Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035666_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:6:40029522:40033645:-1 gene:Zm00001d035666 gene_biotype:protein_coding transcript_biotype:protein_coding description:Replication protein A 70 kDa DNA-binding subunit E
Sequence

ATGGAGCCGCAGCTGACGCCCGGCGCGGTGGCGGCGGTCTCCGCCCACGCCGACGGCAAC
GGCACGCTGCAGCCGGTGCTGCAGGTGGTGGACGTGCGGATGGTCAACAACGCCAAGAAC
CCCTCCGCCGAGCGCTTCCGGATGGTGCTCTCCGACGGCGAACACACCATGCAGTCCATG
CTCGCCACCGCCGAGAACGCGCGCGTCCGGGACGGCTCCATCCAGAAGGGCTCCATCGTC
CACCTCCTGGAGTGCACCTGCAGCACCATCCAGTCTCGCAGGATCATTATCGTTATCAAA
CTTGATGTTCTGCAAAGTGAGTGTGCCATAATTGGAAACCCCAGGCCCTATGAAATGAGA
AACCAACCTAATGAGCAGGGCACCAACATACCGGCCAATGCTGCTCAAGCTAATACTGGA
ACGTATTCCAGTGGCCCTGGTTTGCTGGGATCACCTGCTGCTTCAAGGCCAGCACAAGTT
GCTAATAATGTACCATACAGTGGATCCTATGGTGGTTATCATGGTACGGTGGTCCCTCCG
ATTGCCCCTGCAGTAGAATCTGTTCCCAATGTGGCATCGGGTGTCACTTATGGTACAACT
TCAGCGCATAATACAATGAATGCGGGCATGACACAGTCAAACTTGCAGCAGCGTTCACTG
AACTCTCACCCGAACCAAAGGTTTGCAGTTCCTTCCATGGCTGGTGGCAGTGGTGCTCCT
GGGAATACATATGGACAACCTGCACAGTCGTTTTATCAGCAACCGCCTCCAGGGCATATG
AATAGAACTCCTGTGTCTAAGAACGATGCATATCGTCTTGTCCCATTGGCTCAATTGAAC
CCTTATCTAGATAAATGGACAATCAAGGTCAGGGTAACTGCAAAGACTGATCTCAGGTTC
TACAACAATGCTAGAGGTGCTGGAAAAGTCTTTTCCTTTGATCTCCTTGATGAACAGCGT
GGAGAAATCCGTGCAACATGCTTCAATACGCAGGCTGATCAGTTTTTTAACCTCATTGAG
GTTGATAAGGTGTACCTGATATCTAAAGGGTCGTTGAAACCAGCACAGAAGAAGTTTAAC
TCCTTGAATCACGAGTATGAGATAAGTCTGGATTCCAGAACATCTATTGAAGTTTGTGCT
GATGATGATAGCAACATCCCTAGGCAGCAGTATAATTTCCGGAAGATAAGTGAAATTGAG
AACATTGAGAAAGATGCTATTTTGGACTTGATTGGAATTGTCACATCAGTTGGCCCTTCT
GTCACGTTTATCCGAAAGGATGGCGTGGAAACCCAGAGAAGAACACTTGAACTGAAAGAC
ATGTCTGGTCGAAGTGTACAACTTACCTTATGGGGGAAGTTGTGTGTTGCTGAAGGCAAC
CAGCTGCAGTCGCTGTGCGATTCTGGTTTGAATCCTGTTCTAGCTTTGAAAGGTGCCCGC
GTTACTGACTACAGTGGTAGATCTGTGTCCTCAGCTGGCTCAACTCAGTTAAAAATAGAC
CCAGAAATTCCTGAGGCTGAGAGTCTGCGGCGCTGGTACGCAACTGGAGGAAAGACAGCT
GCTTGTGTTTCTCTGTCAGTGGTAAGTATGGGTGGTACTTGTGTCCGGAAATCAATCGCT
CAGATCAAGGATGAAAATCTGGGGCAGTTAGAGAAGCCAGACTTTATCACTGTTAAAGCT
GCAATTTCACATCTGATAGCAGATAATTTTTGTTATCCTGCTTGCACCATTGACGTGAAT
GGTAGGATGTGCAACAAAAAGGTAACAGATAATGGTGATGGGACATGGCGTTGTGACAAA
TGCGACCAGAGCTTACCAAATTGTGAGTACAGATACGTGCTGAATGGCCAGATCCAGGAC
CACAGTGGGGTCACCAATTTTACTGCATTCGAAGATGCTGCTAAGGTGATGATTGGCCAC
AGTGGCCACGAGCTCAACAACATTAGTGTAGAAGACTCGGAACGATTTGCAGAGATCTTG
CAGGCGGCTCGTTGGCAGCAGTTTCTGTTCACGCTGAAAGTCAAGGAGGAGATCTATAAT
GATGCGCCGCAAGTCAAGTGCAACATTACTAAAGCAGAGAAGCTGGATCCGGCAATAGAG
AGTTCTTACCTTCTAGGGGTAATCAATGGCCTGTTGCAGGATGACACTGGCTCACCTTCT
GGGGCGCAAGGTGCCATGGCCTACAATGCTGGTATCAGCAACACTGGCGCTGGACGAAGT
GTGCCAACCTCCAACAGTGCCTACACCACCAATTTGAGTGGTCCAAGGTATGGCGAGTCT
GCAAACCAGCTCGCGCAGCAGGAAAGCACGTACACCGGGGTGACCACTCCAGTGTCGGCG
GCACGGAATGTGCAGCAGACCTGCGTGTCCTGCGGGTCAAGTGGGCACAACGTGCAGAAC
TGCCCTGCAGGAACATACAGGCAGCAGGCGGCTGCAAGCGCAGCAAGCTCCTACGGTACT
TCGCAGCCTCGCAATGGACTGTGCTTCAAATGCAATCAGCCTGGACACTTTGCCAACTCT
TGTCCACTACTGGCTCCTGCTCCCCAGCAGCAGCAGCAGTATCGGAGCGGCGGCGCTCCC
TCAGGCGGTTATGGTAGGCAGCAGCCCTATGTTGGGGCTACCAACTACTGA

Peptide Sequence

PEP ID

Zm00001d035666_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:6:40029522:40033645:-1 gene:Zm00001d035666 transcript:Zm00001d035666_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Replication protein A 70 kDa DNA-binding subunit E
Sequence

MEPQLTPGAVAAVSAHADGNGTLQPVLQVVDVRMVNNAKNPSAERFRMVLSDGEHTMQSM
LATAENARVRDGSIQKGSIVHLLECTCSTIQSRRIIIVIKLDVLQSECAIIGNPRPYEMR
NQPNEQGTNIPANAAQANTGTYSSGPGLLGSPAASRPAQVANNVPYSGSYGGYHGTVVPP
IAPAVESVPNVASGVTYGTTSAHNTMNAGMTQSNLQQRSLNSHPNQRFAVPSMAGGSGAP
GNTYGQPAQSFYQQPPPGHMNRTPVSKNDAYRLVPLAQLNPYLDKWTIKVRVTAKTDLRF
YNNARGAGKVFSFDLLDEQRGEIRATCFNTQADQFFNLIEVDKVYLISKGSLKPAQKKFN
SLNHEYEISLDSRTSIEVCADDDSNIPRQQYNFRKISEIENIEKDAILDLIGIVTSVGPS
VTFIRKDGVETQRRTLELKDMSGRSVQLTLWGKLCVAEGNQLQSLCDSGLNPVLALKGAR
VTDYSGRSVSSAGSTQLKIDPEIPEAESLRRWYATGGKTAACVSLSVVSMGGTCVRKSIA
QIKDENLGQLEKPDFITVKAAISHLIADNFCYPACTIDVNGRMCNKKVTDNGDGTWRCDK
CDQSLPNCEYRYVLNGQIQDHSGVTNFTAFEDAAKVMIGHSGHELNNISVEDSERFAEIL
QAARWQQFLFTLKVKEEIYNDAPQVKCNITKAEKLDPAIESSYLLGVINGLLQDDTGSPS
GAQGAMAYNAGISNTGAGRSVPTSNSAYTTNLSGPRYGESANQLAQQESTYTGVTTPVSA
ARNVQQTCVSCGSSGHNVQNCPAGTYRQQAAASAASSYGTSQPRNGLCFKCNQPGHFANS
CPLLAPAPQQQQQYRSGGAPSGGYGRQQPYVGATNY

Transcript Sequence

Transcript ID

Zm00001d035666_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:40029522:40033645:-1 gene:Zm00001d035666 gene_biotype:protein_coding transcript_biotype:protein_coding description:Replication protein A 70 kDa DNA-binding subunit E
Sequence

CCCACTCGCCGGAACCGCCGCCTCTCCAATCCCCGCTAACCCTCGCTCCGTTTTATCGCC
CCCCTCTGCTTCCAAATCGAATCGCGTCCTCTCCATTCTGCCGTCTCCTCTCCTACTCCT
CCCCCCTGCCGCCGCAAGATCCACCAGGGCTCTCGACCGCAATGGAGCCGCAGCTGACGC
CCGGCGCGGTGGCGGCGGTCTCCGCCCACGCCGACGGCAACGGCACGCTGCAGCCGGTGC
TGCAGGTGGTGGACGTGCGGATGGTCAACAACGCCAAGAACCCCTCCGCCGAGCGCTTCC
GGATGGTGCTCTCCGACGGCGAACACACCATGCAGTCCATGCTCGCCACCGCCGAGAACG
CGCGCGTCCGGGACGGCTCCATCCAGAAGGGCTCCATCGTCCACCTCCTGGAGTGCACCT
GCAGCACCATCCAGTCTCGCAGGATCATTATCGTTATCAAACTTGATGTTCTGCAAAGTG
AGTGTGCCATAATTGGAAACCCCAGGCCCTATGAAATGAGAAACCAACCTAATGAGCAGG
GCACCAACATACCGGCCAATGCTGCTCAAGCTAATACTGGAACGTATTCCAGTGGCCCTG
GTTTGCTGGGATCACCTGCTGCTTCAAGGCCAGCACAAGTTGCTAATAATGTACCATACA
GTGGATCCTATGGTGGTTATCATGGTACGGTGGTCCCTCCGATTGCCCCTGCAGTAGAAT
CTGTTCCCAATGTGGCATCGGGTGTCACTTATGGTACAACTTCAGCGCATAATACAATGA
ATGCGGGCATGACACAGTCAAACTTGCAGCAGCGTTCACTGAACTCTCACCCGAACCAAA
GGTTTGCAGTTCCTTCCATGGCTGGTGGCAGTGGTGCTCCTGGGAATACATATGGACAAC
CTGCACAGTCGTTTTATCAGCAACCGCCTCCAGGGCATATGAATAGAACTCCTGTGTCTA
AGAACGATGCATATCGTCTTGTCCCATTGGCTCAATTGAACCCTTATCTAGATAAATGGA
CAATCAAGGTCAGGGTAACTGCAAAGACTGATCTCAGGTTCTACAACAATGCTAGAGGTG
CTGGAAAAGTCTTTTCCTTTGATCTCCTTGATGAACAGCGTGGAGAAATCCGTGCAACAT
GCTTCAATACGCAGGCTGATCAGTTTTTTAACCTCATTGAGGTTGATAAGGTGTACCTGA
TATCTAAAGGGTCGTTGAAACCAGCACAGAAGAAGTTTAACTCCTTGAATCACGAGTATG
AGATAAGTCTGGATTCCAGAACATCTATTGAAGTTTGTGCTGATGATGATAGCAACATCC
CTAGGCAGCAGTATAATTTCCGGAAGATAAGTGAAATTGAGAACATTGAGAAAGATGCTA
TTTTGGACTTGATTGGAATTGTCACATCAGTTGGCCCTTCTGTCACGTTTATCCGAAAGG
ATGGCGTGGAAACCCAGAGAAGAACACTTGAACTGAAAGACATGTCTGGTCGAAGTGTAC
AACTTACCTTATGGGGGAAGTTGTGTGTTGCTGAAGGCAACCAGCTGCAGTCGCTGTGCG
ATTCTGGTTTGAATCCTGTTCTAGCTTTGAAAGGTGCCCGCGTTACTGACTACAGTGGTA
GATCTGTGTCCTCAGCTGGCTCAACTCAGTTAAAAATAGACCCAGAAATTCCTGAGGCTG
AGAGTCTGCGGCGCTGGTACGCAACTGGAGGAAAGACAGCTGCTTGTGTTTCTCTGTCAG
TGGTAAGTATGGGTGGTACTTGTGTCCGGAAATCAATCGCTCAGATCAAGGATGAAAATC
TGGGGCAGTTAGAGAAGCCAGACTTTATCACTGTTAAAGCTGCAATTTCACATCTGATAG
CAGATAATTTTTGTTATCCTGCTTGCACCATTGACGTGAATGGTAGGATGTGCAACAAAA
AGGTAACAGATAATGGTGATGGGACATGGCGTTGTGACAAATGCGACCAGAGCTTACCAA
ATTGTGAGTACAGATACGTGCTGAATGGCCAGATCCAGGACCACAGTGGGGTCACCAATT
TTACTGCATTCGAAGATGCTGCTAAGGTGATGATTGGCCACAGTGGCCACGAGCTCAACA
ACATTAGTGTAGAAGACTCGGAACGATTTGCAGAGATCTTGCAGGCGGCTCGTTGGCAGC
AGTTTCTGTTCACGCTGAAAGTCAAGGAGGAGATCTATAATGATGCGCCGCAAGTCAAGT
GCAACATTACTAAAGCAGAGAAGCTGGATCCGGCAATAGAGAGTTCTTACCTTCTAGGGG
TAATCAATGGCCTGTTGCAGGATGACACTGGCTCACCTTCTGGGGCGCAAGGTGCCATGG
CCTACAATGCTGGTATCAGCAACACTGGCGCTGGACGAAGTGTGCCAACCTCCAACAGTG
CCTACACCACCAATTTGAGTGGTCCAAGGTATGGCGAGTCTGCAAACCAGCTCGCGCAGC
AGGAAAGCACGTACACCGGGGTGACCACTCCAGTGTCGGCGGCACGGAATGTGCAGCAGA
CCTGCGTGTCCTGCGGGTCAAGTGGGCACAACGTGCAGAACTGCCCTGCAGGAACATACA
GGCAGCAGGCGGCTGCAAGCGCAGCAAGCTCCTACGGTACTTCGCAGCCTCGCAATGGAC
TGTGCTTCAAATGCAATCAGCCTGGACACTTTGCCAACTCTTGTCCACTACTGGCTCCTG
CTCCCCAGCAGCAGCAGCAGTATCGGAGCGGCGGCGCTCCCTCAGGCGGTTATGGTAGGC
AGCAGCCCTATGTTGGGGCTACCAACTACTGAAAGTCATTATCTCTGTCGAGTCAGTCGT
GATGTTGGTTTTGCTTAGATGCCTGTCCTGAATGGCATCGCTGCGTCCATGTGAAGTAGA
TGCAAACCATTCCTTTTTATGTTTGTGTGTGAAGTTAGAACTATGTATCAGTACTTTATG
TTTTCGTCTTATAAATCCTCGTTGCCGTGTCAGTTCTGTTGAATTCGTGGTTTGTCTCCC
TGAATAACTCACTGTATGGTGGGTGTAAATTAAATGAAAATCATTTATC