Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d034594_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:1:297407263:297414623:1 gene:Zm00001d034594 gene_biotype:protein_coding transcript_biotype:protein_coding description:BRCA1 C Terminus domain containing protein expressed; Expressed protein; protein
Sequence

ATGTCGATCTGCGGGTACCACTCCCCACGCTTCTCCGAGGATATTACTTGGCTCCCGCAA
TGGCTTCAGCCGTATAGCACGCCGGTGGTTGGCGAGCACCGGAACAACAGTACCGCCGTT
TCATCGCTTTCTTGCCAGAATTGTGCGTTTGTCGGGCACCCTTCGCAGGAGCATCAGGAT
TGTCAGAACGCCACTGATGGTTATAGCGGCTTCATCTTGCACTTGTCAGGAGATGAGGAC
ACGGTGGTTAGTTCACCGGTCAGCAGCAATGTGCTACCTTTCTCTTTGCGTGTGTCTTCA
GAAAGTGCCGCACAACCTTCCCTAGCTGAAGGCAGTGGCAATCCTCAGATACCAAACTCT
GGTACGTGCAATGGTCTATCCGAGAGCCTCTGTGCAGATGGTGAAGAACAAGAGGTCAAT
GCTGTCTCCCAGAATCAGTTTGAGGCTAACGATCCTCAGGTTGATATGCCGACAAAAGTG
GCTCGCAAGGAGATCAGTATACAACCTGATACAATCAGACATAGAAGACATGGTTTCAAT
GGTGGAAAGGTTGATGTTCGAAAGCTTCGTAATGTTGATGTAAATGATGCGATTGAACTA
TCGATTGCTGCATCTGAGGCCATGGTTATTGCAGAGATGATACTTGATGATTCTCAGCCT
GATAAATCGGCTGCAGCTGCTATAGAAGCTGCTCTACACGTGAAAGAAGCCCGGAAGCAA
TTCTACTTTGAGGAGCCACAACATGCTTGTGGATCCTCAGAAGGTGGTCTTGATGAGATT
GATTGGCTTGCAGAATTGGATGAGTCTGAAATGGTTGACGCATACCAAGATGTTGCTCTG
TCCCTCATCCACATTGCTTGCTCATCTCAAGATCATAACACAGGTGATTTGAAGCAACAA
AATTCCCATCCTACTTGTCCCCCATGTGATGCAGACACACACATCTTATGGGATTCTTCT
TCTGAGAGGCAAAATAAAAAATGGAACAGCCAAAATGCTGATAGTGATGACCATGTATCT
GATTCTTTTCCAAACAATCAGTCAGCAGGTGTGCCACCAAATGAACCAACTCCATGCTCT
GCCTCTGTAAAGCAAGCAGCTCTATGTAAAACAATTTCATGTTCAAGAAATAAGAAAACT
GTCCTCCAGGCGTCAACTCAAAACAATGCTGCTTTTCATGGAACCTTGGGAGCTCTTGCA
ACATACCAAAATGTTCATAAGAAAGTTGCAGGAGTTGCTGCACAGACGAATGTTGGTATG
AAGAAGCGTGTAAAAGGTTTGTTTGAGGAAGAAAATAGCTACATTTCTGATTCAATTAGC
ACAGATAGGCGCTGTCCTACTTCTAGAGCATCATCCATGGAAATTGTCGCCTCTTCAAGG
GCATCTTTGTATTGCAAAGCTGAAGGTTTACTTGAAGAAAATCATCATCCTGGAACTGAA
GAGTTGTGTTGCCAAGTAGTATGTTCTAGCTTGTCACAAGTGGATCCTTTATGTTCCATT
GTTCCATGTAGCATATCTTGCGATGAAGGTCCCAGTAGCCAGGCTCCTGTGTGCAAACAG
AGTGAAGGCCATGAAGGTCCCAGTAACCAGGCTCCTTCGTGCAAAAAGAACGAAGGCAAT
GAAGGTCCCACTTGCCTGACACCTGAACGCGAACATAGTAAAAAAAAGGAGGAAGAATTT
ATGCATACCAAAGAATTTCCTATGATGCAATACCTGGATGAGGAGGCTGGTCCATCTTGT
GTGCCTTTAGTTAAGCCAGCAGATTCTAATGTTCCATTCCGGCGAAGGAAATACAGTTCA
CTAAGGCCATTTAGCACAATAGCAACTAAGTCAAACATATTTGGAAGTACATCAAATTCT
AATGCTGATGTTCCAGTTTGTCAGCTTGAGAGATTCACACCCATTGTTCTAAATAAGAAT
GTACAGCGTGTGCAAGCTGCCAAGGAATTCATAGAAAATAGTGCTGGGGCTGAAAATTTG
GAAGATTTCTCTGCAGTTCGGAAGCAGACATATTATCCTCAGGATGGCAGTGAGGATCAA
ATCAGGGAGCTACAGGTCCCACGGGAAGTCTTTCCGCCAACAGAGAATTTGGTTGTTAAA
CAGCACCTTAAAAGAAAAAGGGTCCAATTTTCAGAAGCAAAGCGTAGTAGCAGAAGAACC
AAGAACAATAGAAGGATCCTGACTAAATCAAGATTCAGTCGATCAGATAGCAGAACAGGA
GAGATGCTTGAGACCAGAGAGTACACTGATAACAAAGAAGACACATTTCAAGGAGTAGAG
TTTCTGTTGACTGGATTTCCTAAACAGAAGGAAAAAGAAATTGAGTCCCTAATACGAAAA
TCTGGTGGCTATGTACTTTCTAAAGTGTCACCCTTTCCACTTGATAAAAGAAAGAACATG
GCTGAGTTTCCAAGCTGGAATCCTCCCATAGTACTTTCGCCTAAAAAGGTGTCAACAGCT
AAGTTCTTATATGGCTGTGCTATAGATGCCTGGATATTGAATCCCATTTGGCTCTTCGAT
TCTCTTCAAGCCGGCATCATGCTGCCACCTGGAAAGTATTTAATTCGACAAAGGAATGCC
CAGAAGCATAATTCATCATTCGACCGCCCACTTCACCCAAAATGTAATACATTGATATTT
GATGGAGTAGGATTCTTGATCCACGGCAAAATCAGCTTCTGTTCAAAATTTTCCAACATT
GTCAAGCATGGAGGGGGCCAAGTTTTTATATCTCTTCAGGGATTAGTTCAAAGCTTGAAG
GATGGAAGTACATCGCGTGGAATCATTCTTATTGCAAACGCGGCTAGTGCGTCTCGTCAT
CTAACCCATTGTGGTTTGGAGCATGACATAAATACAGCGACAGCAAGCTGGATCATCGCT
AGTTTATTTTCTGGTAAATTGATTCCATTGAAGAAAGATCGCTGTGCTTCATTTCGCCGA
ATCAAGATGCCATTGTTCCAACAAAAGCAACATGTATTTTACATGAGTCAAGAGATATGA

Peptide Sequence

PEP ID

Zm00001d034594_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:1:297407263:297414623:1 gene:Zm00001d034594 transcript:Zm00001d034594_T018 gene_biotype:protein_coding transcript_biotype:protein_coding description:BRCA1 C Terminus domain containing protein expressed; Expressed protein; protein
Sequence

MSICGYHSPRFSEDITWLPQWLQPYSTPVVGEHRNNSTAVSSLSCQNCAFVGHPSQEHQD
CQNATDGYSGFILHLSGDEDTVVSSPVSSNVLPFSLRVSSESAAQPSLAEGSGNPQIPNS
GTCNGLSESLCADGEEQEVNAVSQNQFEANDPQVDMPTKVARKEISIQPDTIRHRRHGFN
GGKVDVRKLRNVDVNDAIELSIAASEAMVIAEMILDDSQPDKSAAAAIEAALHVKEARKQ
FYFEEPQHACGSSEGGLDEIDWLAELDESEMVDAYQDVALSLIHIACSSQDHNTGDLKQQ
NSHPTCPPCDADTHILWDSSSERQNKKWNSQNADSDDHVSDSFPNNQSAGVPPNEPTPCS
ASVKQAALCKTISCSRNKKTVLQASTQNNAAFHGTLGALATYQNVHKKVAGVAAQTNVGM
KKRVKGLFEEENSYISDSISTDRRCPTSRASSMEIVASSRASLYCKAEGLLEENHHPGTE
ELCCQVVCSSLSQVDPLCSIVPCSISCDEGPSSQAPVCKQSEGHEGPSNQAPSCKKNEGN
EGPTCLTPEREHSKKKEEEFMHTKEFPMMQYLDEEAGPSCVPLVKPADSNVPFRRRKYSS
LRPFSTIATKSNIFGSTSNSNADVPVCQLERFTPIVLNKNVQRVQAAKEFIENSAGAENL
EDFSAVRKQTYYPQDGSEDQIRELQVPREVFPPTENLVVKQHLKRKRVQFSEAKRSSRRT
KNNRRILTKSRFSRSDSRTGEMLETREYTDNKEDTFQGVEFLLTGFPKQKEKEIESLIRK
SGGYVLSKVSPFPLDKRKNMAEFPSWNPPIVLSPKKVSTAKFLYGCAIDAWILNPIWLFD
SLQAGIMLPPGKYLIRQRNAQKHNSSFDRPLHPKCNTLIFDGVGFLIHGKISFCSKFSNI
VKHGGGQVFISLQGLVQSLKDGSTSRGIILIANAASASRHLTHCGLEHDINTATASWIIA
SLFSGKLIPLKKDRCASFRRIKMPLFQQKQHVFYMSQEI

Transcript Sequence

Transcript ID

Zm00001d034594_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:297407263:297414623:1 gene:Zm00001d034594 gene_biotype:protein_coding transcript_biotype:protein_coding description:BRCA1 C Terminus domain containing protein expressed; Expressed protein; protein
Sequence

GTGGATACCAATTCAGAAAAAACGGAGGAAACGAGAAGGCCCTCCTGCCTGCCCCTTGCT
TCCTCCCGAGTCCCGTACTCCCGTGGCGGCGGCGGCGGCTGCTCGACCCGCCCGCCCGGC
CGCCATGTCGATCTGCGGGTACCACTCCCCACGCTTCTCCGAGGATATTACTTGGCTCCC
GCAATGGCTTCAGCCGTATAGCACGCCGGTGGTTGGCGAGCACCGGAACAACAGTACCGC
CGTTTCATCGCTTTCTTGCCAGAATTGTGCGTTTGTCGGGCACCCTTCGCAGGAGCATCA
GGATTGTCAGAACGCCACTGATGGTTATAGCGGCTTCATCTTGCACTTGTCAGGAGATGA
GGACACGGTGGTTAGTTCACCGGTCAGCAGCAATGTGCTACCTTTCTCTTTGCGTGTGTC
TTCAGAAAGTGCCGCACAACCTTCCCTAGCTGAAGGCAGTGGCAATCCTCAGATACCAAA
CTCTGGTACGTGCAATGGTCTATCCGAGAGCCTCTGTGCAGATGGTGAAGAACAAGAGGT
CAATGCTGTCTCCCAGAATCAGTTTGAGGCTAACGATCCTCAGGTTGATATGCCGACAAA
AGTGGCTCGCAAGGAGATCAGTATACAACCTGATACAATCAGACATAGAAGACATGGTTT
CAATGGTGGAAAGGTTGATGTTCGAAAGCTTCGTAATGTTGATGTAAATGATGCGATTGA
ACTATCGATTGCTGCATCTGAGGCCATGGTTATTGCAGAGATGATACTTGATGATTCTCA
GCCTGATAAATCGGCTGCAGCTGCTATAGAAGCTGCTCTACACGTGAAAGAAGCCCGGAA
GCAATTCTACTTTGAGGAGCCACAACATGCTTGTGGATCCTCAGAAGGTGGTCTTGATGA
GATTGATTGGCTTGCAGAATTGGATGAGTCTGAAATGGTTGACGCATACCAAGATGTTGC
TCTGTCCCTCATCCACATTGCTTGCTCATCTCAAGATCATAACACAGGTGATTTGAAGCA
ACAAAATTCCCATCCTACTTGTCCCCCATGTGATGCAGACACACACATCTTATGGGATTC
TTCTTCTGAGAGGCAAAATAAAAAATGGAACAGCCAAAATGCTGATAGTGATGACCATGT
ATCTGATTCTTTTCCAAACAATCAGTCAGCAGGTGTGCCACCAAATGAACCAACTCCATG
CTCTGCCTCTGTAAAGCAAGCAGCTCTATGTAAAACAATTTCATGTTCAAGAAATAAGAA
AACTGTCCTCCAGGCGTCAACTCAAAACAATGCTGCTTTTCATGGAACCTTGGGAGCTCT
TGCAACATACCAAAATGTTCATAAGAAAGTTGCAGGAGTTGCTGCACAGACGAATGTTGG
TATGAAGAAGCGTGTAAAAGGTTTGTTTGAGGAAGAAAATAGCTACATTTCTGATTCAAT
TAGCACAGATAGGCGCTGTCCTACTTCTAGAGCATCATCCATGGAAATTGTCGCCTCTTC
AAGGGCATCTTTGTATTGCAAAGCTGAAGGTTTACTTGAAGAAAATCATCATCCTGGAAC
TGAAGAGTTGTGTTGCCAAGTAGTATGTTCTAGCTTGTCACAAGTGGATCCTTTATGTTC
CATTGTTCCATGTAGCATATCTTGCGATGAAGGTCCCAGTAGCCAGGCTCCTGTGTGCAA
ACAGAGTGAAGGCCATGAAGGTCCCAGTAACCAGGCTCCTTCGTGCAAAAAGAACGAAGG
CAATGAAGGTCCCACTTGCCTGACACCTGAACGCGAACATAGTAAAAAAAAGGAGGAAGA
ATTTATGCATACCAAAGAATTTCCTATGATGCAATACCTGGATGAGGAGGCTGGTCCATC
TTGTGTGCCTTTAGTTAAGCCAGCAGATTCTAATGTTCCATTCCGGCGAAGGAAATACAG
TTCACTAAGGCCATTTAGCACAATAGCAACTAAGTCAAACATATTTGGAAGTACATCAAA
TTCTAATGCTGATGTTCCAGTTTGTCAGCTTGAGAGATTCACACCCATTGTTCTAAATAA
GAATGTACAGCGTGTGCAAGCTGCCAAGGAATTCATAGAAAATAGTGCTGGGGCTGAAAA
TTTGGAAGATTTCTCTGCAGTTCGGAAGCAGACATATTATCCTCAGGATGGCAGTGAGGA
TCAAATCAGGGAGCTACAGGTCCCACGGGAAGTCTTTCCGCCAACAGAGAATTTGGTTGT
TAAACAGCACCTTAAAAGAAAAAGGGTCCAATTTTCAGAAGCAAAGCGTAGTAGCAGAAG
AACCAAGAACAATAGAAGGATCCTGACTAAATCAAGATTCAGTCGATCAGATAGCAGAAC
AGGAGAGATGCTTGAGACCAGAGAGTACACTGATAACAAAGAAGACACATTTCAAGGAGT
AGAGTTTCTGTTGACTGGATTTCCTAAACAGAAGGAAAAAGAAATTGAGTCCCTAATACG
AAAATCTGGTGGCTATGTACTTTCTAAAGTGTCACCCTTTCCACTTGATAAAAGAAAGAA
CATGGCTGAGTTTCCAAGCTGGAATCCTCCCATAGTACTTTCGCCTAAAAAGGTGTCAAC
AGCTAAGTTCTTATATGGCTGTGCTATAGATGCCTGGATATTGAATCCCATTTGGCTCTT
CGATTCTCTTCAAGCCGGCATCATGCTGCCACCTGGAAAGTATTTAATTCGACAAAGGAA
TGCCCAGAAGCATAATTCATCATTCGACCGCCCACTTCACCCAAAATGTAATACATTGAT
ATTTGATGGAGTAGGATTCTTGATCCACGGCAAAATCAGCTTCTGTTCAAAATTTTCCAA
CATTGTCAAGCATGGAGGGGGCCAAGTTTTTATATCTCTTCAGGGATTAGTTCAAAGCTT
GAAGGATGGAAGTACATCGCGTGGAATCATTCTTATTGCAAACGCGGCTAGTGCGTCTCG
TCATCTAACCCATTGTGGTTTGGAGCATGACATAAATACAGCGACAGCAAGCTGGATCAT
CGCTAGTTTATTTTCTGGTAAATTGATTCCATTGAAGAAAGATCGCTGTGCTTCATTTCG
CCGAATCAAGATGCCATTGTTCCAACAAAAGCAACATGTATTTTACATGAGTCAAGAGAT
ATGATCTCTGCTGCATCACATAGCTACAATACCATGGGAATCTCAAATACTTCTCACTGA
AACATGACTGCTATGCATTCACTCTGATGAACCTCTTTTAAAAGAAGAGTTTGTCACAGC
ATTTTTTTGTCACTCAGAAATCCCTCTGTTCAGCACCAAGGTCGTATTCTTTTGTCACTT
CACAATTGAAGGGGAAGCTAGGAAATAGAGCATTCTTCAATCATGGATTTACGGCGCCCT
ATCAGGCTACAGCTGAGAAAGGGTTAGTTACTGCTCGAGGTGAGCAAAGTATTCATCTTC
CAGCTACATCATTCTGGAAACTTGGTTTCTCAACAACATGACAAGTGATCCAACAACATG
ACAACTCTAATCATGGCATCATAACACAATTTTGCAGTCCAGAATCAACTGTAAGCAGTT
CCTTATATGTTGTAGATTGTAGCATGTAAATCGTAAATAGAAATACCAGATGTAATCCCC
CTCCTCACCCAGTTTGTAATCACTAACCTGCGATGCGCTGACTATTAAGCCCTTGTTCGG
TTTCATGGAAATCGAATGGGATTAAGGCCTGGTTCGGTTTGGCCTGGAACGGCCTGGAAG
ATTGCTTGC