Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d034759_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:1:301499798:301507555:1 gene:Zm00001d034759 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactose oxidase/kelch repeat superfamily protein
Sequence

ATGTTACTAACAATATGGTGTTTATCTCACAGTTTAGGTGATTTCTGGATGCTAGACACT
GACTTATGGCAATGGTCGGAGATGACTGGCTTTGGTGATTTACCGTCACCACGAGAGTTT
GCTGCTGCTTCAGCCATAGGAAACAGAAAGATTGTTATGTATGGTGGATGGGATGGCAAA
AAATGGCTTTCAGATGTATACATCATGGACACAATGTCACTGGAGTGGACAGAATTAGCT
GTTACTGGATCTGTGCCACCTCCAAGATGTGGGCATTCGGCAACCATGATTGAGAAGAGA
CTCCTTATATTTGGAGGCAGAGGTGGAGCAGGACCAATAATGGGTGATTTATGGGCTTTA
AAGGGTATTACTGAAGAAGACAATGAGGCGCCAGGTTGGACACAGTTGAAACTTCCAGGG
CAATCTCCCTCACCACGATGCGGTCATTCAGTAACATCTGGTGGACCTTATCTCTTGCTG
TTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGATATGATGTGTACTATAATGAATGC
ATTATTTTAGACAGGGTATCTGTTCAATGGAAGCGCTTACCAACAAGCAATGAACCACCT
CCTCCTCGGGCATATCATTCCATAACTTCCATAGGGTCTCGATTTCTTTTATTTGGTGGC
TTTGATGGAAAGAATACATTTGGTGATTTGTGGTGGCTTGTTCCTGAAGACGATCCTATT
GCGAAACGAGACTTAGTTCCTAGCATCGATTCAAACAGCAAACCTAGCACTGTGACTGAT
GATAACCAGCTATTGAACCTAAAGGAGTCACAAGCTCTAGAAAATCCAATAACAGAATTG
GCCAAACGTCTGGGGATTGCACTTTCTGAAGAAGTTTCAGCAAGTTTTGTTGACGAAGCC
AATGATAAAGAACTTGTGGAATTGTCATCTAGACTTGCTGGTCAATCGCTTCCAGCTAGT
GACCAGGTTGCATCAATTCAGGTACTTCGTGATCATTGGAAAAGTTCTCCAGCAAGCTCA
CTACAACTACAGGAACTAGGACCTTTGCTGAGGGACTATCAACGCCTCATCTTGCGACAC
TATACGGGAAATTCATTGCCAGCTTTTCGTGAAATGGAAGCTCTCCGTTTTTTCCATCTA
AAAAGTGCTTCACAGTTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGG
CTGCTTTCAACATGA

Peptide Sequence

PEP ID

Zm00001d034759_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:1:301499798:301507555:1 gene:Zm00001d034759 transcript:Zm00001d034759_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactose oxidase/kelch repeat superfamily protein
Sequence

MLLTIWCLSHSLGDFWMLDTDLWQWSEMTGFGDLPSPREFAAASAIGNRKIVMYGGWDGK
KWLSDVYIMDTMSLEWTELAVTGSVPPPRCGHSATMIEKRLLIFGGRGGAGPIMGDLWAL
KGITEEDNEAPGWTQLKLPGQSPSPRCGHSVTSGGPYLLLFGGHGTGGWLSRYDVYYNEC
IILDRVSVQWKRLPTSNEPPPPRAYHSITSIGSRFLLFGGFDGKNTFGDLWWLVPEDDPI
AKRDLVPSIDSNSKPSTVTDDNQLLNLKESQALENPITELAKRLGIALSEEVSASFVDEA
NDKELVELSSRLAGQSLPASDQVASIQVLRDHWKSSPASSLQLQELGPLLRDYQRLILRH
YTGNSLPAFREMEALRFFHLKSASQLRMDDIPVLLSEYGRLLST

Transcript Sequence

Transcript ID

Zm00001d034759_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:301499798:301507555:1 gene:Zm00001d034759 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactose oxidase/kelch repeat superfamily protein
Sequence

GCTTCGTCCGATCCCCTCTCCCCCACCTGCCAGACTCCCCGCCGTCCACCGCTCGCCGCC
CCCGGCCGCCATCCAGCCGCCGGTACAGGGCTCATCCTCCCGGTCGCAGCCGTGTCCACT
TCCTTCACGAAGAGAGGCGCGTAGACTGGGGAGCTGGAGCGAGGACAAGGAGACGAGGGA
AAGGATGCAGCAGCTGCAACCGAAGCAGATGCACTGGGTGAGGGCCGACTCCTCCGACTT
CGGGGGCGACCGTCCCGCCCCCCGCAGCGGGCACACTGCGGTTATCATTGGCAAGTCCAA
GGTGGTCGTCTTCGGAGGATTCGCCGACAAGCGCTTCCTCGCTGATGTTTCCGTCTACGA
CGTCGGTAATATAATTCCTCTCCAATTCTCCGACTGTTCGCTTGTCGTGCCAATTTGCCT
GCCCACGTCTTCGAGCAATTTGTGCACACGCTGCAACTCATCTTAAGGGTTATTAGATTG
AGGGACGTAGATTGCATTTACATGCTTGAGATTGTTATGGATGGGCTGATGGAGCATATG
CATTGGAAGGAAGAAAGAGCTTGGCCTTACAAACTTCTGGATGCAACTTATGTTGCAGAG
AATAAGCTATGGTACACACCTGAGTGCACTGGTAATGGGTCGGATGGGCAGGCCGGCCCA
AGCCCAAGGGCTTTTCACATAGCTGTTGTCATTGACTGCAACATGTTCATCTTTGGTGGC
CGATCTGGGGGCAAGCGGTATGCAGTCCACTAGCTTATCCAGCAGAACTTGGTAGCTTAC
ATAAACAGTTTCCTATATGTTACTAACAATATGGTGTTTATCTCACAGTTTAGGTGATTT
CTGGATGCTAGACACTGACTTATGGCAATGGTCGGAGATGACTGGCTTTGGTGATTTACC
GTCACCACGAGAGTTTGCTGCTGCTTCAGCCATAGGAAACAGAAAGATTGTTATGTATGG
TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAATGTCACTGGA
GTGGACAGAATTAGCTGTTACTGGATCTGTGCCACCTCCAAGATGTGGGCATTCGGCAAC
CATGATTGAGAAGAGACTCCTTATATTTGGAGGCAGAGGTGGAGCAGGACCAATAATGGG
TGATTTATGGGCTTTAAAGGGTATTACTGAAGAAGACAATGAGGCGCCAGGTTGGACACA
GTTGAAACTTCCAGGGCAATCTCCCTCACCACGATGCGGTCATTCAGTAACATCTGGTGG
ACCTTATCTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGATATGATGT
GTACTATAATGAATGCATTATTTTAGACAGGGTATCTGTTCAATGGAAGCGCTTACCAAC
AAGCAATGAACCACCTCCTCCTCGGGCATATCATTCCATAACTTCCATAGGGTCTCGATT
TCTTTTATTTGGTGGCTTTGATGGAAAGAATACATTTGGTGATTTGTGGTGGCTTGTTCC
TGAAGACGATCCTATTGCGAAACGAGACTTAGTTCCTAGCATCGATTCAAACAGCAAACC
TAGCACTGTGACTGATGATAACCAGCTATTGAACCTAAAGGAGTCACAAGCTCTAGAAAA
TCCAATAACAGAATTGGCCAAACGTCTGGGGATTGCACTTTCTGAAGAAGTTTCAGCAAG
TTTTGTTGACGAAGCCAATGATAAAGAACTTGTGGAATTGTCATCTAGACTTGCTGGTCA
ATCGCTTCCAGCTAGTGACCAGGTTGCATCAATTCAGGTACTTCGTGATCATTGGAAAAG
TTCTCCAGCAAGCTCACTACAACTACAGGAACTAGGACCTTTGCTGAGGGACTATCAACG
CCTCATCTTGCGACACTATACGGGAAATTCATTGCCAGCTTTTCGTGAAATGGAAGCTCT
CCGTTTTTTCCATCTAAAAAGTGCTTCACAGTTGCGCATGGATGACATTCCCGTCCTGTT
GAGCGAGTATGGAAGGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTG
CTTGGTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGACAAAA
GCACACCCGTGGAGCCATTCCTTGCCATCAGTTGGTCTGTTAGTGCAAGTCATAGTCGTA
GCAGCGATAGCGCACTGAGCTGAATTCCTTTTTCTTTTGAGGACTGGACGCAGACGCACA
CATATTTCGTGCAGCCTGGCTGGGCGCTGGAATGGGGTCATGGTCATGGGCTCATGGCCA
TCCACACGTGGTTAGGCCTAGCTTAGGCGAGGAGCTGGGCGGCGTGGCAAACTTGGCAGG
CCGCCCATGGTCGCGTGGAATTCCAAGAAAACGGGGTTTTGTGTGATGTGAGGCTGGAAA
CCTGGGGGGTCAGCAGCACATGTTTCCAGTCTATTGCACTCCCTCTGACCGAAAGGGCGC
TGCACTGCAATTTTATTTTACTACCTTTGTTCAAAAATAATGGGCGTCTCCTTTTCAGAT
GT