Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d034863_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:1:304072241:304074510:-1 gene:Zm00001d034863 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence	ATGGGTGTGCTGAGAAGGGCTGTGCCCGTGCCGTGCCCTCCGCGCCGCGGTCGACTCAGG TATACCAGGCCAGCACGCGGCGCGCCATTGGAGCTGGAGAAGAGGGCCGGTAGGTGGACT CCCACAGACTTTGCCTTCCTCTCTTCCGCAGTAGTGCAGTACCAAGACCAACCACTGTCC GGCAGGCTGTCGTCATCCACCGGCCGGCACATTGTGCATGCACTTGCGCATCGGATCGCA TCAGCTGCTGCTTTTGTCCACCAAGCAACTATTCCCTTTCCTTCCGCCGCCCAAATGCCC TCGTGCCCGGCACCGGCACCGGCAGTGGCCACCTTCCTCCTCGTCGCGCTTCTCTCGTGC GGCACACGGGCCATCCGGACGCACGGCGGCTATGTCTCCGCGGTCGGGGACCCCGGCATG CGGCGCGACGGCCTCCGCGTGGCATGGGAGGCGTGGAACTTCTGCAACGAGGTCGGCCAG GAGGCCCCCGGCATGGGCAGCCCCCGCGGTGCCGATTGCTTCGATCTTCTCGAGACGAGC TCCGACGAGGAGGGGCGGCCGGTGTACTCGGTGGCGCACCTGGTGAGCGACGCCGACAAC CGCCTGGGCGCGGGCGACCCGTTCCCGGGGTCCCCGCCGGGCGCGGCCCGCGTCACGGAC GCCGACCTCTACGCGCCGGCCAAGGAGCTGTACCTCGGCGACCGCTGCCAGGTGGCCGAC ACCCCGGCGCCGTGGCAGTTCTGGATGGTCATGCTCAAGAACGGCAACCTCGACACCACC GCCGCCGCCTGCCCGGAGAACGGCCGCCCCGCGCGCCCGTTCCCGCAGACGTCCCGCTTC CCGTGCCCCGCCGGCGCCGGGTGCATGAACCAGCCGCTGCTGTTCCACAACCGCACCGCG CTGGACGACGCCGGCCGCCGGCTCCGCGGCGGCCTGTTCGGGACCTACGACCTCGACGCC GCCGCGGGTCTCGGCGCCGGCGACGTCTCCTTCTACTCCGTGACGTGGGAGAAGGATGTG GCGGCGAGCGGTCGCGGCGGCGGGTGGGCATTCCACCACAAGCTGTGCACGTCCACCAAG TACCCGTGGCTGATGCTGTACCTACGGTCCGACGCCACCAGGGGCTTCTCCGGCGGGTAC CACTACGACACCAGAGGCATGACCAAGACAGTGCCGGAGTCTCCGGACTTCAAGGTGCGG CTGACCCTGGACGTGAAGCAGGGCGGCGGGCGCAACAGCCAGTTCTACCTGATGGACATG GGCAGCTGCTGGAAGAACGACGGGCGCGCCTGCGACGGCGACACGGCGACGGACGTGACG CGGTACAGCGAGATGATCATCAACCCGGCCACGCCGGCGTGGTGCTCGCCGTCGCGGATC GACCAGTGCCCGCCATGGCACACCTTCCGGAACGGCAGCCGCGTGCACCGCCGCGACGGA GCCCGCTTCCCCTACGGCGCCTACCACGTGTACTGCTCCCCCGGGAACGCGGCGCGCGCG GAGCAGCCCACCACCTACTGCGACGCCTACAGCAACCCGCAGGCGCAGGAGATCCTGCAG CTGCTGCCGCACCCCGTGTGGGGAGAGTTCGGCTACCCGACGGCCAGGGGACAGGGGTGG GTCGGCGACCCCAGGGCGTGGGACCTCGACGTCGGCGCCATGTCCCAGGCGCTCTACTTC TACCAGGACCCCGGCACGCCGCCGGCCAGGAGGCGGTGGACGTCGCTCGACGTCGGCACG GAGATATACGTCAGCGACAGGGCCGAGGAGGCGGAGTGGACGCTCAGTGGCTTCGACATC CTTGTGCCGGACAAGTGTATCAAGTCACAGCAACGGGCCAGCAACAGCTGCTGGTAG

Peptide Sequence

PEP ID	Zm00001d034863_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:1:304072241:304074510:-1 gene:Zm00001d034863 transcript:Zm00001d034863_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence	MGVLRRAVPVPCPPRRGRLRYTRPARGAPLELEKRAGRWTPTDFAFLSSAVVQYQDQPLS GRLSSSTGRHIVHALAHRIASAAAFVHQATIPFPSAAQMPSCPAPAPAVATFLLVALLSC GTRAIRTHGGYVSAVGDPGMRRDGLRVAWEAWNFCNEVGQEAPGMGSPRGADCFDLLETS SDEEGRPVYSVAHLVSDADNRLGAGDPFPGSPPGAARVTDADLYAPAKELYLGDRCQVAD TPAPWQFWMVMLKNGNLDTTAAACPENGRPARPFPQTSRFPCPAGAGCMNQPLLFHNRTA LDDAGRRLRGGLFGTYDLDAAAGLGAGDVSFYSVTWEKDVAASGRGGGWAFHHKLCTSTK YPWLMLYLRSDATRGFSGGYHYDTRGMTKTVPESPDFKVRLTLDVKQGGGRNSQFYLMDM GSCWKNDGRACDGDTATDVTRYSEMIINPATPAWCSPSRIDQCPPWHTFRNGSRVHRRDG ARFPYGAYHVYCSPGNAARAEQPTTYCDAYSNPQAQEILQLLPHPVWGEFGYPTARGQGW VGDPRAWDLDVGAMSQALYFYQDPGTPPARRRWTSLDVGTEIYVSDRAEEAEWTLSGFDI LVPDKCIKSQQRASNSCW

Transcript Sequence

Transcript ID	Zm00001d034863_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:304072241:304074510:-1 gene:Zm00001d034863 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence	AGGCACGTGGTAGAGCGATGGGTGTGCTGAGAAGGGCTGTGCCCGTGCCGTGCCCTCCGC GCCGCGGTCGACTCAGGTATACCAGGCCAGCACGCGGCGCGCCATTGGAGCTGGAGAAGA GGGCCGGTAGGTGGACTCCCACAGACTTTGCCTTCCTCTCTTCCGCAGTAGTGCAGTACC AAGACCAACCACTGTCCGGCAGGCTGTCGTCATCCACCGGCCGGCACATTGTGCATGCAC TTGCGCATCGGATCGCATCAGCTGCTGCTTTTGTCCACCAAGCAACTATTCCCTTTCCTT CCGCCGCCCAAATGCCCTCGTGCCCGGCACCGGCACCGGCAGTGGCCACCTTCCTCCTCG TCGCGCTTCTCTCGTGCGGCACACGGGCCATCCGGACGCACGGCGGCTATGTCTCCGCGG TCGGGGACCCCGGCATGCGGCGCGACGGCCTCCGCGTGGCATGGGAGGCGTGGAACTTCT GCAACGAGGTCGGCCAGGAGGCCCCCGGCATGGGCAGCCCCCGCGGTGCCGATTGCTTCG ATCTTCTCGAGACGAGCTCCGACGAGGAGGGGCGGCCGGTGTACTCGGTGGCGCACCTGG TGAGCGACGCCGACAACCGCCTGGGCGCGGGCGACCCGTTCCCGGGGTCCCCGCCGGGCG CGGCCCGCGTCACGGACGCCGACCTCTACGCGCCGGCCAAGGAGCTGTACCTCGGCGACC GCTGCCAGGTGGCCGACACCCCGGCGCCGTGGCAGTTCTGGATGGTCATGCTCAAGAACG GCAACCTCGACACCACCGCCGCCGCCTGCCCGGAGAACGGCCGCCCCGCGCGCCCGTTCC CGCAGACGTCCCGCTTCCCGTGCCCCGCCGGCGCCGGGTGCATGAACCAGCCGCTGCTGT TCCACAACCGCACCGCGCTGGACGACGCCGGCCGCCGGCTCCGCGGCGGCCTGTTCGGGA CCTACGACCTCGACGCCGCCGCGGGTCTCGGCGCCGGCGACGTCTCCTTCTACTCCGTGA CGTGGGAGAAGGATGTGGCGGCGAGCGGTCGCGGCGGCGGGTGGGCATTCCACCACAAGC TGTGCACGTCCACCAAGTACCCGTGGCTGATGCTGTACCTACGGTCCGACGCCACCAGGG GCTTCTCCGGCGGGTACCACTACGACACCAGAGGCATGACCAAGACAGTGCCGGAGTCTC CGGACTTCAAGGTGCGGCTGACCCTGGACGTGAAGCAGGGCGGCGGGCGCAACAGCCAGT TCTACCTGATGGACATGGGCAGCTGCTGGAAGAACGACGGGCGCGCCTGCGACGGCGACA CGGCGACGGACGTGACGCGGTACAGCGAGATGATCATCAACCCGGCCACGCCGGCGTGGT GCTCGCCGTCGCGGATCGACCAGTGCCCGCCATGGCACACCTTCCGGAACGGCAGCCGCG TGCACCGCCGCGACGGAGCCCGCTTCCCCTACGGCGCCTACCACGTGTACTGCTCCCCCG GGAACGCGGCGCGCGCGGAGCAGCCCACCACCTACTGCGACGCCTACAGCAACCCGCAGG CGCAGGAGATCCTGCAGCTGCTGCCGCACCCCGTGTGGGGAGAGTTCGGCTACCCGACGG CCAGGGGACAGGGGTGGGTCGGCGACCCCAGGGCGTGGGACCTCGACGTCGGCGCCATGT CCCAGGCGCTCTACTTCTACCAGGACCCCGGCACGCCGCCGGCCAGGAGGCGGTGGACGT CGCTCGACGTCGGCACGGAGATATACGTCAGCGACAGGGCCGAGGAGGCGGAGTGGACGC TCAGTGGCTTCGACATCCTTGTGCCGGACAAGTGTATCAAGTCACAGCAACGGGCCAGCA ACAGCTGCTGGTAGACAGACACTTTAATGTCACTGTACGTTACGCTGAGTAGCATAGCAG GCCAAAGTGTTCTTCGTACTAGAAGAGGTGGTGTAGGATGACTATATTACTCATGTTAGT ACTAACTAACTATAAAAAATAAAATGATGATTAATCAACTT