Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d034892_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:304951395:304953545:1 gene:Zm00001d034892 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pentatricopeptide repeat53 description: pentatricopeptide repeat53
Sequence

ATGGCGCCACTGCCAGCACCACCGACCGCGGCCTCCGCCTCCGCATTCCTCTTCTCCCCG
CCGCGAAGTCCGAGCCGCTACCTGCACCCCAAGCCCAAGCCCACCGCCACCATCCTCTGC
TCTTCCACCTCTGCCGCCACCGCCGCCGGCTCAGCATCGCCCTCCCTCTCCCAGCAGTTG
GAGCCGCTCTCCCGCACGCTCCTCCACGACAAGCCCACTCCGATCGCGGACCGCCCCACC
CCGGAGCCCACCTGGGTGAACCCCACCAAGCCTAAGCCCAGCGTGCTCTCGCTCCGTCGC
CACCGCCGCCGTTCCCCTCCCGCGAACACTTCCTCCACGCCGCTGCAGCCGCTGCTGCGC
GCCCTCCGCGCACTACCCGAGGATGCCGACCTCGCGGGCACCCTGGACGCCTTCTTCCTG
CAGCAGCAGGGGCAGGGTGCGGCGCCGTCCCCCTCCGACGCGCTCCTCCTCCTCAACTAC
CTCCACCCGTCGTGGCGCAAGTCGCTGTCCCTCCTCGCCTGGCTGCGCGCGCTCCCAGCC
GGCGCCTTCCCGCTGGACACCATCTTCTTCAACGTCGCCCTCAAGTCGCTCCGCGCTGCG
CGCCAGTGGCCGCACGCCGAGCGCCTCGCGCTGGACATGCTCGACGCGGGCGTGCCCCTC
GACAACATCACCTACTCCACGCTCATCACCGCCGCCCGCCGCTGCCGCCAGTTCGCCAAG
GCCGTCGAGTGGTTCGAGCGCATGTACGCCGCCGACGGCGTCCTGCCAGACGAGGTCACC
TACTCCGCCGTGCTCGACGTCTACGCGCAGCTCGGCATGAAGGAGGAGGTGCTCGCGCTC
TTCGACCGCGCCAGGGGCAGCGGCTGGAAGCCCGACCACGTCGCCTTCGCCGTCCTCGCC
AAGATGTTCGGGGAGGCAGGCGACTACGATGGCATCCAGTTCGTCTTCAAGGAGATGCGG
GAGGTCGGCATCAAGCCCAACATCTTCGTCTACAACGCGCTGCTCGAGGCGCTGGGCAAG
ACCGGCAAGCCCGGCCTCGCGCGCAACCTGTTCGAGGAAATGATCGACCAGGGCGTCGAG
CCCAACGCGCGCACGCTCACCGCGCTCGCCAAGATCTACGGCAGGGCGCGCTGGGGCCGC
GACGCGCTCCAGCTCTGGGATAAGATGAGGGAGCTGAAGCTACCCGCCGATAGCATCCTC
TGCAACACGCTGCTGAGCATGTGCGCGGACGTGGGGCTCGTGGCCGAGGCCGAGCAGCTC
TTCAACGAGATGAAGGATCCGGAGTGCCGCGACGTCCCAAAGCCGGACAAGTGGAGCTAC
ACGGCCATGATCAACATCTATGGGAGCAACGGGGACACAGACAGTGCGCTCCAGCTGTTC
GCGGAAATGCTGAAGGGCGGGATAGAGCCCAACATAATGAGCTACACCATTGTCATCCAA
TGCCTCGGGAAGGCACGTAGGATACAGCAAGCGGTGGAGGTGCTTGAGTCCGGGCTGGAG
AAGGGTCTCAAGCCCGACGATCGGCTCTGTGGGTGCTTGCTCTCTGTCATCGCTCTGAGC
AGCGGGGAGGAGATGGAAATGGTGCTCTCCTCGCTGGAAAAGGTCAACCAGAACCTGGTC
AAGCTGATCAGAGTGCTCGGCGACGCCCAGGTCGGTGGTGACGATATCACAGAGGAGCTG
AAGAGCGTGCTGAACAGCGCTGCCCCTGAAGTACGCCGTCCTTACTGCAACTGTCTGATC
GATGTATGCCGCAACCACGGCTTCCCTCCACAGAGGGCAAGGGAAGTCTTCCACCTTGCC
CAGACCTATGGTTTGTACTCCAAGCTTCAGAGCAGGAAGGACGAGGAGTGGTCGCTGGAC
CTGCGGTCGCTCTCGGTTGGTGCAGCCAAGACAGCGTTTGATGACTGGATGCAGACTGTC
TCGGAGCGCTGGGCGCAGCAGAAGGACTTGCCAGAGTCCTTCAGCGTGTACACCGGATCC
AGCACCCACAAGTTTGCGCAGGGGCTGGCAAGTGCTTTCGCCGCTCATCTGGACCAAATG
GCGGTGCCATTCCATGCGAGCGAATCTCAAGCCGGCAGCTTCATCAGTTCAAGAGATGAT
CTGGTCTCTTGGTTGCAGATGAGCAGGTCGTCCGCAGTCGTTGCCGGATGA

Peptide Sequence

PEP ID

Zm00001d034892_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:304951395:304953545:1 gene:Zm00001d034892 transcript:Zm00001d034892_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pentatricopeptide repeat53 description: pentatricopeptide repeat53
Sequence

MAPLPAPPTAASASAFLFSPPRSPSRYLHPKPKPTATILCSSTSAATAAGSASPSLSQQL
EPLSRTLLHDKPTPIADRPTPEPTWVNPTKPKPSVLSLRRHRRRSPPANTSSTPLQPLLR
ALRALPEDADLAGTLDAFFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSLLAWLRALPA
GAFPLDTIFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQFAK
AVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLA
KMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVE
PNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILCNTLLSMCADVGLVAEAEQL
FNEMKDPECRDVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQ
CLGKARRIQQAVEVLESGLEKGLKPDDRLCGCLLSVIALSSGEEMEMVLSSLEKVNQNLV
KLIRVLGDAQVGGDDITEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPPQRAREVFHLA
QTYGLYSKLQSRKDEEWSLDLRSLSVGAAKTAFDDWMQTVSERWAQQKDLPESFSVYTGS
STHKFAQGLASAFAAHLDQMAVPFHASESQAGSFISSRDDLVSWLQMSRSSAVVAG

Transcript Sequence

Transcript ID

Zm00001d034892_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:304951395:304953545:1 gene:Zm00001d034892 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pentatricopeptide repeat53 description: pentatricopeptide repeat53
Sequence

ATGGCGCCACTGCCAGCACCACCGACCGCGGCCTCCGCCTCCGCATTCCTCTTCTCCCCG
CCGCGAAGTCCGAGCCGCTACCTGCACCCCAAGCCCAAGCCCACCGCCACCATCCTCTGC
TCTTCCACCTCTGCCGCCACCGCCGCCGGCTCAGCATCGCCCTCCCTCTCCCAGCAGTTG
GAGCCGCTCTCCCGCACGCTCCTCCACGACAAGCCCACTCCGATCGCGGACCGCCCCACC
CCGGAGCCCACCTGGGTGAACCCCACCAAGCCTAAGCCCAGCGTGCTCTCGCTCCGTCGC
CACCGCCGCCGTTCCCCTCCCGCGAACACTTCCTCCACGCCGCTGCAGCCGCTGCTGCGC
GCCCTCCGCGCACTACCCGAGGATGCCGACCTCGCGGGCACCCTGGACGCCTTCTTCCTG
CAGCAGCAGGGGCAGGGTGCGGCGCCGTCCCCCTCCGACGCGCTCCTCCTCCTCAACTAC
CTCCACCCGTCGTGGCGCAAGTCGCTGTCCCTCCTCGCCTGGCTGCGCGCGCTCCCAGCC
GGCGCCTTCCCGCTGGACACCATCTTCTTCAACGTCGCCCTCAAGTCGCTCCGCGCTGCG
CGCCAGTGGCCGCACGCCGAGCGCCTCGCGCTGGACATGCTCGACGCGGGCGTGCCCCTC
GACAACATCACCTACTCCACGCTCATCACCGCCGCCCGCCGCTGCCGCCAGTTCGCCAAG
GCCGTCGAGTGGTTCGAGCGCATGTACGCCGCCGACGGCGTCCTGCCAGACGAGGTCACC
TACTCCGCCGTGCTCGACGTCTACGCGCAGCTCGGCATGAAGGAGGAGGTGCTCGCGCTC
TTCGACCGCGCCAGGGGCAGCGGCTGGAAGCCCGACCACGTCGCCTTCGCCGTCCTCGCC
AAGATGTTCGGGGAGGCAGGCGACTACGATGGCATCCAGTTCGTCTTCAAGGAGATGCGG
GAGGTCGGCATCAAGCCCAACATCTTCGTCTACAACGCGCTGCTCGAGGCGCTGGGCAAG
ACCGGCAAGCCCGGCCTCGCGCGCAACCTGTTCGAGGAAATGATCGACCAGGGCGTCGAG
CCCAACGCGCGCACGCTCACCGCGCTCGCCAAGATCTACGGCAGGGCGCGCTGGGGCCGC
GACGCGCTCCAGCTCTGGGATAAGATGAGGGAGCTGAAGCTACCCGCCGATAGCATCCTC
TGCAACACGCTGCTGAGCATGTGCGCGGACGTGGGGCTCGTGGCCGAGGCCGAGCAGCTC
TTCAACGAGATGAAGGATCCGGAGTGCCGCGACGTCCCAAAGCCGGACAAGTGGAGCTAC
ACGGCCATGATCAACATCTATGGGAGCAACGGGGACACAGACAGTGCGCTCCAGCTGTTC
GCGGAAATGCTGAAGGGCGGGATAGAGCCCAACATAATGAGCTACACCATTGTCATCCAA
TGCCTCGGGAAGGCACGTAGGATACAGCAAGCGGTGGAGGTGCTTGAGTCCGGGCTGGAG
AAGGGTCTCAAGCCCGACGATCGGCTCTGTGGGTGCTTGCTCTCTGTCATCGCTCTGAGC
AGCGGGGAGGAGATGGAAATGGTGCTCTCCTCGCTGGAAAAGGTCAACCAGAACCTGGTC
AAGCTGATCAGAGTGCTCGGCGACGCCCAGGTCGGTGGTGACGATATCACAGAGGAGCTG
AAGAGCGTGCTGAACAGCGCTGCCCCTGAAGTACGCCGTCCTTACTGCAACTGTCTGATC
GATGTATGCCGCAACCACGGCTTCCCTCCACAGAGGGCAAGGGAAGTCTTCCACCTTGCC
CAGACCTATGGTTTGTACTCCAAGCTTCAGAGCAGGAAGGACGAGGAGTGGTCGCTGGAC
CTGCGGTCGCTCTCGGTTGGTGCAGCCAAGACAGCGTTTGATGACTGGATGCAGACTGTC
TCGGAGCGCTGGGCGCAGCAGAAGGACTTGCCAGAGTCCTTCAGCGTGTACACCGGATCC
AGCACCCACAAGTTTGCGCAGGGGCTGGCAAGTGCTTTCGCCGCTCATCTGGACCAAATG
GCGGTGCCATTCCATGCGAGCGAATCTCAAGCCGGCAGCTTCATCAGTTCAAGAGATGAT
CTGGTCTCTTGGTTGCAGATGAGCAGGTCGTCCGCAGTCGTTGCCGGATGA