Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035574_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:6:34422763:34431461:-1 gene:Zm00001d035574 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 UFM1-protein ligase 1 homolog
Sequence

ATGGACGCGGAGCTTCTGGAGCTGCAGCGGCAGCTAGAGGCGGCGCAGAGCGCGAGGTCC
AGCGTGCGCCTGTCGGAGCGGAACGTGGTGGAGTTGGTGCGGAAGCTGCAGGAGCGAGGC
ATCATCGACTTCGACCTCCTCCACACCGTCTCCGGCAAGGAGTACATCACATCCGACCAT
TTGAAGCATGAGATTAAGATGGAGATCAAGAAGAGAGGCCGTGCATCTCTAGTTGACTTA
TCAGATACCCTGGGGGTGGACCTTTACCATGTTGAGAGGCAGTCACAGAAGGTCGTCTCC
GATGATCCCACTCTAATGCTGATAAATGGCGAGATCATGTCACAATCTTACTGGGACACC
GTGACGGAAGAGATAAATGAGAAGCTTCAGGAGCGCAGTCAGATTGCCTTGGCAGAGATT
GCTGCTCAGTTACATATTGGATCCGAGCTTGTCATCAGTATCCTCGAGCCGCGGCTTGGA
ACTATTGTGAAAGGAAGGCTAGAAGGCGGACAGCTATACACTCCAGCGTATGTCTCACGG
ATTACTGCTATGGTTCGTGGTGCTGCAAGGGGTATAACAGTGCCAACAAACCTGCCATCT
GTTTGGAACTCCTTGCAACAACAGCTTCATGAGATGCATGGTGCTAGTGGAGTTTCTGTG
GAAGGTTCATTCTTCCAATCCATTTTCAATGGTTTGCTAAAAGAAGGTGCTGTACTGGGA
TCAGTCCGTGCAGGAGGACAGTGGACACCAGCTGTTTTCGCCCATGCCCAAAAGGAGAGT
GTTGATGCTTTTTTCTCACAGAACTCTTACATTGGGTACGACGTGCTTCAGAAACTTGCA
ATTCCTCAACCTAAACAGTTCTTGGAGGCCCGATATCCAGATGGTATTGCATTGGATGCT
GTCTTTGTTCATACTTCTGTGGTTGATATGCTCGATACTGCGGTTGGTGATGCAATTGAG
AATGGACACTGGATTGATTCTCTTTCAGTTCTTCCATCATATATTAGTGGACCAGATGCA
ACCAAAATTTTATCTATCTGTCCATCTCTGCAGAAGGCTATCAAGTCTTCTAAAGCAGTG
GTATTTGGAGAGTCATGTGTCTTCAGTAACATGTTTATTAAGGGTATTTTTGACCGACTT
GAGAAAGATATGGACTCGTTTGGTATTAGACTTAGTGTTGGTCAAGGAAGACCTGTGAAT
ACGAATCTGGGTAGTGAGCACAAGACAGGGTCTGGTCAGCACTCGGACACAAAAGATCTT
GGTGGTAATGGCACTAGCAGTACCGGTGCTTCATCAGACAGAGGGTCAAAGAAGAAAAGG
GGGAAAGGGACAGGGTCTACCAAAGGTGGATCACTTGAAAAGGATGATGACAATGAAGAA
AGCATTCCTGTTAAGGGCAAGAAATCTCACAGGAAAAACAAGGATGCTGGTGCATCTGGT
GACATAAAACATGGTGGTAAAAAAACGTCAGAGAAAATGATAGAGGAGAATGCAAATATC
TTTCCTGATGAATTGATAGAAGAAAAGGTTTTGGCTGTTGCTCCAGAGTTAGAAGAGTTG
GGAGGCTCTGATGACTCAAATGCCCCCCTTAAATTGTTGTCTTCTCACCTGAGGCCAATG
CTTGTTGACTCATGGGCAAAGAAACGGAACACCATGCTGTCAGGAAATGCTGAAAGAAGG
CGACGCTTGCTCGATAATCTGCAGAAGCAGATAGATGAGGCTGTCCTGGAGATACAACTC
TATGAAAAAGCTTTGGATGTATTTGAGGAAGATCCTACTACTTCTGGTATACTACACAAG
CATCTTCTAAGAAGTATGGGCACTCCAATAGTTGACAAAGTTTTGATTACATTGAGGATA
AGGACAACAAATTGA

Peptide Sequence

PEP ID

Zm00001d035574_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:6:34422763:34431461:-1 gene:Zm00001d035574 transcript:Zm00001d035574_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 UFM1-protein ligase 1 homolog
Sequence

MDAELLELQRQLEAAQSARSSVRLSERNVVELVRKLQERGIIDFDLLHTVSGKEYITSDH
LKHEIKMEIKKRGRASLVDLSDTLGVDLYHVERQSQKVVSDDPTLMLINGEIMSQSYWDT
VTEEINEKLQERSQIALAEIAAQLHIGSELVISILEPRLGTIVKGRLEGGQLYTPAYVSR
ITAMVRGAARGITVPTNLPSVWNSLQQQLHEMHGASGVSVEGSFFQSIFNGLLKEGAVLG
SVRAGGQWTPAVFAHAQKESVDAFFSQNSYIGYDVLQKLAIPQPKQFLEARYPDGIALDA
VFVHTSVVDMLDTAVGDAIENGHWIDSLSVLPSYISGPDATKILSICPSLQKAIKSSKAV
VFGESCVFSNMFIKGIFDRLEKDMDSFGIRLSVGQGRPVNTNLGSEHKTGSGQHSDTKDL
GGNGTSSTGASSDRGSKKKRGKGTGSTKGGSLEKDDDNEESIPVKGKKSHRKNKDAGASG
DIKHGGKKTSEKMIEENANIFPDELIEEKVLAVAPELEELGGSDDSNAPLKLLSSHLRPM
LVDSWAKKRNTMLSGNAERRRRLLDNLQKQIDEAVLEIQLYEKALDVFEEDPTTSGILHK
HLLRSMGTPIVDKVLITLRIRTTN

Transcript Sequence

Transcript ID

Zm00001d035574_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:34422763:34431461:-1 gene:Zm00001d035574 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 UFM1-protein ligase 1 homolog
Sequence

GGGCCCCACCTGCCAGTGAAAACTTCTCCCCCGCAGTTCCATCTCTCCGTCGCCGTCGTC
GTCGCGTCCTCCGCGTCTCCGGCGAGTCTAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGG
AGGGTGGAGGGCCGCGCCCATGGACGCGGAGCTTCTGGAGCTGCAGCGGCAGCTAGAGGC
GGCGCAGAGCGCGAGGTCCAGCGTGCGCCTGTCGGAGCGGAACGTGGTGGAGTTGGTGCG
GAAGCTGCAGGAGCGAGGCATCATCGACTTCGACCTCCTCCACACCGTCTCCGGCAAGGA
GTACATCACATCCGACCATTTGAAGCATGAGATTAAGATGGAGATCAAGAAGAGAGGCCG
TGCATCTCTAGTTGACTTATCAGATACCCTGGGGGTGGACCTTTACCATGTTGAGAGGCA
GTCACAGAAGGTCGTCTCCGATGATCCCACTCTAATGCTGATAAATGGCGAGATCATGTC
ACAATCTTACTGGGACACCGTGACGGAAGAGATAAATGAGAAGCTTCAGGAGCGCAGTCA
GATTGCCTTGGCAGAGATTGCTGCTCAGTTACATATTGGATCCGAGCTTGTCATCAGTAT
CCTCGAGCCGCGGCTTGGAACTATTGTGAAAGGAAGGCTAGAAGGCGGACAGCTATACAC
TCCAGCGTATGTCTCACGGATTACTGCTATGGTTCGTGGTGCTGCAAGGGGTATAACAGT
GCCAACAAACCTGCCATCTGTTTGGAACTCCTTGCAACAACAGCTTCATGAGATGCATGG
TGCTAGTGGAGTTTCTGTGGAAGGTTCATTCTTCCAATCCATTTTCAATGGTTTGCTAAA
AGAAGGTGCTGTACTGGGATCAGTCCGTGCAGGAGGACAGTGGACACCAGCTGTTTTCGC
CCATGCCCAAAAGGAGAGTGTTGATGCTTTTTTCTCACAGAACTCTTACATTGGGTACGA
CGTGCTTCAGAAACTTGCAATTCCTCAACCTAAACAGTTCTTGGAGGCCCGATATCCAGA
TGGTATTGCATTGGATGCTGTCTTTGTTCATACTTCTGTGGTTGATATGCTCGATACTGC
GGTTGGTGATGCAATTGAGAATGGACACTGGATTGATTCTCTTTCAGTTCTTCCATCATA
TATTAGTGGACCAGATGCAACCAAAATTTTATCTATCTGTCCATCTCTGCAGAAGGCTAT
CAAGTCTTCTAAAGCAGTGGTATTTGGAGAGTCATGTGTCTTCAGTAACATGTTTATTAA
GGGTATTTTTGACCGACTTGAGAAAGATATGGACTCGTTTGGTATTAGACTTAGTGTTGG
TCAAGGAAGACCTGTGAATACGAATCTGGGTAGTGAGCACAAGACAGGGTCTGGTCAGCA
CTCGGACACAAAAGATCTTGGTGGTAATGGCACTAGCAGTACCGGTGCTTCATCAGACAG
AGGGTCAAAGAAGAAAAGGGGGAAAGGGACAGGGTCTACCAAAGGTGGATCACTTGAAAA
GGATGATGACAATGAAGAAAGCATTCCTGTTAAGGGCAAGAAATCTCACAGGAAAAACAA
GGATGCTGGTGCATCTGGTGACATAAAACATGGTGGTAAAAAAACGTCAGAGAAAATGAT
AGAGGAGAATGCAAATATCTTTCCTGATGAATTGATAGAAGAAAAGGTTTTGGCTGTTGC
TCCAGAGTTAGAAGAGTTGGGAGGCTCTGATGACTCAAATGCCCCCCTTAAATTGTTGTC
TTCTCACCTGAGGCCAATGCTTGTTGACTCATGGGCAAAGAAACGGAACACCATGCTGTC
AGGAAATGCTGAAAGAAGGCGACGCTTGCTCGATAATCTGCAGAAGCAGATAGATGAGGC
TGTCCTGGAGATACAACTCTATGAAAAAGCTTTGGATGTATTTGAGGAAGATCCTACTAC
TTCTGGTATACTACACAAGCATCTTCTAAGAAGTATGGGCACTCCAATAGTTGACAAAGT
TTTGATTACATTGAGGATAAGGACAACAAATTGAAGAATGGAATGGAGGTTGAGGATAGC
GAAGATCATGTCCAATTGAGCACTGCTGACCGAAGCTCTCTGGCCAAGGATCTTCCTAGT
GCATTGTCATTGAAGGCTCAAGCTTTAATTGAAGCATTAGAGGGAAAGAGGTTTGATTCA
TTTATGGATGCCTTAAGAGATATACTGGAGGAAAGTGGCTTGACATTTAAGAAGCTTGAT
AAAAGGTTAGAGAGGACAATGCTGCATTCCTATCGCAAGGTATGTTGTTTGCTTTCTGAA
CTGCACAACAGGGTTCATAGAACTGGTTTGAACCGGTTGGTTCCTTGTAACCAGTCCCAG
AACAGGTTTCCAAATTTTAGCCAGATCATTCCCTAAATCACATCCATCCTATTTGATATG
CCAATTTATTAGATAGGCATATGACTCAAAATTAATCATGAAAAGCTCAAATGGAAAGTT
AAGCAAACTTTGGGAAAGCTGGGACCTTTCTTTTAGGGTTTTGGAAACTGATATATTGTA
CTACCTCCGTTCTCGAATATTTGTCACCCGTTAGTTCATTTTTGAACTAAAACGCGACAA
ATAAAAAAGAACGGAGGGAGTAGTTCTTTTTTTTTGTTCCCTCTTTGTTTGGATTTTTTT
TTGTATTTGGCTGAATCATAGTTTGCTAAATACCTATCAGTCATATGGTGGTATTTGTTA
CATTTAAAAAAAACTTGGCCGGGGAGGGAAAGCCCCCCCCCCCCCCCCCGATTATATTAA
GAAGAGACCGAAACATGGTCCCGGTCGAGAAAATACCCGAACCCTGGCCCCCCATCACTA
GCGGGTCGTCACCGCCCGCTCTGCAACGACCCAGTCGGAGGGTGGCGCACATGACTGTTA
GAATATAATATAAGTGAATTGACCACCTTCTCCTATCAGTTTAAGCTTTTGGGTTGAATT
GGTTGATGCATGCAACTTAATATGGTATCAGATCCAGAGGTCACGAGTTCGAATCCTGGT
TAGCGCAATTAAAATAAAATAATTGTTACTCGCTCATATTCCACGTCTGAGACCCAAGAG
AGGCTCGAGGTGATGAGGAGTGTTAGAATATAATATAAGCGAATTGACCACTTCCTCCTA
TCAGCTTAAGTTTTTAGGTTGGATTGACTGGTACATGCAACTTAATAAGGACGTAACCCG
GGAGCGGGCGGGGCACAACAAGTGGATTTTTTTTAACAAAGCCCGAAATTCGCCCCCGAG
GGGATCGAACCTAGGACCTGGAGGCGGTACTCGAAAATCTTAACTATTACGCTAGAGACC
CTTTCACGATATTTGTTACATATCAGTATATCAGTGATATTTTTGTATCTCCGTCACTCC
GTGTGCTACAATGCTGCTTATGTATTTAGCTTGGAAATGGTGCAGTGCAAACACAAGTAC
CAGAACACATGTCAAAATTTTTATGATCATATTACATAAGTTATTAGATTGATACGATGA
TGTTTAGAGTTTAGACTGCTCAAGGTATTGTGTGTGGGAAAAAGTTGATTTCAATTTCCA
ATATAGTATACAGTGTACTGAACAATGAATTTGTTATTTGCCTGGCGCCCTGGCATGCTA
ATTGCTTTTATGCCTAAACCGTCTATTGCTAATTATTTGACACTTCAATATATGTGAATG
AAGGATTTGACAGCACAAGTTTCATCAGAGAATGATCCTGTTGCCTTTCTTCCAAAAGTC
GTTGCTTTACTTTTCCTGCAGGCATATAATAAGGCTATTCAGGCACCAGGAAGAGCTGTT
GGTGCTGTTATCACACTGCTGAAGGATAAGCTGCCAGCTGCAACCTACAAGGTATTGACT
GATTATCACAGCACTACTGTGAAACTTTTAGCACTACAAGCTGCTGCTACTGACGATGTA
AGT