Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035679_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:6:40854638:40860292:1 gene:Zm00001d035679 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pumilio homolog 3
Sequence

ATGGATAGGCAGACTGCCAGCCACAATAGTAGTGAATCATTATGTTCTTCTGGAATACAG
TATGGTCTAAATCGTGGACCTGGAACTATTGGAGGCCTGCACTCTAGCAATAGTTTACGA
AGCTTGGATGAAATTCCGAACAATGATCTGCCATCAAATACATTTGCTTCTCTTTTAGGG
TCATCTCTTTCTAGGAGTGCATCTCCAGATCCTGAGCTTGTGAGGAGGGCCCCTAGTCCA
TCCCTTCCTCCAATCGGTGTGAAAGTTGGCAACACTGATAAGATGAATGGTGGTTCCTCT
TCTTTCCGTCGTAGTTCATCCGCAATCGGTGGATCTGATGATCTGGTGGCTGCCTTATCT
GGGATGAACTTATCATCTAGGGCAATGAGTGGGCAAACTATGGACCAGTCTCAGCTCTAT
CAGGATGTTGATAACGTCCAGAAGTTTCTTTTTGATCGACAGGGTGACCAACCAAATGGC
AATCAGCAGCACTACATGAGGCGTCCTGAGCATGGACAATCTAAGTTATCTGATGGATAT
TCTGCCAATTTGGCCAATTCATCCACGATGAGAAACCAGATTAATTCTGGCAGTTTCACA
TCTTTTGACAGTTTGTCTCTTGGATCTGGCTTTCCTTCCCCTAGGATTGGTTCTAGATCC
CCTGGAGGGACTGTATCTTCTCGACAAAATTTAGCTGGTATGTCTAACATGCTAAACTAT
AATGGAATTGGAAGTCCAACTGCGTCACCTTCTCTTCAGACTTCTATTGATCCAGCGTAT
ATCCAGTACCTTGCTCAAATTGCAGCTACCTGGGATGATCCTCTAATGGACAGGAGCCAT
CTGGGAAGTTCTTACATGGACTTACTTGGTACACAGAAAGCTAACCTTGGCCCTTTACTT
CAGTCACAAAAGCAATATGGTTACTGTGGCAATCTTGGATTTAACCTTGGTGGTTATGCT
GGAAGTCCATTGACAAGTCCTGTTCTTCCCTCTTCACCTATTGCACCAGGCAGTCCACTT
AGGCATGGTGACCGCAACATGCGCTTTCCACCAGGCATGAGAAACTTCGGTAATTCCTTT
GGTTCATGGAATTCAGGCATGAGTGGAAAGATGGATGCTAATTTGATGCCCTCTCTCCTG
GAGGAATTCAAGAGCAACAAAAGTAAATCATATGAGCTCTCCGAAATAGCTGGCCATGTT
GTTGAGTTTAGTGCTGATCAATATGGAAGCCGGTTCATACAACAGAAGCTAGAAACAGCC
AGTACTGAAGAAAAGGACATGGTTTTTTCAGAAATTATGCCTCAAGCTCTCACATTAATG
ACTGATGTATTTGGAAATTATGTTGTCCAAAAGTTTTTTGAGCATGGAAGCACTGCCCAG
ATAAAGGAATTGGCTGGTCAGCTTATTGGACGTGTCCTTGCTCTTAGTCTTCAGATGTAT
GGGTGCCGGGTTATACAGAAGGCTATAGAAGTTGTTGATTTGGATCTGCAGACTAAAATG
GTTGCGGAGCTGGAGGGTCATGTCATGCGCTGTGTACGTGATCAAAATGGGAACCATGTT
ATACAGAAATGCATAGAGTGCATTCCTCAGCATGCTATCGAGTTCATTGTCTCGACATTC
TATGGCCAAGTTGTAATGTTATCCACTCATCCATATGGTTGCCGAGTTATTCAGAGGGTT
CTAGAGCATTGTGATGATCCTAAGACACAGCAAATAATGATGGATGAGATTCTCCAGTCT
GTTTGCTTGCTAGCTCAGGACCAGTATGGCAACTATGTGGTTCAGCATGTTCTGGAACAT
GGCAAGCCCCATGAGAGATCAGCCATTATTGAGAAGCTAATTGGCCAAGTTGTGCAAATG
AGCCAGCAAAAGTTTGCCTCTAATGTCATTGAGAAGTGCTTAGCCTTTGGAAATCCTGTA
GAACGTCAGGTTCTGATCGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCTCTTGAG
GTAATGATGAAAGACCAGTTCGCAAACTATGTGGTGCAGAAGGTGCTAGAAACTTGTGAC
GATCAGCAGAGGGAGATGATCTTAACAAGGATAAAGACACACTTGAACACACTCAAGAAG
TACACATACGGGAAGCACATAGTAGCGCGTGTAGAGAAGCTTGTTGCTGCTGGAGAGAAG
CGCCTTGGGCTTCAACCAGCATGCACCGCCGCCTGA

Peptide Sequence

PEP ID

Zm00001d035679_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:6:40854638:40860292:1 gene:Zm00001d035679 transcript:Zm00001d035679_T017 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pumilio homolog 3
Sequence

MDRQTASHNSSESLCSSGIQYGLNRGPGTIGGLHSSNSLRSLDEIPNNDLPSNTFASLLG
SSLSRSASPDPELVRRAPSPSLPPIGVKVGNTDKMNGGSSSFRRSSSAIGGSDDLVAALS
GMNLSSRAMSGQTMDQSQLYQDVDNVQKFLFDRQGDQPNGNQQHYMRRPEHGQSKLSDGY
SANLANSSTMRNQINSGSFTSFDSLSLGSGFPSPRIGSRSPGGTVSSRQNLAGMSNMLNY
NGIGSPTASPSLQTSIDPAYIQYLAQIAATWDDPLMDRSHLGSSYMDLLGTQKANLGPLL
QSQKQYGYCGNLGFNLGGYAGSPLTSPVLPSSPIAPGSPLRHGDRNMRFPPGMRNFGNSF
GSWNSGMSGKMDANLMPSLLEEFKSNKSKSYELSEIAGHVVEFSADQYGSRFIQQKLETA
STEEKDMVFSEIMPQALTLMTDVFGNYVVQKFFEHGSTAQIKELAGQLIGRVLALSLQMY
GCRVIQKAIEVVDLDLQTKMVAELEGHVMRCVRDQNGNHVIQKCIECIPQHAIEFIVSTF
YGQVVMLSTHPYGCRVIQRVLEHCDDPKTQQIMMDEILQSVCLLAQDQYGNYVVQHVLEH
GKPHERSAIIEKLIGQVVQMSQQKFASNVIEKCLAFGNPVERQVLIGEMLGSTSESEPLE
VMMKDQFANYVVQKVLETCDDQQREMILTRIKTHLNTLKKYTYGKHIVARVEKLVAAGEK
RLGLQPACTAA

Transcript Sequence

Transcript ID

Zm00001d035679_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:40854638:40860292:1 gene:Zm00001d035679 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pumilio homolog 3
Sequence

AGGAGGATTCGTATCAGCGTGATATGGATAGGCAGACTGCCAGCCACAATAGTAGTGAAT
CATTATGTTCTTCTGGAATACAGTATGGTCTAAATCGTGGACCTGGAACTATTGGAGGCC
TGCACTCTAGCAATAGTTTACGAAGCTTGGATGAAATTCCGAACAATGATCTGCCATCAA
ATACATTTGCTTCTCTTTTAGGGTCATCTCTTTCTAGGAGTGCATCTCCAGATCCTGAGC
TTGTGAGGAGGGCCCCTAGTCCATCCCTTCCTCCAATCGGTGTGAAAGTTGGCAACACTG
ATAAGATGAATGGTGGTTCCTCTTCTTTCCGTCGTAGTTCATCCGCAATCGGTGGATCTG
ATGATCTGGTGGCTGCCTTATCTGGGATGAACTTATCATCTAGGGCAATGAGTGGGCAAA
CTATGGACCAGTCTCAGCTCTATCAGGATGTTGATAACGTCCAGAAGTTTCTTTTTGATC
GACAGGGTGACCAACCAAATGGCAATCAGCAGCACTACATGAGGCGTCCTGAGCATGGAC
AATCTAAGTTATCTGATGGATATTCTGCCAATTTGGCCAATTCATCCACGATGAGAAACC
AGATTAATTCTGGCAGTTTCACATCTTTTGACAGTTTGTCTCTTGGATCTGGCTTTCCTT
CCCCTAGGATTGGTTCTAGATCCCCTGGAGGGACTGTATCTTCTCGACAAAATTTAGCTG
GTATGTCTAACATGCTAAACTATAATGGAATTGGAAGTCCAACTGCGTCACCTTCTCTTC
AGACTTCTATTGATCCAGCGTATATCCAGTACCTTGCTCAAATTGCAGCTACCTGGGATG
ATCCTCTAATGGACAGGAGCCATCTGGGAAGTTCTTACATGGACTTACTTGGTACACAGA
AAGCTAACCTTGGCCCTTTACTTCAGTCACAAAAGCAATATGGTTACTGTGGCAATCTTG
GATTTAACCTTGGTGGTTATGCTGGAAGTCCATTGACAAGTCCTGTTCTTCCCTCTTCAC
CTATTGCACCAGGCAGTCCACTTAGGCATGGTGACCGCAACATGCGCTTTCCACCAGGCA
TGAGAAACTTCGGTAATTCCTTTGGTTCATGGAATTCAGGCATGAGTGGAAAGATGGATG
CTAATTTGATGCCCTCTCTCCTGGAGGAATTCAAGAGCAACAAAAGTAAATCATATGAGC
TCTCCGAAATAGCTGGCCATGTTGTTGAGTTTAGTGCTGATCAATATGGAAGCCGGTTCA
TACAACAGAAGCTAGAAACAGCCAGTACTGAAGAAAAGGACATGGTTTTTTCAGAAATTA
TGCCTCAAGCTCTCACATTAATGACTGATGTATTTGGAAATTATGTTGTCCAAAAGTTTT
TTGAGCATGGAAGCACTGCCCAGATAAAGGAATTGGCTGGTCAGCTTATTGGACGTGTCC
TTGCTCTTAGTCTTCAGATGTATGGGTGCCGGGTTATACAGAAGGCTATAGAAGTTGTTG
ATTTGGATCTGCAGACTAAAATGGTTGCGGAGCTGGAGGGTCATGTCATGCGCTGTGTAC
GTGATCAAAATGGGAACCATGTTATACAGAAATGCATAGAGTGCATTCCTCAGCATGCTA
TCGAGTTCATTGTCTCGACATTCTATGGCCAAGTTGTAATGTTATCCACTCATCCATATG
GTTGCCGAGTTATTCAGAGGGTTCTAGAGCATTGTGATGATCCTAAGACACAGCAAATAA
TGATGGATGAGATTCTCCAGTCTGTTTGCTTGCTAGCTCAGGACCAGTATGGCAACTATG
TGGTTCAGCATGTTCTGGAACATGGCAAGCCCCATGAGAGATCAGCCATTATTGAGAAGC
TAATTGGCCAAGTTGTGCAAATGAGCCAGCAAAAGTTTGCCTCTAATGTCATTGAGAAGT
GCTTAGCCTTTGGAAATCCTGTAGAACGTCAGGTTCTGATCGGTGAGATGCTTGGATCCA
CTAGCGAAAGCGAACCTCTTGAGGTAATGATGAAAGACCAGTTCGCAAACTATGTGGTGC
AGAAGGTGCTAGAAACTTGTGACGATCAGCAGAGGGAGATGATCTTAACAAGGATAAAGA
CACACTTGAACACACTCAAGAAGTACACATACGGGAAGCACATAGTAGCGCGTGTAGAGA
AGCTTGTTGCTGCTGGAGAGAAGCGCCTTGGGCTTCAACCAGCATGCACCGCCGCCTGAA
GGGCAAACTCTCTAAGTTGTACAGCTAACAGTTGCTAGGTTTGCCTCATGTTTTTTTCTC
TACTAAAAACCTTATATGAAGGCCCCTTTTGGCCTCGCCAGGAAAAAAAATAAATACTGT
ATGTTTGCGGGGAAGAGTGTACATTAATTCTGTAGCAGAAAGACCCCCTACCCATGTGGC
GGAATCAAGGGAGGAGTGATGCGTGTGAGTCCGATCGATCTGAAGGCTGCTGTAAAGAGG
AAGATGGAAGGGGAAGGAGTGAGAAGCATGTCAGTTACTCTGCTGCTGTACAAATTAAAC
TTAGCTCTTAGAGTGAGGAGAAAGTAAGCTGTTAGCTGTCTGCCTAAAGGAAAGAAAGGA
AAAAAAAAAGAAGCTGGAGGCCATTGGCACCCTGCTGTGGCTCTCCTGTTGTCTGTCTGG
CCTTTGTTGTAACATAAAGCTGAGGCGCACTAGCCTGCCTTCGTTTTCACAGTTAAGCTG
AAGTTATTAGTATCAGCTTTCCTGAACTGCTTGGTATGTAATCCAGGCCCCTAATGTCTG
AATGTTTTAATCTCATTTTTCACCTC