Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d034428_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:1:292776051:292778219:1 gene:Zm00001d034428 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pentatricopeptide repeat78 description:Pentatricopeptide repeat 78 [Source:UniProtKB/TrEMBL;Acc:A0A096R0S2]
Sequence	ATGGCGCTGAAGGTTGCGTATCGCATACGCTTTGCGAGATGGCACCTGCTATCAGGCAGA CTCATGTACTGTTCGTGCCCAGATTCGCCCTCCGCGCGGGCTTCTGCCGAGAGAGCAAGT TCTTCCGAGTTTGATTCTGCGATCCGGTCACTCAAGGACAGTCTCCGGCCAGAGAGTCTA GCCCGGATTCTCGATTCCACGTCCGATTCGAGCTTGGCACTTAGGATCTTCAGATGGGCT TCGCATCAGAGGTATAACATCCAGACGGTTGATACCTACAGCTGTATGATCTCCAGGCTT ACTGTTGTGGAAAATCGTGATGAGATGGACAGCCTCCTCAGTGAGATGGTCAGGCTGAGG GTTCCTGCGCTGGAGCAGGCCCTTAATAAATTAGTTGAGTCCCTGAGCAGTAAGAACCGA TGTGATGAAGCTTTGCTGGTAATACAGCATGCTAGATCTGCGAAGCTTAAGTTGTCAGTC TCAGCTTGCAACGGAGTGCTGCATGGTATGGTCAGGCAAGGAAGGGGTTTGCGGTTGTTC ATGCTTGCGTACACGGAGATTATCAAGGCGGGAGTCCTCCCTGATGTGGAGGCATTGAAT TTTCTGATCCAGGCTTTGTGTGAGTCTGGTCGTTTAGATCTGGCACTGATTCAGTTTGAC AGGATGAACAAGAAGAGGTGTACTCCTAATAGTCATACGTTTGAGATACTGATCACAGCA CTTTGTTTCCACAGCAGAGCAGATGAAGCGGTCAAGCTCTTTGATAAGATGCTGCAACTT AGATGCTCCCCTGATAGCAGCTTCCATGCTCAAGTGATGCCCCTGTTTTGCAAGTTCAGT AAAGTTAAGGAGGTGATTACGTTGCATCGAATAATGAAAGAAGGCAACATTCAGTTGAGT CTGCAGTTGTACAGTGCCTTGGTTAGATGTTTATGTGAGAATGAACTACTGGATGACGCT ACCATAGTGTTCAAAGAGATGGTAGCATCAGGTCATGCTCCAATGGCAATTACATATGTG GACATGATAAATTGCTACTGTACAAAATCCAAGTTCCACAACGCTATGATCTTTCTAGAG GAAAATGGTGTCACTGAATTAGAACCATATAATGTGCTCCTGACATGGTTGTGTAGAAAT GACAGGCTGCAGGATTCAGTAAACTATCTTGAGAAATTGCACAGCAGAGGTTTTGTTGAT TGTGAGTCATGGAACATTGTTATAACTCAGTTCTGCAATGAAGGAAACATCAGAAGAGCA TTTGAGCTCATTGGTAGAATGGTTGTTTCTTCATTTGCACCAGATAAGACTACCTATTCT GCTGTTATATCTTGTTACTGTCGATTAGGATCTTACATAGATGCCTTGAGTATGTTCAGA AGGGTAAGTATTAGCAACATGTCTTTGAATTCGGAATCTTTCTCACAGCTTGTAGAGGTT TTGTGTCACTCAAAGAGGATCAAAGAAGCTATCGAAGTTTTTAAATATCACTATAATAGA GGTTGCAGTCTGACAAACAAGTCACTTGATATGCTAATTCAAGGGAGTTGCTTGTCTGGA AAGATTCAAGAAGCAGTCAAATTGCGCACGTTGGCTGTTTCTGTTTGCACAGGCACTTTT TGTACATTCTCCACTTATGACATAATTATCCAAGCACTGTTCCATTTGAAGGAGGGGAAA CATGTATTGGCTCTCTTTGCACAAATGTTGATGGAAGGTTGTCCATTGGATGGGTATGCA TACAATATTCTGTTGCGCTCTTTCCTCACCAAGGAAACAATTATTGAGGCTGCTATCTTG TTCAACAGAATGGTTAACCATTCCTTTTTTCCTGACCAAGAGACGTTTGAATTATTAGTC AATGATATGGCCTTGTTTTCTTTTCTTAATATGGTTGCACAAAGTTTACTGAAAGTGGTA GATGCAAGTGGAACAGTGAGCCCTAGAATGTATAACATTATTATTTACGGACTTATTAAA GAAGGCTTCAAGAGTGAGGCATGCAAGTTTCTAGACCAAATGCTGGAAAAGGGGTGGGTG CCTGATTCAAGGACACATCGTGTCTTGGTCGGCAGCTCTGATCTGGTGGAGGCTAGAGAA CTTGTTGAAGCCTACCAGACAGTGGATGGTGATAATGTGGCCAACATATTGTTGGAAGGA CTAGATTGA

Peptide Sequence

PEP ID	Zm00001d034428_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:1:292776051:292778219:1 gene:Zm00001d034428 transcript:Zm00001d034428_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pentatricopeptide repeat78 description:Pentatricopeptide repeat 78 [Source:UniProtKB/TrEMBL;Acc:A0A096R0S2]
Sequence	MALKVAYRIRFARWHLLSGRLMYCSCPDSPSARASAERASSSEFDSAIRSLKDSLRPESL ARILDSTSDSSLALRIFRWASHQRYNIQTVDTYSCMISRLTVVENRDEMDSLLSEMVRLR VPALEQALNKLVESLSSKNRCDEALLVIQHARSAKLKLSVSACNGVLHGMVRQGRGLRLF MLAYTEIIKAGVLPDVEALNFLIQALCESGRLDLALIQFDRMNKKRCTPNSHTFEILITA LCFHSRADEAVKLFDKMLQLRCSPDSSFHAQVMPLFCKFSKVKEVITLHRIMKEGNIQLS LQLYSALVRCLCENELLDDATIVFKEMVASGHAPMAITYVDMINCYCTKSKFHNAMIFLE ENGVTELEPYNVLLTWLCRNDRLQDSVNYLEKLHSRGFVDCESWNIVITQFCNEGNIRRA FELIGRMVVSSFAPDKTTYSAVISCYCRLGSYIDALSMFRRVSISNMSLNSESFSQLVEV LCHSKRIKEAIEVFKYHYNRGCSLTNKSLDMLIQGSCLSGKIQEAVKLRTLAVSVCTGTF CTFSTYDIIIQALFHLKEGKHVLALFAQMLMEGCPLDGYAYNILLRSFLTKETIIEAAIL FNRMVNHSFFPDQETFELLVNDMALFSFLNMVAQSLLKVVDASGTVSPRMYNIIIYGLIK EGFKSEACKFLDQMLEKGWVPDSRTHRVLVGSSDLVEARELVEAYQTVDGDNVANILLEG LD

Transcript Sequence

Transcript ID	Zm00001d034428_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:292776051:292778219:1 gene:Zm00001d034428 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pentatricopeptide repeat78 description:Pentatricopeptide repeat 78 [Source:UniProtKB/TrEMBL;Acc:A0A096R0S2]
Sequence	ATGGCGCTGAAGGTTGCGTATCGCATACGCTTTGCGAGATGGCACCTGCTATCAGGCAGA CTCATGTACTGTTCGTGCCCAGATTCGCCCTCCGCGCGGGCTTCTGCCGAGAGAGCAAGT TCTTCCGAGTTTGATTCTGCGATCCGGTCACTCAAGGACAGTCTCCGGCCAGAGAGTCTA GCCCGGATTCTCGATTCCACGTCCGATTCGAGCTTGGCACTTAGGATCTTCAGATGGGCT TCGCATCAGAGGTATAACATCCAGACGGTTGATACCTACAGCTGTATGATCTCCAGGCTT ACTGTTGTGGAAAATCGTGATGAGATGGACAGCCTCCTCAGTGAGATGGTCAGGCTGAGG GTTCCTGCGCTGGAGCAGGCCCTTAATAAATTAGTTGAGTCCCTGAGCAGTAAGAACCGA TGTGATGAAGCTTTGCTGGTAATACAGCATGCTAGATCTGCGAAGCTTAAGTTGTCAGTC TCAGCTTGCAACGGAGTGCTGCATGGTATGGTCAGGCAAGGAAGGGGTTTGCGGTTGTTC ATGCTTGCGTACACGGAGATTATCAAGGCGGGAGTCCTCCCTGATGTGGAGGCATTGAAT TTTCTGATCCAGGCTTTGTGTGAGTCTGGTCGTTTAGATCTGGCACTGATTCAGTTTGAC AGGATGAACAAGAAGAGGTGTACTCCTAATAGTCATACGTTTGAGATACTGATCACAGCA CTTTGTTTCCACAGCAGAGCAGATGAAGCGGTCAAGCTCTTTGATAAGATGCTGCAACTT AGATGCTCCCCTGATAGCAGCTTCCATGCTCAAGTGATGCCCCTGTTTTGCAAGTTCAGT AAAGTTAAGGAGGTGATTACGTTGCATCGAATAATGAAAGAAGGCAACATTCAGTTGAGT CTGCAGTTGTACAGTGCCTTGGTTAGATGTTTATGTGAGAATGAACTACTGGATGACGCT ACCATAGTGTTCAAAGAGATGGTAGCATCAGGTCATGCTCCAATGGCAATTACATATGTG GACATGATAAATTGCTACTGTACAAAATCCAAGTTCCACAACGCTATGATCTTTCTAGAG GAAAATGGTGTCACTGAATTAGAACCATATAATGTGCTCCTGACATGGTTGTGTAGAAAT GACAGGCTGCAGGATTCAGTAAACTATCTTGAGAAATTGCACAGCAGAGGTTTTGTTGAT TGTGAGTCATGGAACATTGTTATAACTCAGTTCTGCAATGAAGGAAACATCAGAAGAGCA TTTGAGCTCATTGGTAGAATGGTTGTTTCTTCATTTGCACCAGATAAGACTACCTATTCT GCTGTTATATCTTGTTACTGTCGATTAGGATCTTACATAGATGCCTTGAGTATGTTCAGA AGGGTAAGTATTAGCAACATGTCTTTGAATTCGGAATCTTTCTCACAGCTTGTAGAGGTT TTGTGTCACTCAAAGAGGATCAAAGAAGCTATCGAAGTTTTTAAATATCACTATAATAGA GGTTGCAGTCTGACAAACAAGTCACTTGATATGCTAATTCAAGGGAGTTGCTTGTCTGGA AAGATTCAAGAAGCAGTCAAATTGCGCACGTTGGCTGTTTCTGTTTGCACAGGCACTTTT TGTACATTCTCCACTTATGACATAATTATCCAAGCACTGTTCCATTTGAAGGAGGGGAAA CATGTATTGGCTCTCTTTGCACAAATGTTGATGGAAGGTTGTCCATTGGATGGGTATGCA TACAATATTCTGTTGCGCTCTTTCCTCACCAAGGAAACAATTATTGAGGCTGCTATCTTG TTCAACAGAATGGTTAACCATTCCTTTTTTCCTGACCAAGAGACGTTTGAATTATTAGTC AATGATATGGCCTTGTTTTCTTTTCTTAATATGGTTGCACAAAGTTTACTGAAAGTGGTA GATGCAAGTGGAACAGTGAGCCCTAGAATGTATAACATTATTATTTACGGACTTATTAAA GAAGGCTTCAAGAGTGAGGCATGCAAGTTTCTAGACCAAATGCTGGAAAAGGGGTGGGTG CCTGATTCAAGGACACATCGTGTCTTGGTCGGCAGCTCTGATCTGGTGGAGGCTAGAGAA CTTGTTGAAGCCTACCAGACAGTGGATGGTGATAATGTGGCCAACATATTGTTGGAAGGA CTAGATTGA