Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d034388_T047
CDS Infomation

cds chromosome:B73_RefGen_v4:1:291663974:291668317:-1 gene:Zm00001d034388 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aldehyde oxidase4 description: aldehyde oxidase4
Sequence

ATGTGCATGTCCATCTTCTCCGCGCTTGTCAAGGCTGACAAGGCGGCCGACCGCCCAGCC
CCGCCTGCCGGCTTCTCCAAGCTCACTTCCTCCGAGGCTGAGAAGGCCGTCTCCGGCAAC
CTGTGCCGGTGCACCGGGTACAGGCCCATCGTCGACGCCTGTAAGAGCTTCGCGGCCGAC
GTTGATCTCGAGGACCTGGGCCTCAACTGCTTCTGGAAGAAAGGTGACGAGCCTGCAGAT
GTCAGCAAGCTGCCAGGCTACGACAGTGGTGCCGTCTGCACTTTCCCCGAGTTTCTCAAA
TCTGAGATCAAGTCCTCAGTCGAGCAGGTTAACGGCGCTCCAGTTCCTGTTTCTGACGAC
GGCTGGTACCGTCCCAAGAGCATTGACGAGCTTCACAGGCTGTTTCAATCTGAGTCCTTC
GATGAAAATTCTGTCAAGATAGTAGCTTCAAACACTGGGTCCGGGGTGTACAAGGATCAA
GACCTTCATGACAAGTACATTGACATCAAAGAGGTCCCAGAGCTTTCAGTCATCAACAGA
AGCAACAAGGGGGTCGAGCTTGGATCAGTTGTGTCCATCTCTAAAGCGATTGAGGTGCTG
TCAGATGGAAATGTGGTTTTCGAAAAGATTGCAGATCACCTGAACAAAGTGGCCTCTCCG
TTTGTTCGGAACACAGCAACCATTGGTGGAAACATCATTATGGCGCAACGGTTGCAATTT
CCCTCGGACATTGTGACTGTACTACTAGCTGCAGGTACAACTGTCACTATCCAGGTGGTT
TCCAAAAGGCTTTGCCTCACCTTGGAGGAGTTCTTGCAGCAGCCTCCATGTGATTCTAGA
ACCCTGTTGCTGAGTATATTTATCCCCTATTGGAGTTCAGATGGCATCACCTTTGAGACC
TTCCGAGCAGCACCTCGTCCACTTGGCAATGCTGTCGCATACGTCAATTCAGCTTTCTTG
GCAAGGACTTCAGTGGATGCAGCATCAAGGGACCATCTCATTGAGGATACATGTTTGGTG
TTCGGTGCATATGGGACTGATCATGCTATTAGAGCTAGCAAGGTTGAGGATTACCTGAAG
GGCAAAACAGTGAGCTCGACTGTTATACTTGAAGCTGTTCGGTTGCTTAAAGCGACTGTC
AAACCATCAGAAGGCACAACACATCCTGAGTATAGAATCAGCTTGGCCGTCAGCTTCTTG
TTTACCTTCCTATCTTCCCTTGTCAACAATGAGTCAACAAAGGTTAATGGTCCCAACGGG
TCATGTAGTAATGGAGCCACAAACGGTGCCCTTGAGCACTCACCAGAGAAGCATCTTAAG
TTTGACAGCAACGATTTGCCGATACGGTCAAGACAAGAAATATTTTTAACTGATGAATAC
AAGCCAGTTGGAAAACCAATTAAGAAAGCAGGTGCAGAGATCCAAGCTTCAGGGGAAGCT
GTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATGGAGCATTTATCTACAGC
ACCCACCCTCATGCCCATGTAAAGGCTATCAACTTTAAATCATCTTTGGCCTCGCAGAAG
GTCATCACAGTTATCACCGCAAAGGATATTCCCAGTGGTGGACAAAATATTGGTTCCACC
TTCCCGATGATGGGAGACGAAGCACTTTTTGCAGATCCAGTTACTGAATTTGCTGGTCAG
AATATTGGTGTTGTGATTGCTGAAACACAGAAGTATGCCTACATGGCTGCAAAGCAAGCC
ATTATTGAGTATAGCACAGAAAATCTGCAGCCACCAATTCTGACGATAGAAGATGCGATC
CAACGAAACAGCTACTTCCAAGTCCCCCCATTTTTAGCTCCTAAGCCAGTTGGTGATTAC
AACAAAGGGATGGCTGAAGCTGATCAAAAGATTCTATCAGCGGAGGTAAAACTTGAATCC
CAATACTATTTCTACATGGAGACACAAGTGGCGCTAGCTATTCCTGATGAAGATAACTGT
ATAACCATCTATTCTTCGACACAAATTCCCGAGGTCACACAAAATGTGGTTGCAAAGTGC
CTTGGCATTCCATTTCACAATGTCCGCCTCATCAGCAGAAGAGTCGGAGGAGGCTTTGGT
GGAAAGGCAATGAAAGCAATACATGTAAGTCTTAAAAATAACTAG

Peptide Sequence

PEP ID

Zm00001d034388_P047
PEP Infomation

pep chromosome:B73_RefGen_v4:1:291663974:291668317:-1 gene:Zm00001d034388 transcript:Zm00001d034388_T047 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aldehyde oxidase4 description: aldehyde oxidase4
Sequence

MCMSIFSALVKADKAADRPAPPAGFSKLTSSEAEKAVSGNLCRCTGYRPIVDACKSFAAD
VDLEDLGLNCFWKKGDEPADVSKLPGYDSGAVCTFPEFLKSEIKSSVEQVNGAPVPVSDD
GWYRPKSIDELHRLFQSESFDENSVKIVASNTGSGVYKDQDLHDKYIDIKEVPELSVINR
SNKGVELGSVVSISKAIEVLSDGNVVFEKIADHLNKVASPFVRNTATIGGNIIMAQRLQF
PSDIVTVLLAAGTTVTIQVVSKRLCLTLEEFLQQPPCDSRTLLLSIFIPYWSSDGITFET
FRAAPRPLGNAVAYVNSAFLARTSVDAASRDHLIEDTCLVFGAYGTDHAIRASKVEDYLK
GKTVSSTVILEAVRLLKATVKPSEGTTHPEYRISLAVSFLFTFLSSLVNNESTKVNGPNG
SCSNGATNGALEHSPEKHLKFDSNDLPIRSRQEIFLTDEYKPVGKPIKKAGAEIQASGEA
VYVDDIPAPKDCLYGAFIYSTHPHAHVKAINFKSSLASQKVITVITAKDIPSGGQNIGST
FPMMGDEALFADPVTEFAGQNIGVVIAETQKYAYMAAKQAIIEYSTENLQPPILTIEDAI
QRNSYFQVPPFLAPKPVGDYNKGMAEADQKILSAEVKLESQYYFYMETQVALAIPDEDNC
ITIYSSTQIPEVTQNVVAKCLGIPFHNVRLISRRVGGGFGGKAMKAIHVSLKNN

Transcript Sequence

Transcript ID

Zm00001d034388_T047
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:291663974:291668317:-1 gene:Zm00001d034388 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aldehyde oxidase4 description: aldehyde oxidase4
Sequence

AATGACGCACACATTTTCTGCGTGCTTATTAGGGGGAGACAAGGAAGCTAACCTCTTGCC
GTTTTTTGCAACTTTACGTCGTTACAGGTGGCTGCGGTGCATGTGTCGTCCTTGTCTCCA
AGTATGACCCGGCCACCGACGAGGTGACCGAGTTCTCAGCGAGCTCCTGCCTGACGCTTC
TCCACAGCGTGGACCGCTGCTCGGTGACCACCAGCGAGGGCATTGGCAACACCAAGGATG
GCTACCACCCTGTGCAGCAGCGCCTCTCCGGCTTCCACGCCTCCCAGTGCGGGTTCTGCA
CGCCCGGCATGTGCATGTCCATCTTCTCCGCGCTTGTCAAGGCTGACAAGGCGGCCGACC
GCCCAGCCCCGCCTGCCGGCTTCTCCAAGCTCACTTCCTCCGAGGCTGAGAAGGCCGTCT
CCGGCAACCTGTGCCGGTGCACCGGGTACAGGCCCATCGTCGACGCCTGTAAGAGCTTCG
CGGCCGACGTTGATCTCGAGGACCTGGGCCTCAACTGCTTCTGGAAGAAAGGTGACGAGC
CTGCAGATGTCAGCAAGCTGCCAGGCTACGACAGTGGTGCCGTCTGCACTTTCCCCGAGT
TTCTCAAATCTGAGATCAAGTCCTCAGTCGAGCAGGTTAACGGCGCTCCAGTTCCTGTTT
CTGACGACGGCTGGTACCGTCCCAAGAGCATTGACGAGCTTCACAGGCTGTTTCAATCTG
AGTCCTTCGATGAAAATTCTGTCAAGATAGTAGCTTCAAACACTGGGTCCGGGGTGTACA
AGGATCAAGACCTTCATGACAAGTACATTGACATCAAAGAGGTCCCAGAGCTTTCAGTCA
TCAACAGAAGCAACAAGGGGGTCGAGCTTGGATCAGTTGTGTCCATCTCTAAAGCGATTG
AGGTGCTGTCAGATGGAAATGTGGTTTTCGAAAAGATTGCAGATCACCTGAACAAAGTGG
CCTCTCCGTTTGTTCGGAACACAGCAACCATTGGTGGAAACATCATTATGGCGCAACGGT
TGCAATTTCCCTCGGACATTGTGACTGTACTACTAGCTGCAGGTACAACTGTCACTATCC
AGGTGGTTTCCAAAAGGCTTTGCCTCACCTTGGAGGAGTTCTTGCAGCAGCCTCCATGTG
ATTCTAGAACCCTGTTGCTGAGTATATTTATCCCCTATTGGAGTTCAGATGGCATCACCT
TTGAGACCTTCCGAGCAGCACCTCGTCCACTTGGCAATGCTGTCGCATACGTCAATTCAG
CTTTCTTGGCAAGGACTTCAGTGGATGCAGCATCAAGGGACCATCTCATTGAGGATACAT
GTTTGGTGTTCGGTGCATATGGGACTGATCATGCTATTAGAGCTAGCAAGGTTGAGGATT
ACCTGAAGGGCAAAACAGTGAGCTCGACTGTTATACTTGAAGCTGTTCGGTTGCTTAAAG
CGACTGTCAAACCATCAGAAGGCACAACACATCCTGAGTATAGAATCAGCTTGGCCGTCA
GCTTCTTGTTTACCTTCCTATCTTCCCTTGTCAACAATGAGTCAACAAAGGTTAATGGTC
CCAACGGGTCATGTAGTAATGGAGCCACAAACGGTGCCCTTGAGCACTCACCAGAGAAGC
ATCTTAAGTTTGACAGCAACGATTTGCCGATACGGTCAAGACAAGAAATATTTTTAACTG
ATGAATACAAGCCAGTTGGAAAACCAATTAAGAAAGCAGGTGCAGAGATCCAAGCTTCAG
GGGAAGCTGTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATGGAGCATTTA
TCTACAGCACCCACCCTCATGCCCATGTAAAGGCTATCAACTTTAAATCATCTTTGGCCT
CGCAGAAGGTCATCACAGTTATCACCGCAAAGGATATTCCCAGTGGTGGACAAAATATTG
GTTCCACCTTCCCGATGATGGGAGACGAAGCACTTTTTGCAGATCCAGTTACTGAATTTG
CTGGTCAGAATATTGGTGTTGTGATTGCTGAAACACAGAAGTATGCCTACATGGCTGCAA
AGCAAGCCATTATTGAGTATAGCACAGAAAATCTGCAGCCACCAATTCTGACGATAGAAG
ATGCGATCCAACGAAACAGCTACTTCCAAGTCCCCCCATTTTTAGCTCCTAAGCCAGTTG
GTGATTACAACAAAGGGATGGCTGAAGCTGATCAAAAGATTCTATCAGCGGAGGTAAAAC
TTGAATCCCAATACTATTTCTACATGGAGACACAAGTGGCGCTAGCTATTCCTGATGAAG
ATAACTGTATAACCATCTATTCTTCGACACAAATTCCCGAGGTCACACAAAATGTGGTTG
CAAAGTGCCTTGGCATTCCATTTCACAATGTCCGCCTCATCAGCAGAAGAGTCGGAGGAG
GCTTTGGTGGAAAGGCAATGAAAGCAATACATGTAAGTCTTAAAAATAACTAGTGCTTAT
GCTCAACTTTTCTATTTTCAGTTACGAATGTAATGACTGGATTTCCTCTGTCAGGTTGCA
TGTGCATGTGCGGTTGCTGCATTCAAGCTGCGGCGTCCAGTTCGGATGTACCTGGATCGC
AAGACAGACATGATAATGGCAGGCGGTCGGCATCCTATGAAGGTGAAGTACTCTGTTGGG
TTCAAGTCAGATGGCAAGATCACAGCCTTGCACATTGATCTTGGGATCAATGCTGGAATA
TCACCGGATGTGAGCCCAATGTTGCCACCTGCTATCATAGGTGCTCTCAAAAAGTACAAC
TGGGGCAATCTTGCATTTGATACCAAGGTCTGCAAGACAAATGTCTCATCAAAATCAGCA
ATGAGGGGTCCTGGAGATGTTCAGGGCTCTTTCATCGCTGAAGCCATCATTGAGCATGTT
GCCTCAGCACTTTCAGTCGACACTAACACCATAAGGAGGAAGAACCTTCATGACTTTGAG
AGCCTTGTGGTGTTCTTCGAAGATGCTGCAGGTGAAGCTTCTACCTACAGCTTAGTTACG
ATGTTCGATAAGCTGGCCTCCTCTCCAGAATACCAGCGCCGAGCTGCAATGGTGGAGCAC
TTCAACAGAAGCAACAAGTGGAAGAAGCGTGGCATTTCTTGTGTGCCAATTACATATGAG
GTCAATCTTCGGCCAACTCCAGGCAAGGTGTCTATCATGAATGATGGTTCCATCGTTGTT
GAGGTCGGAGGGGTTGAGATAGGCCAAGGGTTGTGGACAAAAGTGAAGCAGATGACGGCA
TTCGGATTGGGACAGCTGTGCCCTGACGGCGGCGAAAGCCTCCTGGACAAGGTCCGGGTC
ATCCAGGCCGATACATTGAGCATGATCCAGGGAGGGTTCACCGGTGGGAGCACCACTTCT
GAAACTAGCTGCGAAGCTGTTCGACAGTCGTGTGTTGCGCTGGTTGAGAGACTGAAGCCC
ATCAAGGAGAATCTGGAAGCTGAGGCAGGCACAGTGGAATGGAGTTCCTTGATTGCTCAG
GCAAGTATGGCGAGTGTGAACTTATCGGCACATGCATACTGGACCCCAGATCCAACTTTC
AGAAGCTATTTAAACTACGGAGCTGGCATTAGTGAGGTACCCCTTATCCAAACTGCATGA
AAAGCACAGTTAACAAGCCGAATTGTTGGAGGATGCAGCTTCAATCCTGC