Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d034842_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:1:303635490:303640928:-1 gene:Zm00001d034842 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oligomeric Golgi complex subunit 2
Sequence

ATGGCGGACCTCGTCATGGCCCCTCCGCCGGCCATGGACCTCTTCGGGGAGCCGATCGAG
GCGCACCCTCCCTGGTTCAAGCCCGACGCCTTCCTCCGCGCGGGCTTCGACGCGGACGCC
TACGTCGCCGAGCTCCGCTCCTACGTCCCGCTCGACAGCCTCGCCGCCGAGCTCCGCGCC
CACCTCGCCGCGCTCCGCGCCGAGCTCGTCGGCCTCATCAACCGCGACTACGCCGACTTC
GTCGGCCTCAGCGCGCACCTCAAGGGCGTCGACGCCGCCGCGGCCCGGATGCGCGCCCCG
CTCGCCGACCTCAGGGACAAGGTCGCCGCCTTCCGCGCCGGGGCATCCGCCGCGCTCGCC
GCGCTCAGGGAGGGGCTCCAGCAGCGGGCCGCCGCCACCGCCGCGCGCGAGCTGCTCGAG
CTCCTGCTCGACACCTCCCACGTCGTCTCCAAGGTTGAGAAATTGATCAAGGAACTACCA
ACTGCACCGTCAGATTCATCTAATGCTGAAATTCCTATCAATGACACTGGAACACCAAAT
GGGAAGGCTGGGACAGGTGTCAGAGAAACACAGAGCATTCTCCTAGAAAGAATTGCCAGC
GAGATGAACCGTCTTAAATTCTACATTAGTCATGCAGAGAACCTCCCTTTTATTGAGAAC
ATGGAGAAGAGGATCCAAGGTGCTACAAAACTGCTGGATGGTAGTTTGGAGCGCTGCTTT
GTGGATGGTCTGGAACACCGTGATGCTAAAGTTATATACAACTGTTTGCGTGCTTATGCT
GCAATTGACAATACATCATCAGCCGAAGAGCTTTTTCGTACAACAGTGGTGTCTCCATTG
ATCCAGAAAATAGTTCCTCAAAACTATGCAAGAGCTGTTGCTGGGGCATCATCTGATGAG
CTAGAAGAGGATTATCAACAGATAAAGGCATGCGTAGAAAAAGATTGCAAATTTATATTG
GAAATATCTTCGTCAGAAAACTCTGGATTGCATGTTTTTGATTTTCTGGGTAATTCAATA
CTCAAAGAAGTCCTTTCTGCAATCCAGAAAGGCAAGCCTGGGGCCTTTTCTCCTGGAAAG
CCTAAAGAATTCTTGAGGAACTACAAAGTGAGCTTAGGATTTCTTGATTTTCTTGAAGGC
TACTGCTTCTCCAAGTCTGCTGTAACGAAGTTACGCTATGAGCCTGCTTACACAGATTTC
ATGCGACAGTGGAATGTTGGTGTCTACTTTTCGTTGCGATTTCAGGAAATTGCGGGTGGC
CTTGATTCTACTCTTACAAATACCTTTAGTCCTACTGGATTGAATGAGGCTCAACAGAAA
CCGTTGCTCTTGAAACAAAGTATTAAGCTCTTAGAAAGTTTGGATTCATGTTGGAGTGAT
GAGGTTCTTGTATTCTCTCACTGCGATAAATTCCTCCGTCTGTCCTTGCAGCTTATTTCA
AGGTATACAACATGGCTTTCATGTGGTTTATCAGCACGTAAAGCTTCTGACAGGAGCCCA
AATTCACCTGCAGATGCTGAATGGGCACTGTCTATTCCTATAGAAGATTTCATATATATA
ATGCATGATGTGCATGCTGTAATTGGTGAGCTTTCAGAATCAGGCAGCTTTATTGGACAT
GTGAATCAGTCACTAGGGTCATGCCCCATTGAAGTATTTAATCTTGTGAAAGGAAGTATA
TTGCAAGCTGCTGAACCTTTAAAGGAGCTGTTGCCTGCAATAATGGATGTCATGATTGGA
ATCATAGTTAAGAAGTCTAATGAGGACCTGAAGCACCTGAAAGGAATAACAGCGACATAT
AGGATGACGAGTAAACTTCCAGTCAGGCATTCTCCATATGTATCAGGGATTTTACATCCA
CTGAAGGTGTTTCTTGAAGGGGACCGTATGCACTATCTATCAGAAGATGATAAAACTAAG
TTGTGTCGTGGGTCTGCAAATAAGATTACTGCAACCTACTATGACTTGGTCTCTGAAGTT
GTCACTGTGGCAAGGAAAACCGAGTCTTCATTGCAGAGACTGCGCCAAGGTGCACAAAGG
CGAGTAGGAGCTAGTACAGATGCCTCAGATAGCATCATATCTGATACAGACAAGATCTGT
ATGCAGCTATTTCTTGATATTCAGGTTTGCTGTCTGCCCCTTCTTCCCTTGTGCTCATAA

Peptide Sequence

PEP ID

Zm00001d034842_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:1:303635490:303640928:-1 gene:Zm00001d034842 transcript:Zm00001d034842_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oligomeric Golgi complex subunit 2
Sequence

MADLVMAPPPAMDLFGEPIEAHPPWFKPDAFLRAGFDADAYVAELRSYVPLDSLAAELRA
HLAALRAELVGLINRDYADFVGLSAHLKGVDAAAARMRAPLADLRDKVAAFRAGASAALA
ALREGLQQRAAATAARELLELLLDTSHVVSKVEKLIKELPTAPSDSSNAEIPINDTGTPN
GKAGTGVRETQSILLERIASEMNRLKFYISHAENLPFIENMEKRIQGATKLLDGSLERCF
VDGLEHRDAKVIYNCLRAYAAIDNTSSAEELFRTTVVSPLIQKIVPQNYARAVAGASSDE
LEEDYQQIKACVEKDCKFILEISSSENSGLHVFDFLGNSILKEVLSAIQKGKPGAFSPGK
PKEFLRNYKVSLGFLDFLEGYCFSKSAVTKLRYEPAYTDFMRQWNVGVYFSLRFQEIAGG
LDSTLTNTFSPTGLNEAQQKPLLLKQSIKLLESLDSCWSDEVLVFSHCDKFLRLSLQLIS
RYTTWLSCGLSARKASDRSPNSPADAEWALSIPIEDFIYIMHDVHAVIGELSESGSFIGH
VNQSLGSCPIEVFNLVKGSILQAAEPLKELLPAIMDVMIGIIVKKSNEDLKHLKGITATY
RMTSKLPVRHSPYVSGILHPLKVFLEGDRMHYLSEDDKTKLCRGSANKITATYYDLVSEV
VTVARKTESSLQRLRQGAQRRVGASTDASDSIISDTDKICMQLFLDIQVCCLPLLPLCS

Transcript Sequence

Transcript ID

Zm00001d034842_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:303635490:303640928:-1 gene:Zm00001d034842 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oligomeric Golgi complex subunit 2
Sequence

AAGTCTAGACCTCTATGGCGGACCTCGTCATGGCCCCTCCGCCGGCCATGGACCTCTTCG
GGGAGCCGATCGAGGCGCACCCTCCCTGGTTCAAGCCCGACGCCTTCCTCCGCGCGGGCT
TCGACGCGGACGCCTACGTCGCCGAGCTCCGCTCCTACGTCCCGCTCGACAGCCTCGCCG
CCGAGCTCCGCGCCCACCTCGCCGCGCTCCGCGCCGAGCTCGTCGGCCTCATCAACCGCG
ACTACGCCGACTTCGTCGGCCTCAGCGCGCACCTCAAGGGCGTCGACGCCGCCGCGGCCC
GGATGCGCGCCCCGCTCGCCGACCTCAGGGACAAGGTCGCCGCCTTCCGCGCCGGGGCAT
CCGCCGCGCTCGCCGCGCTCAGGGAGGGGCTCCAGCAGCGGGCCGCCGCCACCGCCGCGC
GCGAGCTGCTCGAGCTCCTGCTCGACACCTCCCACGTCGTCTCCAAGGTTGAGAAATTGA
TCAAGGAACTACCAACTGCACCGTCAGATTCATCTAATGCTGAAATTCCTATCAATGACA
CTGGAACACCAAATGGGAAGGCTGGGACAGGTGTCAGAGAAACACAGAGCATTCTCCTAG
AAAGAATTGCCAGCGAGATGAACCGTCTTAAATTCTACATTAGTCATGCAGAGAACCTCC
CTTTTATTGAGAACATGGAGAAGAGGATCCAAGGTGCTACAAAACTGCTGGATGGTAGTT
TGGAGCGCTGCTTTGTGGATGGTCTGGAACACCGTGATGCTAAAGTTATATACAACTGTT
TGCGTGCTTATGCTGCAATTGACAATACATCATCAGCCGAAGAGCTTTTTCGTACAACAG
TGGTGTCTCCATTGATCCAGAAAATAGTTCCTCAAAACTATGCAAGAGCTGTTGCTGGGG
CATCATCTGATGAGCTAGAAGAGGATTATCAACAGATAAAGGCATGCGTAGAAAAAGATT
GCAAATTTATATTGGAAATATCTTCGTCAGAAAACTCTGGATTGCATGTTTTTGATTTTC
TGGGTAATTCAATACTCAAAGAAGTCCTTTCTGCAATCCAGAAAGGCAAGCCTGGGGCCT
TTTCTCCTGGAAAGCCTAAAGAATTCTTGAGGAACTACAAAGTGAGCTTAGGATTTCTTG
ATTTTCTTGAAGGCTACTGCTTCTCCAAGTCTGCTGTAACGAAGTTACGCTATGAGCCTG
CTTACACAGATTTCATGCGACAGTGGAATGTTGGTGTCTACTTTTCGTTGCGATTTCAGG
AAATTGCGGGTGGCCTTGATTCTACTCTTACAAATACCTTTAGTCCTACTGGATTGAATG
AGGCTCAACAGAAACCGTTGCTCTTGAAACAAAGTATTAAGCTCTTAGAAAGTTTGGATT
CATGTTGGAGTGATGAGGTTCTTGTATTCTCTCACTGCGATAAATTCCTCCGTCTGTCCT
TGCAGCTTATTTCAAGGTATACAACATGGCTTTCATGTGGTTTATCAGCACGTAAAGCTT
CTGACAGGAGCCCAAATTCACCTGCAGATGCTGAATGGGCACTGTCTATTCCTATAGAAG
ATTTCATATATATAATGCATGATGTGCATGCTGTAATTGGTGAGCTTTCAGAATCAGGCA
GCTTTATTGGACATGTGAATCAGTCACTAGGGTCATGCCCCATTGAAGTATTTAATCTTG
TGAAAGGAAGTATATTGCAAGCTGCTGAACCTTTAAAGGAGCTGTTGCCTGCAATAATGG
ATGTCATGATTGGAATCATAGTTAAGAAGTCTAATGAGGACCTGAAGCACCTGAAAGGAA
TAACAGCGACATATAGGATGACGAGTAAACTTCCAGTCAGGCATTCTCCATATGTATCAG
GGATTTTACATCCACTGAAGGTGTTTCTTGAAGGGGACCGTATGCACTATCTATCAGAAG
ATGATAAAACTAAGTTGTGTCGTGGGTCTGCAAATAAGATTACTGCAACCTACTATGACT
TGGTCTCTGAAGTTGTCACTGTGGCAAGGAAAACCGAGTCTTCATTGCAGAGACTGCGCC
AAGGTGCACAAAGGCGAGTAGGAGCTAGTACAGATGCCTCAGATAGCATCATATCTGATA
CAGACAAGATCTGTATGCAGCTATTTCTTGATATTCAGGTTTGCTGTCTGCCCCTTCTTC
CCTTGTGCTCATAAAAAAAATGATATTGATGCAATGTGATGGCCATGAAAAATTTATCTG
TCTATATTCCTTCTTTGCATC