Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035016_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:1849044:1850408:-1 gene:Zm00001d035016 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence

ATGTCGTGGGCCGACCTCCCACTCGATGTGCTCGTGGACGGGGTGATCGCGCGGCTTCCT
ATCCCCGGCGACCGCGCCCGCTTGGCCGCCGTGTGCCGCGCATGGCGCGCCGCCGCGCGC
GAGGTGGTGAGCCACATCCAGCTCCCGTGGATCGTGCTCCCATACGGCACCGTCTGCACC
GCCGGCCGCGGCGCAGCCTGTTCGTCCTTCCGGATCCCCGGGTTCCCCGACGAGGCCACC
TGCCTCGGCGCCGCCCACGACGGCTGGCTCGCCCTGGACCGCACGGACGACGTGGTCGGG
CGCACGTCCTGGTTCCGGACGACATGGCCCGTCGTCGTCGGAGACACGTGGAAGCACGTC
ATGTTGGGCAAGTCCGACGTGAACCACAAGCACGCCTACGCGCTGCACAACCCCTTCAGC
GACGTCACCGTGCCGCTCCCGGAGCTGGACGCCGTCATCGGCCGTGTCGCCGAGACCTTC
CGGGTGCGTAAAGTGCTGATGCGTTCGCCGGCTCCAGATGACCTCGTCGCCGTCATGACC
AACAGCTGGAACTGCAACGTCATCTTGTGCCGCGCCGGGAAGGGTACGTTCGTGCTACCC
TACTACAGGATCGTCGACGTGGCGTTCCTTGGAGAAGACACGCTGTATGGAATCACCACC
GGCGAAGAACTCCTTGCCTTCCACCTCGGCGAGGATGACGACGGCAGACCTAATGTTGCC
AGGATTGAGCTGGTCATCAAAAACACGTTGGCCAATTATTATTATGATGAATTTGGATGG
TTGTGGCCAGCAGAAGTAGCTAGCACTAGTAGCAACAACGACGAGGATATGGATATGGAT
GACGATGATTATATGGAGGAGGATGATCCGGCAGTCGTCGATGATGGTGACGACGACCAA
GCTGATAGCTTCAACGGCGATGAGATGGTCTCGGACAGCGAGGTGTTTGATGGGTACGGC
GACGGCGAGGACCTTCAAGTCAAGGACGAGTTATATCTGGGTCGATACCTGGTGCGGTCG
CTGAGCGGAGAGCTGCTGCTCGTGAGGCACCAATGGCAATCATGCCCACGTTCCCCTTCC
TACACTCGCAAGGTCGAGTTCTTCAAGGCAGATTTTAGCGCCGGCAAATGGGCTGCCGCC
GGTGGATTAGCCAAGGGGGAGGCGATCTTTCTGAGTCCATCGCACAGCAAGTGCGTTCGC
GCAAGCGGAGGCGTCCGTGAAGGCTTTGTGTACTACACAAAACAGATGGACGACGTGTTC
GACACGAGATCGGGCACCGTTCGTGCCGCCATTACAGCTGGGTGGCCAGAACTATGCGCA
CTGGAGAAATCGGGATGGTTTTTCCCTCCGGAGCTAGTGGTTTGA

Peptide Sequence

PEP ID

Zm00001d035016_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:1849044:1850408:-1 gene:Zm00001d035016 transcript:Zm00001d035016_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence

MSWADLPLDVLVDGVIARLPIPGDRARLAAVCRAWRAAAREVVSHIQLPWIVLPYGTVCT
AGRGAACSSFRIPGFPDEATCLGAAHDGWLALDRTDDVVGRTSWFRTTWPVVVGDTWKHV
MLGKSDVNHKHAYALHNPFSDVTVPLPELDAVIGRVAETFRVRKVLMRSPAPDDLVAVMT
NSWNCNVILCRAGKGTFVLPYYRIVDVAFLGEDTLYGITTGEELLAFHLGEDDDGRPNVA
RIELVIKNTLANYYYDEFGWLWPAEVASTSSNNDEDMDMDDDDYMEEDDPAVVDDGDDDQ
ADSFNGDEMVSDSEVFDGYGDGEDLQVKDELYLGRYLVRSLSGELLLVRHQWQSCPRSPS
YTRKVEFFKADFSAGKWAAAGGLAKGEAIFLSPSHSKCVRASGGVREGFVYYTKQMDDVF
DTRSGTVRAAITAGWPELCALEKSGWFFPPELVV

Transcript Sequence

Transcript ID

Zm00001d035016_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:1849044:1850408:-1 gene:Zm00001d035016 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence

ATGTCGTGGGCCGACCTCCCACTCGATGTGCTCGTGGACGGGGTGATCGCGCGGCTTCCT
ATCCCCGGCGACCGCGCCCGCTTGGCCGCCGTGTGCCGCGCATGGCGCGCCGCCGCGCGC
GAGGTGGTGAGCCACATCCAGCTCCCGTGGATCGTGCTCCCATACGGCACCGTCTGCACC
GCCGGCCGCGGCGCAGCCTGTTCGTCCTTCCGGATCCCCGGGTTCCCCGACGAGGCCACC
TGCCTCGGCGCCGCCCACGACGGCTGGCTCGCCCTGGACCGCACGGACGACGTGGTCGGG
CGCACGTCCTGGTTCCGGACGACATGGCCCGTCGTCGTCGGAGACACGTGGAAGCACGTC
ATGTTGGGCAAGTCCGACGTGAACCACAAGCACGCCTACGCGCTGCACAACCCCTTCAGC
GACGTCACCGTGCCGCTCCCGGAGCTGGACGCCGTCATCGGCCGTGTCGCCGAGACCTTC
CGGGTGCGTAAAGTGCTGATGCGTTCGCCGGCTCCAGATGACCTCGTCGCCGTCATGACC
AACAGCTGGAACTGCAACGTCATCTTGTGCCGCGCCGGGAAGGGTACGTTCGTGCTACCC
TACTACAGGATCGTCGACGTGGCGTTCCTTGGAGAAGACACGCTGTATGGAATCACCACC
GGCGAAGAACTCCTTGCCTTCCACCTCGGCGAGGATGACGACGGCAGACCTAATGTTGCC
AGGATTGAGCTGGTCATCAAAAACACGTTGGCCAATTATTATTATGATGAATTTGGATGG
TTGTGGCCAGCAGAAGTAGCTAGCACTAGTAGCAACAACGACGAGGATATGGATATGGAT
GACGATGATTATATGGAGGAGGATGATCCGGCAGTCGTCGATGATGGTGACGACGACCAA
GCTGATAGCTTCAACGGCGATGAGATGGTCTCGGACAGCGAGGTGTTTGATGGGTACGGC
GACGGCGAGGACCTTCAAGTCAAGGACGAGTTATATCTGGGTCGATACCTGGTGCGGTCG
CTGAGCGGAGAGCTGCTGCTCGTGAGGCACCAATGGCAATCATGCCCACGTTCCCCTTCC
TACACTCGCAAGGTCGAGTTCTTCAAGGCAGATTTTAGCGCCGGCAAATGGGCTGCCGCC
GGTGGATTAGCCAAGGGGGAGGCGATCTTTCTGAGTCCATCGCACAGCAAGTGCGTTCGC
GCAAGCGGAGGCGTCCGTGAAGGCTTTGTGTACTACACAAAACAGATGGACGACGTGTTC
GACACGAGATCGGGCACCGTTCGTGCCGCCATTACAGCTGGGTGGCCAGAACTATGCGCA
CTGGAGAAATCGGGATGGTTTTTCCCTCCGGAGCTAGTGGTTTGA