Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035162_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:7402215:7405017:1 gene:Zm00001d035162 gene_biotype:protein_coding transcript_biotype:protein_coding description:LHT1

Sequence

ATGGCGGCAGTCCAGCCGTCCGTGGAGATGACGACGCAGCAAGGGCCGCCAGCCGCCAGC
TATTCTCCGGCCAGGGATGGCGGCGGCGGCAGGAGCGCCGAGGATGAGGAGAAGGAGAAG
GCGGCGGCGATCGACAACTGGCTTCCCATCAGCGCGACGCGGAATGCCAAGTGGTGGTAC
TCCGCCTTCCACAACGTCACGGCCATGGTCGGCGCCGGCGTGCTCGGCCTCCCCTACGCC
ATGTCCCAGCTCGGCTGGGGTGCCGGCATCACGATCATGCTCCTGTCGTGGGTGATCACG
CTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGATGGTGCCGGGGAAGCGGTTCGAC
CGGTACCACGAGCTGGGGCAGCACGCGTTCGGGGACCGGCTGGGCCTGTGGATCGTGGTG
CCGCAGCAGCTGGTGGTGGAGGTGGGGGTGAACATCGTGTACATGGTGACCGGCGGCACG
TCGCTGCAGAAGTTCCACGACGTGCTGGTGTGCGGCGACGCGGCGTGCGAGGGCGGGCGC
AAGATCAGGCTCACCTACTTCATCATGATCTTCGCGTCCTGCCACTTCGTGCTGGCGCAG
CTGCCCAACTTCGACTCCATCTCCGGCGTGTCCCTGGCCGCCGCCGTCATGTCGCTCAGC
TACTCGACCATCGCGTGGGGCGCGTCCGTCAGCAAAGGGCGGGTGCCCGACGTGGACTAC
GGACTCAGGGCCACCACGCCGCCGGGCAAGGTGTTCGGGTTCCTGGGCGCGCTCGGGACC
GTGGCGTTCGCCTACGCGGGCCACAACGTGGTGCTGGAGATCCAGGCCACCATCCCGTCC
ACTCCCGAGAAGCCGTCCAAGAAGCCCATGTGGAAGGGCGTCGTCGTCGCCTACCTCGTC
GTCGCGCTCTGCTACTTCCCCGTCTCGTTCGTCGGCTACTGGGCTTTCGGCGATAGCGTC
GACGGCGACATCCTCGTCACCCTTAACAGACCCAGGTGGCTCATCGCCCTCGCCAACATG
ATGGTCGTCATCCATGTCATTGGCAGCTACCAGATCTATGCGATGCCCGTGTTCGACATG
ATAGAGACGGTGCTGGTGAAGAAGCTGCGCTTCCCTCCAGGCCTCACGCTCCGTCTCATT
GCCCGTACTGTCTACGTTGCGTTCACAATGTTCATAGCCATCACGTTTCCCTTCTTCGAC
GGGCTGCTCAGCTTCTTCGGCGGATTCGCGTTCGCGCCCACAACCTATTTCCTTCCATGC
ATCATGTGGCTCGCAATCTACAAGCCCAAACGGTTCAGCCTCTCATGGTTCACCAACTGG
ATCTGCATCATCCTTGGAGTGCTTCTGATGGTGCTGGCGCCGATTGGAGGGCTCCGGCAG
ATCATTATCAGCGCCAAGACATACAAGTTCTACCAGTAA

Peptide Sequence

PEP ID

Zm00001d035162_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:7402215:7405017:1 gene:Zm00001d035162 transcript:Zm00001d035162_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:LHT1

Sequence

MAAVQPSVEMTTQQGPPAASYSPARDGGGGRSAEDEEKEKAAAIDNWLPISATRNAKWWY
SAFHNVTAMVGAGVLGLPYAMSQLGWGAGITIMLLSWVITLYTLWQMVEMHEMVPGKRFD
RYHELGQHAFGDRLGLWIVVPQQLVVEVGVNIVYMVTGGTSLQKFHDVLVCGDAACEGGR
KIRLTYFIMIFASCHFVLAQLPNFDSISGVSLAAAVMSLSYSTIAWGASVSKGRVPDVDY
GLRATTPPGKVFGFLGALGTVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYLV
VALCYFPVSFVGYWAFGDSVDGDILVTLNRPRWLIALANMMVVIHVIGSYQIYAMPVFDM
IETVLVKKLRFPPGLTLRLIARTVYVAFTMFIAITFPFFDGLLSFFGGFAFAPTTYFLPC
IMWLAIYKPKRFSLSWFTNWICIILGVLLMVLAPIGGLRQIIISAKTYKFYQ

Transcript Sequence

Transcript ID

Zm00001d035162_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:7402215:7405017:1 gene:Zm00001d035162 gene_biotype:protein_coding transcript_biotype:protein_coding description:LHT1

Sequence

ACTATGACCCCTGCTGCCTTTCCACCTTCCTCGATCTCCCTAGCTCGCTCTCCAATCTCC
CATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCTTCGCCATCCACCATCCATCC
CGTTCGTCGTGATAGATGGCGGCAGTCCAGCCGTCCGTGGAGATGACGACGCAGCAAGGG
CCGCCAGCCGCCAGCTATTCTCCGGCCAGGGATGGCGGCGGCGGCAGGAGCGCCGAGGAT
GAGGAGAAGGAGAAGGCGGCGGCGATCGACAACTGGCTTCCCATCAGCGCGACGCGGAAT
GCCAAGTGGTGGTACTCCGCCTTCCACAACGTCACGGCCATGGTCGGCGCCGGCGTGCTC
GGCCTCCCCTACGCCATGTCCCAGCTCGGCTGGGGTGCCGGCATCACGATCATGCTCCTG
TCGTGGGTGATCACGCTGTACACGCTGTGGCAGATGGTGGAGATGCACGAGATGGTGCCG
GGGAAGCGGTTCGACCGGTACCACGAGCTGGGGCAGCACGCGTTCGGGGACCGGCTGGGC
CTGTGGATCGTGGTGCCGCAGCAGCTGGTGGTGGAGGTGGGGGTGAACATCGTGTACATG
GTGACCGGCGGCACGTCGCTGCAGAAGTTCCACGACGTGCTGGTGTGCGGCGACGCGGCG
TGCGAGGGCGGGCGCAAGATCAGGCTCACCTACTTCATCATGATCTTCGCGTCCTGCCAC
TTCGTGCTGGCGCAGCTGCCCAACTTCGACTCCATCTCCGGCGTGTCCCTGGCCGCCGCC
GTCATGTCGCTCAGCTACTCGACCATCGCGTGGGGCGCGTCCGTCAGCAAAGGGCGGGTG
CCCGACGTGGACTACGGACTCAGGGCCACCACGCCGCCGGGCAAGGTGTTCGGGTTCCTG
GGCGCGCTCGGGACCGTGGCGTTCGCCTACGCGGGCCACAACGTGGTGCTGGAGATCCAG
GCCACCATCCCGTCCACTCCCGAGAAGCCGTCCAAGAAGCCCATGTGGAAGGGCGTCGTC
GTCGCCTACCTCGTCGTCGCGCTCTGCTACTTCCCCGTCTCGTTCGTCGGCTACTGGGCT
TTCGGCGATAGCGTCGACGGCGACATCCTCGTCACCCTTAACAGACCCAGGTGGCTCATC
GCCCTCGCCAACATGATGGTCGTCATCCATGTCATTGGCAGCTACCAGATCTATGCGATG
CCCGTGTTCGACATGATAGAGACGGTGCTGGTGAAGAAGCTGCGCTTCCCTCCAGGCCTC
ACGCTCCGTCTCATTGCCCGTACTGTCTACGTTGCGTTCACAATGTTCATAGCCATCACG
TTTCCCTTCTTCGACGGGCTGCTCAGCTTCTTCGGCGGATTCGCGTTCGCGCCCACAACC
TATTTCCTTCCATGCATCATGTGGCTCGCAATCTACAAGCCCAAACGGTTCAGCCTCTCA
TGGTTCACCAACTGGATCTGCATCATCCTTGGAGTGCTTCTGATGGTGCTGGCGCCGATT
GGAGGGCTCCGGCAGATCATTATCAGCGCCAAGACATACAAGTTCTACCAGTAAACATTG
CACAATTATCGTGCAAAAAACAACGCAAACCCCTTGCTTCACCAGTAACTGACAGACAAG
TCTTGTTAGGCCATATATACCATGTTACCATCAGCTGAACAGGTTCTGGATTTTGTTCCA
TGAGGGCTTCCAACTCCTTGTTTAATTTGGCACGACAAAAAACTCGCACCGGGTGCTCTA
ATCGGCGGTCGATTACAGCGTCCAGTGCGAGTTCTTTGCCGTGCCAAAATTGAAAGGAGG
TCGGCTCGGATGCCGGGGCATGCATACAGGACCTAGAACCCGTTTCGGTTGATGAGAATG
TTCCTGGCATGTAATGCTTCCCTTGTTGGTTGTGGTCTAACCTAGGAGTTTGCTTTGAGT
GGATCTTTGTACAATTGTACGTGTATATGATGTTTTTTTACATTATTCAGGGGAATTGGA
TCTTAGCTTCTGTGTGTGTATGCGTAAAAAGGGAAAGAGTTGTGCTTCATATATGTATAT
TTTTAGATGGCCTAAAATGTGTCGTATTTGTTGCATTTTTTTTTCTCCTACCACTTTTCA
TTCAATTAATCACGAAAAAAATACATTGATGATCATGCGTTGTTGTACTTGATGGATCTT
GATAAACAGTGGGTGCATTGGTACAGTTTAGATGCACGGTGAATATTTGGT