Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d034552_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:296067356:296069221:1 gene:Zm00001d034552 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase QRT2
Sequence

ATGGCATCGTCCAGCGGGATGAAGCTTGTGTACATGGCGCCTCTCCTCCCGTTGCTCTTC
ATGTCCGGCGTTCTTGAGGCTGCAGGAGCGGGCAGCTCGGCTGACGGCACGAACGGCAAC
TTGCACGGGTCTGTCACCAGCAGACCTGCCGCCGCGCCCAGGGGAAGATCGCTGCCGGAA
TCGCAGAGCGTGTTCAGCCTCGACCGCTACGGTGCCCGTGGCGACGGGAGGAACGATGAC
ACGCGGGCGCTGGAGATGGCGTGGAAGGCGGCGTGCGCCTCGCCACGGCCGGCCGTCGTG
CTCGTCCCTGCCGGCAGGCGCTACCTGCTGAAGCTCCTCACCCTCCGTGGCCCGTGCAAG
TCCAGTGTCACGCTCACGGTGAAGGGCACCCTGGTTGCATCGCCAAACCGGGCGGATTGG
AGCGACAGTGACAGGAGGCACTGGATCGTGTTCCGAAGCATCGACGAGCTCACTGTCAAC
GGCGGTGGCGCCATCGATGGCAACGGCGAGAAATGGTGGCCTCACTCGTGCAAGATCAAC
AAGGCTCTCCCTTGCAAGGAGGCTCCGACGGCTCTGTCATTCCACTACTGCGTCGGCCTG
AAAGTGGAGGATCTGAAAATTATGAACAGCCAACAGATCCACATGTCAGTCGAGGATTCT
GCAAATGTGCTGCTGGCGCGGTTGTCCATCACAGCGCCTGGCACCAGCCCTAACACTGAC
GGCATCCACATCACTCGCAGCAAAGATGTACGCGTCACAGACTGCAAGATCAAGACAGGG
GACGACTGCATGTCAATCGAGAACGGGACTCACAACCTCCATGTCTCCAAAGTTACCTGT
GGTCCAGGGCATGGGATCAGCATCGGAAGCCTAGGAGACGACAACTCAAGAGCAGAAGTC
TCCGGCATCACCATAGACTCAGTGCAACTACACGGCACAACCAACGGAGCACGCATCAAG
ACGTACCAGGGAGGCAGCGGATACGCCAAGGACATCACGTTCCAAAACATGGTTATGTAC
GACGTCAAGAACCCGATAATCATCGACCAGAACTACTGCGACAGGGCTAAGCCATGCGGA
GAACAAGAGTCAGCGGTGCAGGTCAGCGGCGTCGTCTTCAAGAACATTAGAGGGACGACC
AGTACCAAGGACGCCATCAAGATGAACTGCAGCGAGAACGTCCCATGCCAGGGCATTACC
TTGCAGAACATCGACCTGGAAATGCAGGACGGCAAGGGCAGCACGAGAAGCACATGTAGG
AATGCGAAATGGAGAGAATTTGGGACCGTTCACCCGCAGCCTTGCACTGCCACAGACACA
GAGTAG

Peptide Sequence

PEP ID

Zm00001d034552_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:296067356:296069221:1 gene:Zm00001d034552 transcript:Zm00001d034552_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase QRT2
Sequence

MASSSGMKLVYMAPLLPLLFMSGVLEAAGAGSSADGTNGNLHGSVTSRPAAAPRGRSLPE
SQSVFSLDRYGARGDGRNDDTRALEMAWKAACASPRPAVVLVPAGRRYLLKLLTLRGPCK
SSVTLTVKGTLVASPNRADWSDSDRRHWIVFRSIDELTVNGGGAIDGNGEKWWPHSCKIN
KALPCKEAPTALSFHYCVGLKVEDLKIMNSQQIHMSVEDSANVLLARLSITAPGTSPNTD
GIHITRSKDVRVTDCKIKTGDDCMSIENGTHNLHVSKVTCGPGHGISIGSLGDDNSRAEV
SGITIDSVQLHGTTNGARIKTYQGGSGYAKDITFQNMVMYDVKNPIIIDQNYCDRAKPCG
EQESAVQVSGVVFKNIRGTTSTKDAIKMNCSENVPCQGITLQNIDLEMQDGKGSTRSTCR
NAKWREFGTVHPQPCTATDTE

Transcript Sequence

Transcript ID

Zm00001d034552_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:296067356:296069221:1 gene:Zm00001d034552 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase QRT2
Sequence

CTTACTCACCATCACCAGGTCAGCATCCAATCCAAGCATCCAGCAACCAGCACCAACCTG
AGCAGCTTGCAACAAGAGCTGCAGTATATCTATAAATTCTGTTCTGATCTTGTTCGCTAG
CTTGACTGTTCGAGCCCGGGTTGCAAATAACAACCTGCACTGCAGCGTGATTAGCTCTGC
CAATGGCATCGTCCAGCGGGATGAAGCTTGTGTACATGGCGCCTCTCCTCCCGTTGCTCT
TCATGTCCGGCGTTCTTGAGGCTGCAGGAGCGGGCAGCTCGGCTGACGGCACGAACGGCA
ACTTGCACGGGTCTGTCACCAGCAGACCTGCCGCCGCGCCCAGGGGAAGATCGCTGCCGG
AATCGCAGAGCGTGTTCAGCCTCGACCGCTACGGTGCCCGTGGCGACGGGAGGAACGATG
ACACGCGGGCGCTGGAGATGGCGTGGAAGGCGGCGTGCGCCTCGCCACGGCCGGCCGTCG
TGCTCGTCCCTGCCGGCAGGCGCTACCTGCTGAAGCTCCTCACCCTCCGTGGCCCGTGCA
AGTCCAGTGTCACGCTCACGGTGAAGGGCACCCTGGTTGCATCGCCAAACCGGGCGGATT
GGAGCGACAGTGACAGGAGGCACTGGATCGTGTTCCGAAGCATCGACGAGCTCACTGTCA
ACGGCGGTGGCGCCATCGATGGCAACGGCGAGAAATGGTGGCCTCACTCGTGCAAGATCA
ACAAGGCTCTCCCTTGCAAGGAGGCTCCGACGGCTCTGTCATTCCACTACTGCGTCGGCC
TGAAAGTGGAGGATCTGAAAATTATGAACAGCCAACAGATCCACATGTCAGTCGAGGATT
CTGCAAATGTGCTGCTGGCGCGGTTGTCCATCACAGCGCCTGGCACCAGCCCTAACACTG
ACGGCATCCACATCACTCGCAGCAAAGATGTACGCGTCACAGACTGCAAGATCAAGACAG
GGGACGACTGCATGTCAATCGAGAACGGGACTCACAACCTCCATGTCTCCAAAGTTACCT
GTGGTCCAGGGCATGGGATCAGCATCGGAAGCCTAGGAGACGACAACTCAAGAGCAGAAG
TCTCCGGCATCACCATAGACTCAGTGCAACTACACGGCACAACCAACGGAGCACGCATCA
AGACGTACCAGGGAGGCAGCGGATACGCCAAGGACATCACGTTCCAAAACATGGTTATGT
ACGACGTCAAGAACCCGATAATCATCGACCAGAACTACTGCGACAGGGCTAAGCCATGCG
GAGAACAAGAGTCAGCGGTGCAGGTCAGCGGCGTCGTCTTCAAGAACATTAGAGGGACGA
CCAGTACCAAGGACGCCATCAAGATGAACTGCAGCGAGAACGTCCCATGCCAGGGCATTA
CCTTGCAGAACATCGACCTGGAAATGCAGGACGGCAAGGGCAGCACGAGAAGCACATGTA
GGAATGCGAAATGGAGAGAATTTGGGACCGTTCACCCGCAGCCTTGCACTGCCACAGACA
CAGAGTAGGGGGCAATGGAACTCAGTCGCTTGTGCTTTGTAGCTAGTCTGTACAGAACTA
CAGATGGAGTAAAGGCATACTCATGTATATTTGTTAATTGGTTCATTCATTCATGTATAT
AGACTGTATAGTATTTTGTAGAACGAAATAAAGAAG