Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d034490_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:1:294453594:294461201:1 gene:Zm00001d034490 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cactin
Sequence

ATGGTGGTATGTGAATGGGAGCTAGGTGAGGCTCGGAAAAGAGATGCCCTAGATCGGGCT
AGGGTCCGTGGTGAGGAACCACCACCTGAGGTTCTTGCAGAAGAGAGAGGTTTGCATGCA
AGTATTGAGGGGGATGTAAAAAGTCTCCTGGATGGTAAAACTTCCACAGAGCTTGAAGAT
ATGCAAAGTCAAATTGAGTCCCAAATGCGCTCTGGAACTGCGAAAGTTGTTGAATACTGG
GAGGCTATTCTGAAACGGCTTCATATTTACAAAGCAAAGGCTTGCCTGAGGGAGATACAT
GCTTCTATCCTAAGGAAGCATTTACATCGATTGGAGCATCCTGGTGCTGCTGAACAGGAT
GTGGATTCTGAGAAAGAAGTTGATAATAAACTGGAGGATGAAATGCATGAGGACGAAGAT
GATAAACGATATTCACCTGAGCCTATGCCTCAGCAGACAGATAACGAATTTGAAGAGGCA
GATGGATCCTTTTCTCCACAGCTAATGCATGGCAATGAAGATGAAGATGCAATTGATCCT
GAAGAGGACAAAGCTGAGCTGGACCGAAAACGTGAAGCTGTAGTTTTGGAGCATCAAAGA
AAAGTTCAGGAAGCCATGAAAACAAAGGCAAGAGTACCTGATGAGATGGAGATGAAGGCC
ATAAAAACAATGGGAGCTATGGAGGAAGGAGATGCAGTATTTGGTGCCGGTGCTGAAGTG
AACCTTGATTCACAGGTGTACTGGTGGCACGACAAGTATCGACCAAGAAAGCCCAAGTAC
TTCAATCGGGTGCACACTGGATATGAATGGAATAAATACAACCAGACTCATTATGACCAT
GATAACCCACCACCGAAAATTGTCCAAGGCTACAAGTTCAATATATTTTACCCTGATCTT
GTGGACAAATCGAAAGCACCAACATACAGTATAGAGAAAGATGGAAGCGCCGGAGAGACT
TGCTTCATAAGATTTCACGCTGGACCTCCATACGAGGATATTGCTTTCCGTATTGTGAAC
AAGGAGTGGGAATACTCACACAAGAAGGGGTTCAAGTGTACTTTTGAGCGTGGGATTCTC
CATCTCTATTTCAACTTCAAGCGTTACCGTTACAGGCGCTGA

Peptide Sequence

PEP ID

Zm00001d034490_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:1:294453594:294461201:1 gene:Zm00001d034490 transcript:Zm00001d034490_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cactin
Sequence

MVVCEWELGEARKRDALDRARVRGEEPPPEVLAEERGLHASIEGDVKSLLDGKTSTELED
MQSQIESQMRSGTAKVVEYWEAILKRLHIYKAKACLREIHASILRKHLHRLEHPGAAEQD
VDSEKEVDNKLEDEMHEDEDDKRYSPEPMPQQTDNEFEEADGSFSPQLMHGNEDEDAIDP
EEDKAELDRKREAVVLEHQRKVQEAMKTKARVPDEMEMKAIKTMGAMEEGDAVFGAGAEV
NLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDL
VDKSKAPTYSIEKDGSAGETCFIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGIL
HLYFNFKRYRYRR

Transcript Sequence

Transcript ID

Zm00001d034490_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:294453594:294461201:1 gene:Zm00001d034490 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cactin
Sequence

GCACCGCGACAGCGAGGGCCGGCAGCGGTCGTCGTCGTCGCGGCGGCGGCGCAGCCCGTC
CCCGTCCGACTCGGACGCCGCCTCCTCCGATTACAGCGGCTCCCCCCGACGGAGCCGTGG
ACGCCACCGCCATAGGAGCCGCCGCCGGAGGGACACTCCGTCCACCTCCAGCGACGCGAG
CGGCAGCGGGAGCGAGGAGCGGCGGCCGGAGGCGCCGGAATGTCACCGAGGAGCAGATCA
TTGAGTACATGGCGAAGAAGGCGCAGAAGAAGGCAGAGAAGGTGGCGAAGAAGCTGAAAG
CGAATTCGGTTTCAGGCTACTCCAACGATTCAAACCCCTTTGGTGATCCCAACCTGACAG
AGAAGTTTGTGTGGCGAAAGAAGATAGAGCATGATGTATCTCAGGGACAGAAGGTGGACT
TTTCTGTCAAATCCGAGAAGAAGAAACAGCTAGAAAGAATGCAAGACAGGCCTGGCGCAG
TGGTGAGATGACTTTCCACTAAGCCAAAGATGTAGGCTGAAATAGAGAAGGTTAAGAAAA
GAAGGGAAGAAAGAGCTATTGAAAAGGCACAGCACGAAGAGGAAATGGCGTTAATAGCTA
GAGAAAGAGCACGTGCAGAGTTTCAAGACTGGGAGAAGAAGGAGGAAGAGTTTCATTTTG
ACCAAAGCAAGGTCAGGTCTGAGATCAGGTTGCGGGAGGGGCGTACAAAGCCTATTGATG
TTCTCCTTAAGAATCTTAGTTTCTCAGATGAATTTGACATTGAGTTAAATGAGCCTTATC
TGGTGTTCAAGGGATTAACAGTGAAAGAAATGGAAGAGCTATGTGATGACATTAAGATGC
ATCTTGATCTGGACAGGGAAAGCCAAACAAATGTTAAGTACTGGCACTCATGGTGGTATG
TGAATGGGAGCTAGGTGAGGCTCGGAAAAGAGATGCCCTAGATCGGGCTAGGGTCCGTGG
TGAGGAACCACCACCTGAGGTTCTTGCAGAAGAGAGAGGTTTGCATGCAAGTATTGAGGG
GGATGTAAAAAGTCTCCTGGATGGTAAAACTTCCACAGAGCTTGAAGATATGCAAAGTCA
AATTGAGTCCCAAATGCGCTCTGGAACTGCGAAAGTTGTTGAATACTGGGAGGCTATTCT
GAAACGGCTTCATATTTACAAAGCAAAGGCTTGCCTGAGGGAGATACATGCTTCTATCCT
AAGGAAGCATTTACATCGATTGGAGCATCCTGGTGCTGCTGAACAGGATGTGGATTCTGA
GAAAGAAGTTGATAATAAACTGGAGGATGAAATGCATGAGGACGAAGATGATAAACGATA
TTCACCTGAGCCTATGCCTCAGCAGACAGATAACGAATTTGAAGAGGCAGATGGATCCTT
TTCTCCACAGCTAATGCATGGCAATGAAGATGAAGATGCAATTGATCCTGAAGAGGACAA
AGCTGAGCTGGACCGAAAACGTGAAGCTGTAGTTTTGGAGCATCAAAGAAAAGTTCAGGA
AGCCATGAAAACAAAGGCAAGAGTACCTGATGAGATGGAGATGAAGGCCATAAAAACAAT
GGGAGCTATGGAGGAAGGAGATGCAGTATTTGGTGCCGGTGCTGAAGTGAACCTTGATTC
ACAGGTGTACTGGTGGCACGACAAGTATCGACCAAGAAAGCCCAAGTACTTCAATCGGGT
GCACACTGGATATGAATGGAATAAATACAACCAGACTCATTATGACCATGATAACCCACC
ACCGAAAATTGTCCAAGGCTACAAGTTCAATATATTTTACCCTGATCTTGTGGACAAATC
GAAAGCACCAACATACAGTATAGAGAAAGATGGAAGCGCCGGAGAGACTTGCTTCATAAG
ATTTCACGCTGGACCTCCATACGAGGATATTGCTTTCCGTATTGTGAACAAGGAGTGGGA
ATACTCACACAAGAAGGGGTTCAAGTGTACTTTTGAGCGTGGGATTCTCCATCTCTATTT
CAACTTCAAGCGTTACCGTTACAGGCGCTGAAATGGCTCAAGAGGCAGGGGAAAACTGGA
TCGATTGGACTGGTGCGTCATGATTCTGCTGTATGCTGTGGCATGGATACCAGTCGAGTA
TGTATCTTCAGTATAATTAGGTACTATGCTAAATGGGAACACACTTTTTGGTTTTACTGA
CTGATTCCCCCCTTTTTTGAGGTTGTACAATAATACAGCATAGCAAGCTGATAGTTTTCT
AACAAACTAGCATGTAGTCTGTGCTAACGCTAAGATCTCGGTAATGAGAGGGGTTGATGG
CGGTGG