Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d034650_T020
CDS Infomation

cds chromosome:B73_RefGen_v4:1:298808582:298816782:-1 gene:Zm00001d034650 gene_biotype:protein_coding transcript_biotype:protein_coding description:SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Sequence

ATGGGCACCGCTCGGATTTCTCGTGCAGGGAATTCAGGTTATTTGATTTCTCAGCTCTCC
AAGATGGATGCTCCTTATTTTTCAAAAATAGTACAGAAACTATCCATGCCACTGTTGTTT
CTGTCAGTCACAACAACAGTAAGTGAGCTGTCTTCCAAGCATGATGATGAACCAGATAAC
AATACAGAACATTCTGAGACACCTTCCGAAACAAATGAATTGGCGTCAACTTCTGGCACA
AGCGATGCTGCTGATGGCACAAAGGAAATCGTGCAAGAGAACTGGCTTGTGTTACTTTTC
AGGGAGCTTGAGAAGCAAGGCATCACTTTGCCTGAGAGGTTTACTGAAGATGAGTTACGC
AGATTTTATGTTGCTGCAAATGGCGACTTTCAAAGTTTACTCTCTTCGGTTAAGAAGACA
ATTCATTGGAGGGAAACATTTCACATACTTACATTGCAAGAACTTGATAGATGGTCTCAC
TTAGTCTTTTGGCATGGGTTTGACACGATGCTTCGGCCTTGTTTAGTAGTTCGTCTTGGA
CTTGCATGCTCTAGCATACCTCCTCATGATAGACCCCGTTTCGGGCAAGCAGTAGTTTCT
CAAATTGACCATGGCGTTGTAAATTTGATCAATGAAGAAGATTCAAGGATTACCGTTTTA
CTGGATTGCCATGGGATTTCGCCATTCAGATTTCCAATGCAAATGATGAGGTCGTTCATC
ACTGTGGTTCAAGAAAACTACCCGAATCGTCTTGGGGTATTGTTTGTCATCCGTCTTCCT
CCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAGTCTTGAAACCAGCTACAAAGCAG
AAGTTGCGTTTTGAGGGAGATTCGTACAAGAAGGCATTGGCGGAGTTCCTGCAGGCTGTG
CCAGCGTTTCTGGGCGGTAAATGCAGCTGCCCGCGATGTGAGAGTCCTCGTGATGATTCA
GTGATACAGGCAGGGGAAGGGAGCAAGAAGCAGCCCCGCTTGGTCAGCGTTGATGACGGG
TTACCTGTCACAGACTTGGACTTCGACTTGGATGAAGAGATCCCATCACCTTATAGCTGC
GAGAACGCCATCAGGGCTGCGATAATCGGCCTGCTGATGGTGTGCATCTTCGTCGCGTTT
CTGGCTGGGATGATCGACCCTGCATCCGTTCCAGCCAGTGCCTGA

Peptide Sequence

PEP ID

Zm00001d034650_P020
PEP Infomation

pep chromosome:B73_RefGen_v4:1:298808582:298816782:-1 gene:Zm00001d034650 transcript:Zm00001d034650_T020 gene_biotype:protein_coding transcript_biotype:protein_coding description:SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Sequence

MGTARISRAGNSGYLISQLSKMDAPYFSKIVQKLSMPLLFLSVTTTVSELSSKHDDEPDN
NTEHSETPSETNELASTSGTSDAADGTKEIVQENWLVLLFRELEKQGITLPERFTEDELR
RFYVAANGDFQSLLSSVKKTIHWRETFHILTLQELDRWSHLVFWHGFDTMLRPCLVVRLG
LACSSIPPHDRPRFGQAVVSQIDHGVVNLINEEDSRITVLLDCHGISPFRFPMQMMRSFI
TVVQENYPNRLGVLFVIRLPPVVRVIAQTFLQVLKPATKQKLRFEGDSYKKALAEFLQAV
PAFLGGKCSCPRCESPRDDSVIQAGEGSKKQPRLVSVDDGLPVTDLDFDLDEEIPSPYSC
ENAIRAAIIGLLMVCIFVAFLAGMIDPASVPASA

Transcript Sequence

Transcript ID

Zm00001d034650_T020
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:298808582:298816782:-1 gene:Zm00001d034650 gene_biotype:protein_coding transcript_biotype:protein_coding description:SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Sequence

CACGATCGCACACTTTTCCTCTGAGCCGCGACCTGTCTCTGTCTCTGTCTCTGTCTCTGT
TCTTCTGCCCCGACTCCGCCCACGCATCTCTTTCTCCTCTTCCCCCGCGCGGCGGCCGCG
GGAGTGTTCGTGTTCCTCACTTCTCCCGCTTGCGTCCCCGACACTCCCTCAGATCCGCGG
CCGTTTCCCGATCCGAGGGGCATTCCAGCCCTAAATAGCGGCCGGTGAGCAGGTCTCCTT
CCGCCGGCGCGGACCACCTGGAGGGAGTTTATCCTGGAGCCGTCTTCCTCCTCGCCTCCT
TTTGCGGCGCGGCGCGGAGGCCGGAGTCGCTTGGAGGCCCAGCTGTGTTTGGGTTGATTT
CTTCGTTTGTCGTGGTTAGAGGCACCTGGTTTGTTTTTTGCTGAAGCTGGTGGTACATGT
GAATAGCAGGGCCTGTCTTCTGCCTCTGCTTTTGCTTCGAAGCAATGGCGAATGCAAGCA
AGCACTTGCAACCTTCAAGTCAAGCAGGCAATGACAAGAAGTATCAGGGCACGCTGGTTG
CTTCACCAGCAAAGGCCATTTCACCTAAGTGTGTGAACCGCATTGTGCCATCGAAGCAAC
TGATCTTGGGTGGGGGTTCAATAGGCCATGTGGCATCATTTCTGATCAAGGTCGTTGCTC
TTGAGGCAGTGAGAAGAGTTTCTAAAACAAGATGCCCTTTCATATGGAATTCTGTTCAAG
CATTGCAGATCCTTGTGTATCCTCCATTTAGCTGGATCCAAAGATGGGCACCGCTCGGAT
TTCTCGTGCAGGGAATTCAGGTTATTTGATTTCTCAGCTCTCCAAGATGGATGCTCCTTA
TTTTTCAAAAATAGTACAGAAACTATCCATGCCACTGTTGTTTCTGTCAGTCACAACAAC
AGTAAGTGAGCTGTCTTCCAAGCATGATGATGAACCAGATAACAATACAGAACATTCTGA
GACACCTTCCGAAACAAATGAATTGGCGTCAACTTCTGGCACAAGCGATGCTGCTGATGG
CACAAAGGAAATCGTGCAAGAGAACTGGCTTGTGTTACTTTTCAGGGAGCTTGAGAAGCA
AGGCATCACTTTGCCTGAGAGGTTTACTGAAGATGAGTTACGCAGATTTTATGTTGCTGC
AAATGGCGACTTTCAAAGTTTACTCTCTTCGGTTAAGAAGACAATTCATTGGAGGGAAAC
ATTTCACATACTTACATTGCAAGAACTTGATAGATGGTCTCACTTAGTCTTTTGGCATGG
GTTTGACACGATGCTTCGGCCTTGTTTAGTAGTTCGTCTTGGACTTGCATGCTCTAGCAT
ACCTCCTCATGATAGACCCCGTTTCGGGCAAGCAGTAGTTTCTCAAATTGACCATGGCGT
TGTAAATTTGATCAATGAAGAAGATTCAAGGATTACCGTTTTACTGGATTGCCATGGGAT
TTCGCCATTCAGATTTCCAATGCAAATGATGAGGTCGTTCATCACTGTGGTTCAAGAAAA
CTACCCGAATCGTCTTGGGGTATTGTTTGTCATCCGTCTTCCTCCAGTTGTCAGAGTTAT
TGCACAGACATTTCTTCAAGTCTTGAAACCAGCTACAAAGCAGAAGTTGCGTTTTGAGGG
AGATTCGTACAAGAAGGCATTGGCGGAGTTCCTGCAGGCTGTGCCAGCGTTTCTGGGCGG
TAAATGCAGCTGCCCGCGATGTGAGAGTCCTCGTGATGATTCAGTGATACAGGCAGGGGA
AGGGAGCAAGAAGCAGCCCCGCTTGGTCAGCGTTGATGACGGGTTACCTGTCACAGACTT
GGACTTCGACTTGGATGAAGAGATCCCATCACCTTATAGCTGCGAGAACGCCATCAGGGC
TGCGATAATCGGCCTGCTGATGGTGTGCATCTTCGTCGCGTTTCTGGCTGGGATGATCGA
CCCTGCATCCGTTCCAGCCAGTGCCTGAGAGCTTGTGGAATAGAGCATGCACGTACATGT
GTTGCTAATTAGGATGCAGGGTGCTGTATTTCTTGGCAGGCTTCTTGTATGTTGTCGTC