Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d035008_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:6:1589579:1593451:-1 gene:Zm00001d035008 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 1 description:RING/FYVE/PHD-type zinc finger family protein
Sequence

ATGGCCTGCGACGGCGCCGCCAGAGGCCGCCCTCCCAAGCGCCCCGCTTCGGGAGGCCTG
GCCCAGCCCAACGTCGTCACCTACAAGAGACGCCGCCGCGGCACCGGCGCCAACGCCGGC
CACAGCGCCGTCACGTCTGGCCCCGACCCCGCTGAAATGAGCGCGGTGGTGCACGCCATC
GATTCCCAGCAAGGTGGGCGCCAAACGCTGGGCAGGCACTGGAGAAACTGGAGGGACACG
CTGGAGGGCGTCCTACAATCCACTGCTGGGAAGCAGGGCTCCGGAGGGATTCAGAGCTGC
ATCCGAGCTGCGCTCAGATTTAGTGGTTGCCCTCCCACAGAACATGGGAACTTAGCTCAC
GACGGAGGAGCAGGCAGAGATGACCCTGTTGGAGCTGTACATTCTGAAGAGAATAGTGGT
GCCTTGGTTCAGTTAGAAGACGGAACAGCTGCACCTTTGGAAGCCAACAAAACGATGTGC
CATAATGCTCTCTTTGACATTCTGATCTCCGAGAAGTTTGCGATGCTGTGTGATCTGCTA
GCTGCAACATTCCATGTCAGTAAGCCTGACGATGTGATTGGTTTGCAAATAATTGATGCC
AAGATGAGAAATGGGGATTATGCACAGAACCATGCGCTGCTTGACCATGATATCAAGCAG
ATATGGAAGAAGTTTGAACACGTTGGCCAAGAAATGGCTGGTCTGGCAAGCAGTCTCTCA
GTGATTTCACAAGCTTCTCACCAAAAGCAGGCTTCTGGTGTTTCAGAAATTGATGTGGCT
GAACACAAGATAGAAGAAACAAGCCTGGTTGGTGTTGCCCGCAAAGCCCTAAGGGAGTTG
ACTCCCCAGTGCGATTCTGGCTATTCTACGATACCAAAACGAGCTGGGAGGTCTGGATCG
GATGGAATTTGCAAGGATTGTGGCAGAAAGGCAGACAGCAAAGGAAGAATTATCTGTGAC
AGATGTGAAGCTGCGTACCATGTTTCGTGTCTGAAGCTTGCCATCGATGAAGAGGCCCCA
GCAAAATGGTACTGTCCCAGCTGCGTTGAGCCAGACGTAGCTTTGAAGCATAAAAACCAT
GGCAGGTCACATGAAGGCTGTGATGTATGCGAGTGGCTCGTGGTGAAGCCAGAAGAGCCT
GCTGAAGATGTTAGCGAGCCTGAACTGGCGGTCAAAACGCAGGAGAGCTCAGTGTCAAGC
ATGGGCGAAGACAGCGAACCAGACCTCTCAACGACTGCTCTAGCGAACTTGTGCAAGAAC
TGTGGCACATGCGAAGACGAGGACAGGAAGTTCATGGTATGCGGGCATGGTTTATGTTCT
TTCAAGTTCTACCATGTCCTGTGCCTGAAAGAGAGACAGATTGCAAGCGAGAAGCAGAAG
AATCTAAAGTGCTGGTACTGCCCGTCTTGCCTGTGCAGACGGTGCTTCAAGGACAAGGAT
GATGAGAAAATAGTACTGTGCGATGGCTGCGACGAGGCTTATCACATCTACTGCATGGAC
CCGCCGTGCGAGTCTGTCCCGAGAGGTAAATGGTTCTGCACGCGGTGTAGCGCGCGGAGG
TCAGTGCAAGGGATGCAGAGGTATGAGAAGTCGATCCTGGAGAAAGTCAAGCGTGCTCCT
GGTGCCAATGGGCCGAAGGTGCAGGCATCTGCTGGTCCAGAAAAATAG

Peptide Sequence

PEP ID

Zm00001d035008_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:6:1589579:1593451:-1 gene:Zm00001d035008 transcript:Zm00001d035008_T006 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 1 description:RING/FYVE/PHD-type zinc finger family protein
Sequence

MACDGAARGRPPKRPASGGLAQPNVVTYKRRRRGTGANAGHSAVTSGPDPAEMSAVVHAI
DSQQGGRQTLGRHWRNWRDTLEGVLQSTAGKQGSGGIQSCIRAALRFSGCPPTEHGNLAH
DGGAGRDDPVGAVHSEENSGALVQLEDGTAAPLEANKTMCHNALFDILISEKFAMLCDLL
AATFHVSKPDDVIGLQIIDAKMRNGDYAQNHALLDHDIKQIWKKFEHVGQEMAGLASSLS
VISQASHQKQASGVSEIDVAEHKIEETSLVGVARKALRELTPQCDSGYSTIPKRAGRSGS
DGICKDCGRKADSKGRIICDRCEAAYHVSCLKLAIDEEAPAKWYCPSCVEPDVALKHKNH
GRSHEGCDVCEWLVVKPEEPAEDVSEPELAVKTQESSVSSMGEDSEPDLSTTALANLCKN
CGTCEDEDRKFMVCGHGLCSFKFYHVLCLKERQIASEKQKNLKCWYCPSCLCRRCFKDKD
DEKIVLCDGCDEAYHIYCMDPPCESVPRGKWFCTRCSARRSVQGMQRYEKSILEKVKRAP
GANGPKVQASAGPEK

Transcript Sequence

Transcript ID

Zm00001d035008_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:1589579:1593451:-1 gene:Zm00001d035008 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 1 description:RING/FYVE/PHD-type zinc finger family protein
Sequence

GCTGGTTTCCCCCGCTCCTCCAATTTGGACAGCCGCTTCGGCTTCGCTTCATCCTCCCCC
CCCCTCTTCTCCTCCTCTGACCATCTCCTCCTCCTCGCGCTTCGCCTTCCCAATCTCGCT
GCCGTTTCTTGGGCCTGGGACTCGCGCTCTGCTATCTGTGTCCGCGTATGGCCTGCGACG
GCGCCGCCAGAGGCCGCCCTCCCAAGCGCCCCGCTTCGGGAGGCCTGGCCCAGCCCAACG
TCGTCACCTACAAGAGACGCCGCCGCGGCACCGGCGCCAACGCCGGCCACAGCGCCGTCA
CGTCTGGCCCCGACCCCGCTGAAATGAGCGCGGTGGTGCACGCCATCGATTCCCAGCAAG
GTGGGCGCCAAACGCTGGGCAGGCACTGGAGAAACTGGAGGGACACGCTGGAGGGCGTCC
TACAATCCACTGCTGGGAAGCAGGGCTCCGGAGGGATTCAGAGCTGCATCCGAGCTGCGC
TCAGATTTAGTGGTTGCCCTCCCACAGAACATGGGAACTTAGCTCACGACGGAGGAGCAG
GCAGAGATGACCCTGTTGGAGCTGTACATTCTGAAGAGAATAGTGGTGCCTTGGTTCAGT
TAGAAGACGGAACAGCTGCACCTTTGGAAGCCAACAAAACGATGTGCCATAATGCTCTCT
TTGACATTCTGATCTCCGAGAAGTTTGCGATGCTGTGTGATCTGCTAGCTGCAACATTCC
ATGTCAGTAAGCCTGACGATGTGATTGGTTTGCAAATAATTGATGCCAAGATGAGAAATG
GGGATTATGCACAGAACCATGCGCTGCTTGACCATGATATCAAGCAGATATGGAAGAAGT
TTGAACACGTTGGCCAAGAAATGGCTGGTCTGGCAAGCAGTCTCTCAGTGATTTCACAAG
CTTCTCACCAAAAGCAGGCTTCTGGTGTTTCAGAAATTGATGTGGCTGAACACAAGATAG
AAGAAACAAGCCTGGTTGGTGTTGCCCGCAAAGCCCTAAGGGAGTTGACTCCCCAGTGCG
ATTCTGGCTATTCTACGATACCAAAACGAGCTGGGAGGTCTGGATCGGATGGAATTTGCA
AGGATTGTGGCAGAAAGGCAGACAGCAAAGGAAGAATTATCTGTGACAGATGTGAAGCTG
CGTACCATGTTTCGTGTCTGAAGCTTGCCATCGATGAAGAGGCCCCAGCAAAATGGTACT
GTCCCAGCTGCGTTGAGCCAGACGTAGCTTTGAAGCATAAAAACCATGGCAGGTCACATG
AAGGCTGTGATGTATGCGAGTGGCTCGTGGTGAAGCCAGAAGAGCCTGCTGAAGATGTTA
GCGAGCCTGAACTGGCGGTCAAAACGCAGGAGAGCTCAGTGTCAAGCATGGGCGAAGACA
GCGAACCAGACCTCTCAACGACTGCTCTAGCGAACTTGTGCAAGAACTGTGGCACATGCG
AAGACGAGGACAGGAAGTTCATGGTATGCGGGCATGGTTTATGTTCTTTCAAGTTCTACC
ATGTCCTGTGCCTGAAAGAGAGACAGATTGCAAGCGAGAAGCAGAAGAATCTAAAGTGCT
GGTACTGCCCGTCTTGCCTGTGCAGACGGTGCTTCAAGGACAAGGATGATGAGAAAATAG
TACTGTGCGATGGCTGCGACGAGGCTTATCACATCTACTGCATGGACCCGCCGTGCGAGT
CTGTCCCGAGAGGTAAATGGTTCTGCACGCGGTGTAGCGCGCGGAGGTCAGTGCAAGGGA
TGCAGAGGTATGAGAAGTCGATCCTGGAGAAAGTCAAGCGTGCTCCTGGTGCCAATGGGC
CGAAGGTGCAGGCATCTGCTGGTCCAGAAAAATAGGCAGCAGTGTGGATGATGTTTCACA
GGCCATACTAGGGTAGAAGAAAGGGAAGGATACTTTTGTTCCTCTGAGGGAGGGGGTATA
CATTGCTCTGGTAGCTTTGAAGAATCGATGGATGGGTTGTGTATACGTGGGGGGAAGGAA
GATGCCCCGTTGGCTGCTGATGTTGATTCACTGTGCTGCCATTTCGTTTTTGGAATTCTT
GAGTGTCGCTCGGCTTGTTGTTGTGCTGTTATGTTGTGTCTGATGGTAAGTGGCATCGCT
TATCGATGATATGTACATGCCTGTAACTCGTTTTCTTTTAT