCGACGAG
GCCGCGGTGGCCGCGGCGACCGCGCCCGTCGCCGTCGCGCTAGCGGCGCTGATCGATTGC
TGCGCCGCGCCGCTGGCTCGCGTCGCCGACGCCGTCGCCGCGCTGTCGTGCGAGGCCGCG
CGCGGGGACGCCGCGGCCTTCGACGTGCCGGCCTCCGGCGACGGGCTCTGCGCCAAGGAC
GAGGCCGACGTCGCCGCCGACATCAAGGTGCTCGTCTTCGGCTCCAAGCTTGTCGGCGCT
GCTGGGGGCGTCCCCGCCGCCGCCACGTTCGCCAAGGTGCCCGCGCTGAACGGGATCTTC
CGCCAGGCGGTGCGGGCGCTGCATGTCTTAGTGCGCATCGAGCTCAACGCACCCGTCAAA
TTGGGGAAGAGGGATGCTGGTGAAACCGGTGAGGGGAAGGAGGAGGCACTGGTGGTGCTG
GCCACACAGCTCGCTAGAGCAGTGCAGGCACTCAGCAAGCTGAGCATTGCCCGGGCACGG
CTCTGTGCGGAGAGTATTGCTGATGCTGAGCTTCGGGAGAAGCTTACTGGTGGCGTTAGC
GTTGATGATTTGAAGGGGATGCTTGACAATGTTTTGATTGATTCAGATGCCGTATCAGTC
TTGAAGGGGGTGTACAACCACTTGCTCAAGTTCAGGGACTTTCTTGCCTGGGAAGCAGCT
GTGGCCATGGCAGTAATTGAAGCAGACAGTTCAATTGAGAAGCCACAAGCTGCTGTTGAG
AATGAAGCAGCCAGTGTAACTGAGAAGCCACTGGCTGGTGGGGACAAAGCAAAGGGTGAC
AAGAAGAGCAAGAAGAAGAAAACTTTGGGTAAGGGTACTTCTGCTGTGCTCATGCTGCTT
AGGGACCATGTGACAAATGGAAGTACTGTTGCTGCCATGAATTCTGCGTCGGTTGCAGAG
TGGGCAACCTCTCTGTCATTGCTATTTGATCCCAAATGTCCAGGATTGGAGTCACTTGTG
GAGAAGGTGAAGGAGATTGTTGAGAGCAATGAAGTGAGGAGATTGCCTAAAATTCCAAAG
GGTACACGCGACTTTGGTAAAGAGCAAATGGCGATAAGGGAGCGAGCATTTTCAATTATA
ACTAGTGTATTCAAGATGCATGGTGCTACTGCGCTTGATACACCCGTATTTGAGCTGAGA
GAAACCCTTATGGGAAAATATGGTGAAGACTCAAAGTTGATATATGACTTAGCTGATCAG
GGTGGTGAGCTTTGCTCTTTGCGGTATGATCTGACTGTTCCATTTGCCCGTTATGTTGCC
ATGAATAGCATTAGTGCATTAAAGAGATACCAAATAGCGAAAGTATATAGGAGAGATAAT
CCATCTAAGGGAAGATACCGAGAATTCTACCAATGTGACTTTGACATTGCTGGTGTATAT
GAACCTATGGAACCGGATTTTGAGGTCATAAAAGTTCTGACTGAATTGCTGAATCAGCTG
GATATAGGCACATATGAGATAAAATTAAATCACAGAAAGTTGCTTGATGGTATGTTGGAG
ATTTGTGGTGTGCCCCCTCAAAAGTTCAGAACAGTTTGCTCGAGTATTGACAAACTGGAC
AAGCAAACATTCGAACAGGTGAAGAAGGAACTGGTTGATGAGAAAGGTATATCAAATGAA
ACTGCGGATGAAATTGGCAATTTAGTGAAGACTAGGGGCCCCCCGTTGGAAGTTTTGATG
GAGTTGAGAAAGGAGGGCAGCAAGTTTATGAATAATGTAGGGTCTGTTGCTGCACTGAAT
GAGCTGGAGATATTATTCAAAGCTCTGGATAAAGCAAATGCAATAAGCAAGATAACTTTT
GATTTAAGTTTGGCCAGGGGCCTTGATTACTACACTGGTGTCATATATGAAGCCGTTTTC
AAGGGTGCAGCTCAGGTTGGCTCCATAGCGGCTGGTGGTCGGTACGACAACCTTGTGGGT
ATGTTTAGTGGGAAGCAAATCCCTGCTGTTGGTGTGAGCCTTGGAATTGAGAGAGTCTTT
GCAATCATGGAGCAGCAGGAGAAAGAAAGAAATGAGAAGATCCGGCCTACAGAGACAGAG
GTGCTGGTGTCAATTCTGGGAAAGGACCTTACCCTAGCTGCCGAGCTCGTGAGCGAGCTG
TGGAATGCTGGGATAAAGGCAGAGTTCAAGCTCACTACCAGGGTGGCGAACCACATCAAG
TATGCCTTGCAATCAAGCATTCCGTGGATGGTGCTAGTCGGCGAGTCTGAGCTGCAGAAA
GGAACTGTAAAGTTGAAGGACGTTGAAGCCAACCAGGAAGAAGAGGTTGATAGGAAGGAT
TTTGTTCGAGAGTTGAAGAAGAGATTGAGTAAATCCTAA

Peptide Sequence

PEP ID

Zm00001d035789_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:6:49258185:49261935:-1 gene:Zm00001d035789 transcript:Zm00001d035789_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histidine--tRNA ligase cytoplasmic
Sequence

MASSAAAAAATVMLGGKGSALSPAAVYAFSLGLAAPGIDPSAHKSLSTRAPSPQETPARL
AAALAALAPAESRAAAAVLLNKLVLTSSDSASALVTAATVARLADSLDLAAALPLASRDE
AAVAAATAPVAVALAALIDCCAAPLARVADAVAALSCEAARGDAAAFDVPASGDGLCAKD
EADVAADIKVLVFGSKLVGAAGGVPAAATFAKVPALNGIFRQAVRALHVLVRIELNAPVK
LGKRDAGETGEGKEEALVVLATQLARAVQALSKLSIARARLCAESIADAELREKLTGGVS
VDDLKGMLDNVLIDSDAVSVLKGVYNHLLKFRDFLAWEAAVAMAVIEADSSIEKPQAAVE
NEAASVTEKPLAGGDKAKGDKKSKKKKTLGKGTSAVLMLLRDHVTNGSTVAAMNSASVAE
WATSLSLLFDPKCPGLESLVEKVKEIVESNEVRRLPKIPKGTRDFGKEQMAIRERAFSII
TSVFKMHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVA
MNSISALKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMEPDFEVIKVLTELLNQL
DIGTYEIKLNHRKLLDGMLEICGVPPQKFRTVCSSIDKLDKQTFEQVKKELVDEKGISNE
TADEIGNLVKTRGPPLEVLMELRKEGSKFMNNVGSVAALNELEILFKALDKANAISKITF
DLSLARGLDYYTGVIYEAVFKGAAQVGSIAAGGRYDNLVGMFSGKQIPAVGVSLGIERVF
AIMEQQEKERNEKIRPTETEVLVSILGKDLTLAAELVSELWNAGIKAEFKLTTRVANHIK
YALQSSIPWMVLVGESELQKGTVKLKDVEANQEEEVDRKDFVRELKKRLSKS

Transcript Sequence

Transcript ID

Zm00001d035789_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:49258185:49261935:-1 gene:Zm00001d035789 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histidine--tRNA ligase cytoplasmic
Sequence

ATGGCGTCCTCAGCCGCCGCCGCCGCCGCCACCGTCATGCTCGGCGGCAAGGGCTCCGCC
CTGTCCCCGGCCGCCGTTTACGCGTTCTCCCTCGGCCTCGCCGCCCCGGGCATCGACCCT
TCCGCGCACAAGTCGCTCTCTACCCGCGCGCCCTCGCCGCAGGAGACCCCCGCGCGGCTC
GCCGCCGCCCTCGCGGCGCTGGCGCCGGCCGAGTCCCGCGCCGCCGCGGCGGTGCTGCTT
AACAAGCTGGTCCTCACGTCGTCCGACTCCGCCTCCGCGCTCGTCACCGCCGCCACGGTC
GCCCGCCTCGCGGACTCGCTCGACCTCGCCGCCGCGCTGCCGCTGGCCTCCCGCGACGAG
GCCGCGGTGGCCGCGGCGACCGCGCCCGTCGCCGTCGCGCTAGCGGCGCTGATCGATTGC
TGCGCCGCGCCGCTGGCTCGCGTCGCCGACGCCGTCGCCGCGCTGTCGTGCGAGGCCGCG
CGCGGGGACGCCGCGGCCTTCGACGTGCCGGCCTCCGGCGACGGGCTCTGCGCCAAGGAC
GAGGCCGACGTCGCCGCCGACATCAAGGTGCTCGTCTTCGGCTCCAAGCTTGTCGGCGCT
GCTGGGGGCGTCCCCGCCGCCGCCACGTTCGCCAAGGTGCCCGCGCTGAACGGGATCTTC
CGCCAGGCGGTGCGGGCGCTGCATGTCTTAGTGCGCATCGAGCTCAACGCACCCGTCAAA
TTGGGGAAGAGGGATGCTGGTGAAACCGGTGAGGGGAAGGAGGAGGCACTGGTGGTGCTG
GCCACACAGCTCGCTAGAGCAGTGCAGGCACTCAGCAAGCTGAGCATTGCCCGGGCACGG
CTCTGTGCGGAGAGTATTGCTGATGCTGAGCTTCGGGAGAAGCTTACTGGTGGCGTTAGC
GTTGATGATTTGAAGGGGATGCTTGACAATGTTTTGATTGATTCAGATGCCGTATCAGTC
TTGAAGGGGGTGTACAACCACTTGCTCAAGTTCAGGGACTTTCTTGCCTGGGAAGCAGCT
GTGGCCATGGCAGTAATTGAAGCAGACAGTTCAATTGAGAAGCCACAAGCTGCTGTTGAG
AATGAAGCAGCCAGTGTAACTGAGAAGCCACTGGCTGGTGGGGACAAAGCAAAGGGTGAC
AAGAAGAGCAAGAAGAAGAAAACTTTGGGTAAGGGTACTTCTGCTGTGCTCATGCTGCTT
AGGGACCATGTGACAAATGGAAGTACTGTTGCTGCCATGAATTCTGCGTCGGTTGCAGAG
TGGGCAACCTCTCTGTCATTGCTATTTGATCCCAAATGTCCAGGATTGGAGTCACTTGTG
GAGAAGGTGAAGGAGATTGTTGAGAGCAATGAAGTGAGGAGATTGCCTAAAATTCCAAAG
GGTACACGCGACTTTGGTAAAGAGCAAATGGCGATAAGGGAGCGAGCATTTTCAATTATA
ACTAGTGTATTCAAGATGCATGGTGCTACTGCGCTTGATACACCCGTATTTGAGCTGAGA
GAAACCCTTATGGGAAAATATGGTGAAGACTCAAAGTTGATATATGACTTAGCTGATCAG
GGTGGTGAGCTTTGCTCTTTGCGGTATGATCTGACTGTTCCATTTGCCCGTTATGTTGCC
ATGAATAGCATTAGTGCATTAAAGAGATACCAAATAGCGAAAGTATATAGGAGAGATAAT
CCATCTAAGGGAAGATACCGAGAATTCTACCAATGTGACTTTGACATTGCTGGTGTATAT
GAACCTATGGAACCGGATTTTGAGGTCATAAAAGTTCTGACTGAATTGCTGAATCAGCTG
GATATAGGCACATATGAGATAAAATTAAATCACAGAAAGTTGCTTGATGGTATGTTGGAG
ATTTGTGGTGTGCCCCCTCAAAAGTTCAGAACAGTTTGCTCGAGTATTGACAAACTGGAC
AAGCAAACATTCGAACAGGTGAAGAAGGAACTGGTTGATGAGAAAGGTATATCAAATGAA
ACTGCGGATGAAATTGGCAATTTAGTGAAGACTAGGGGCCCCCCGTTGGAAGTTTTGATG
GAGTTGAGAAAGGAGGGCAGCAAGTTTATGAATAATGTAGGGTCTGTTGCTGCACTGAAT
GAGCTGGAGATATTATTCAAAGCTCTGGATAAAGCAAATGCAATAAGCAAGATAACTTTT
GATTTAAGTTTGGCCAGGGGCCTTGATTACTACACTGGTGTCATATATGAAGCCGTTTTC
AAGGGTGCAGCTCAGGTTGGCTCCATAGCGGCTGGTGGTCGGTACGACAACCTTGTGGGT
ATGTTTAGTGGGAAGCAAATCCCTGCTGTTGGTGTGAGCCTTGGAATTGAGAGAGTCTTT
GCAATCATGGAGCAGCAGGAGAAAGAAAGAAATGAGAAGATCCGGCCTACAGAGACAGAG
GTGCTGGTGTCAATTCTGGGAAAGGACCTTACCCTAGCTGCCGAGCTCGTGAGCGAGCTG
TGGAATGCTGGGATAAAGGCAGAGTTCAAGCTCACTACCAGGGTGGCGAACCACATCAAG
TATGCCTTGCAATCAAGCATTCCGTGGATGGTGCTAGTCGGCGAGTCTGAGCTGCAGAAA
GGAACTGTAAAGTTGAAGGACGTTGAAGCCAACCAGGAAGAAGAGGTTGATAGGAAGGAT
TTTGTTCGAGAGTTGAAGAAGAGATTGAGTAAATCCTAAGAGGAAAATTTTAGGCGTTGA
TATCATCTTTTGACACCCATTTGACGCAAACTCAATTAGGGGGAGAATGACATTACATCA
TTATAATTTAAACTGACGTGAATGTTTCAGTCCGGTTGGCATAGGGCCACTTGTTATGTT
CATAAGGTCATTCGAATCCCCTGAGTCCCAATGCATTATGCTGATGAATCAGGCTGCAGA
CATATTGTGAATTATATTCTTTTTGTACTACCTTGAGGAATGAAAAGTTTTTGTCCTCAC
ATGTAATTT