Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d034617_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:1:297877088:297882893:-1 gene:Zm00001d034617 gene_biotype:protein_coding transcript_biotype:protein_coding description:histidine acid phosphatase family protein
Sequence

ATGGGCATGGCTGCTCCGCGCGCGCCGCTGCCTCTCCCCCAACTGCTGCTCCTCCTCGTT
GCCGCGCTCCTCGCCGCCGCTCCCCTCCCTAGGGCGGCCAGGGCGGACGAGTTCGACGTC
CGCCGCCACCTCTCCACCGTCACCAGGTATGATGTGGCCAGGGAGTCCAGTAGTGTCATC
TCCATGCCGTCAATCCCAGACGGGTGCCGTGTCATTCACCTCAATTTAGTGGCAAGACAT
GGGACTCGCGCTCCTACCAAGAAGCGCATCAAGGAGCTGGATAGATTGGCAGTTCGACTG
GAAGCCCTTCTGAAAGAGGCAAATCAGGTCCTTGATAGTGATTCTCTGAAGAAAATTCCA
TCCTGGATTAAAGGCTGGGAATCACGCTGGAAGGGTAGGACTAAAGGTGGTGAGCTGATT
AGTGAAGGGGAAGAGGAGCTTTACAATTTAGCTACCAGAATGAGGGAGAGGTTTCAAGAT
CTATTTGATGACGAATATCACCCTGATGTATATTCAATAAGAGCAACCCAGGTTCCTCGA
GCATCAGCTAGTGCAGTGGCATTTGGGTTGGGACTACTTTCTGGGAAAGGAAAGCTTGGA
CAAGGGAAGAACCGAGCCTTTTCTGTTCTGAGTGAGAGTCGTGCAAGTGATATTTGTCTG
AGATTCTTTGACAGCTGTGAGACATACAAGGCATACAGGAAAAGGAAGGAGCCTGATGTA
GAGAAGCAAAAGGAACCAATTCTAGAGCATGTCACAGCTGCACTTGTCAATCGTTATCAC
CTAAAATTTACAACTCGCGATGTTTCTTCCCTCTGGTTTCTTTGTAAGCAGGAAGCATCT
TTGTTGAATACAACAAATCAAGCTTGTGGGCTTTTTAATGAAGCTGAGGTTCGTTTTCTG
GAGTGGACAGATGATTTGGAGGGTTTTGTTCTAAAAGGCTATGGTGAGTCAATTAACTAC
AGGATGGGACTGCCATTGCTCAAGGATGTTGTCCAGTCAATGGAAGAAGCAATCATAGCT
AGAGAAGAAAACCGTGCTGATGGTACGTTTGAAAAGGCAAGGCTCCGATTTGCACATGCA
GAAACTGTTGTTCCTTTTAGCTGCCTTCTTGGTCTTTTTCTTGAAGGTCCAGAAATTGAG
AAGATACAGAGAGAGGAAGCATTGGACCTACCCCCTTTGCCGCCACAGGGAAGAAACTGG
AAGGGCAGTGTTGTTGCGCCTTTTGCTGGTAACAATATGCTGGTTTTATATCAATGTCCA
AGCAAAATTTCGGATGGCAGCACAATCTCTGGAGGCCGAAACAACTCTTACTTAGTTCAA
GTTCTACACAACGAAGTCCCAGTTTCAATGCCTGGGTGCGGCAACAAAGATTTCTGTCCG
TTCGAGGAGTTCAAGGAGAAAATTGTGAAACCGCACCTGAAGCACGACTACAACATGATA
TGCAAGGTCAAATCCCCAGCGGCAAGCGAGGAGCCTGCCTCGTTCGCCTCCAGGGTGTCC
AGTTTCTTCCTAGGACTCCTCTCGCAGAAAGGGTACCGCGGTGTGGGCGCCGAGGGCGTC
AAGACCGAGCTGTAG

Peptide Sequence

PEP ID

Zm00001d034617_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:1:297877088:297882893:-1 gene:Zm00001d034617 transcript:Zm00001d034617_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:histidine acid phosphatase family protein
Sequence

MGMAAPRAPLPLPQLLLLLVAALLAAAPLPRAARADEFDVRRHLSTVTRYDVARESSSVI
SMPSIPDGCRVIHLNLVARHGTRAPTKKRIKELDRLAVRLEALLKEANQVLDSDSLKKIP
SWIKGWESRWKGRTKGGELISEGEEELYNLATRMRERFQDLFDDEYHPDVYSIRATQVPR
ASASAVAFGLGLLSGKGKLGQGKNRAFSVLSESRASDICLRFFDSCETYKAYRKRKEPDV
EKQKEPILEHVTAALVNRYHLKFTTRDVSSLWFLCKQEASLLNTTNQACGLFNEAEVRFL
EWTDDLEGFVLKGYGESINYRMGLPLLKDVVQSMEEAIIAREENRADGTFEKARLRFAHA
ETVVPFSCLLGLFLEGPEIEKIQREEALDLPPLPPQGRNWKGSVVAPFAGNNMLVLYQCP
SKISDGSTISGGRNNSYLVQVLHNEVPVSMPGCGNKDFCPFEEFKEKIVKPHLKHDYNMI
CKVKSPAASEEPASFASRVSSFFLGLLSQKGYRGVGAEGVKTEL

Transcript Sequence

Transcript ID

Zm00001d034617_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:297877088:297882893:-1 gene:Zm00001d034617 gene_biotype:protein_coding transcript_biotype:protein_coding description:histidine acid phosphatase family protein
Sequence

GAGCCCCCACACCCAACCCAACCCAACCGCGCTTTTTGTCACCTGGAAAGGGAAGGCAAG
TCGAGATTCGAGAAGGCAAATCGAATTCGCCATGGGCATGGCTGCTCCGCGCGCGCCGCT
GCCTCTCCCCCAACTGCTGCTCCTCCTCGTTGCCGCGCTCCTCGCCGCCGCTCCCCTCCC
TAGGGCGGCCAGGGCGGACGAGTTCGACGTCCGCCGCCACCTCTCCACCGTCACCAGGTA
TGATGTGGCCAGGGAGTCCAGTAGTGTCATCTCCATGCCGTCAATCCCAGACGGGTGCCG
TGTCATTCACCTCAATTTAGTGGCAAGACATGGGACTCGCGCTCCTACCAAGAAGCGCAT
CAAGGAGCTGGATAGATTGGCAGTTCGACTGGAAGCCCTTCTGAAAGAGGCAAATCAGGT
CCTTGATAGTGATTCTCTGAAGAAAATTCCATCCTGGATTAAAGGCTGGGAATCACGCTG
GAAGGGTAGGACTAAAGGTGGTGAGCTGATTAGTGAAGGGGAAGAGGAGCTTTACAATTT
AGCTACCAGAATGAGGGAGAGGTTTCAAGATCTATTTGATGACGAATATCACCCTGATGT
ATATTCAATAAGAGCAACCCAGGTTCCTCGAGCATCAGCTAGTGCAGTGGCATTTGGGTT
GGGACTACTTTCTGGGAAAGGAAAGCTTGGACAAGGGAAGAACCGAGCCTTTTCTGTTCT
GAGTGAGAGTCGTGCAAGTGATATTTGTCTGAGATTCTTTGACAGCTGTGAGACATACAA
GGCATACAGGAAAAGGAAGGAGCCTGATGTAGAGAAGCAAAAGGAACCAATTCTAGAGCA
TGTCACAGCTGCACTTGTCAATCGTTATCACCTAAAATTTACAACTCGCGATGTTTCTTC
CCTCTGGTTTCTTTGTAAGCAGGAAGCATCTTTGTTGAATACAACAAATCAAGCTTGTGG
GCTTTTTAATGAAGCTGAGGTTCGTTTTCTGGAGTGGACAGATGATTTGGAGGGTTTTGT
TCTAAAAGGCTATGGTGAGTCAATTAACTACAGGATGGGACTGCCATTGCTCAAGGATGT
TGTCCAGTCAATGGAAGAAGCAATCATAGCTAGAGAAGAAAACCGTGCTGATGGTACGTT
TGAAAAGGCAAGGCTCCGATTTGCACATGCAGAAACTGTTGTTCCTTTTAGCTGCCTTCT
TGGTCTTTTTCTTGAAGGTCCAGAAATTGAGAAGATACAGAGAGAGGAAGCATTGGACCT
ACCCCCTTTGCCGCCACAGGGAAGAAACTGGAAGGGCAGTGTTGTTGCGCCTTTTGCTGG
TAACAATATGCTGGTTTTATATCAATGTCCAAGCAAAATTTCGGATGGCAGCACAATCTC
TGGAGGCCGAAACAACTCTTACTTAGTTCAAGTTCTACACAACGAAGTCCCAGTTTCAAT
GCCTGGGTGCGGCAACAAAGATTTCTGTCCGTTCGAGGAGTTCAAGGAGAAAATTGTGAA
ACCGCACCTGAAGCACGACTACAACATGATATGCAAGGTCAAATCCCCAGCGGCAAGCGA
GGAGCCTGCCTCGTTCGCCTCCAGGGTGTCCAGTTTCTTCCTAGGACTCCTCTCGCAGAA
AGGGTACCGCGGTGTGGGCGCCGAGGGCGTCAAGACCGAGCTGTAGGCGTCAAGACCTAG
CTTAGCACGGTGCCGTCTCCTCTCACCGTCTGCGAGCACGATCAGGAACCAGACTAACCC
ATGCACTAACCCGCAGTGTTTTTGTACGGGGCGAGTCGAATGTGTAGGACACCACCACAG
GAGGCGCCAGTTCGGTTGTCTCCAGGGCCAGACGCCTCTGATACTGTAGTAGCAATAACA
TAAATAATAAATGTGTTTCGATTCGGACT