Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d034038_T009
CDS Infomation	cds chromosome:B73_RefGen_v4:1:281979188:281983956:-1 gene:Zm00001d034038 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeC1 description:Phytochrome
Sequence	ATGTCGTTGCCGTCGAACAACCGGAGGACGTGCTCCCGGAGCAGCTCTGCGCGGTCCAAG CACAGCGCGCGGGTGGTGGCACAGACGCCCGTGGACGCGCAGCTGCACGCCGAGTTCGAG GGCTCCCAGCGCCACTTCGACTACTCCTCGTCGGTGGGCGCCGCCAACCGCCCGTCGGCA AGCACCAGCACCGTCTCCACCTACCTCCAGAACATGCAGCGGGGCCGCTACATCCAGCCC TTCGGCTGCCTGCTCGCCGTCCACCCGGACACCTTCGCGCTGCTCGCCTACAGCGAGAAC GCGCCCGAGATGCTCGACCTCACGCCACACGCCGTCCCCACCATCGACCAGCGGGATGCG CTCGGCATCGGCGTCGATGTGCGCACGCTCTTCCGCTCGCAGAGCTCCGTCGCGCTTCAC AAGGCCGCCGCCTTCGGGGAGGTCAACCTACTCAACCCCATCCTCGTGCACGCCAGGACG TCGGGGAAGCCCTTCTACGCCATATTGCACCGGATCGACGTCGGCCTTGTCATCGACCTT GAGCCGGTCAATCCAGCCGACGTGCCAGTCACCGCCGCGGGCGCGCTCAAGTCGTACAAG CTCGCTGCCAAGGCCATCTCCAGGCTGCAGTCGCTGCCCAGCGGGAACCTGTCGTTGCTG TGCGATGTGCTTGTCCGTGAGGTGAGCGAACTCACGGGCTATGACCGGGTCATGGCCTAC AAGTTCTATGAGGATGAGCATGGCGAGGTCATTTCCGAATGCAGGAGGTCCGATCTGGAG CCGTATCTTGGACTGCACTACCCAGCCACCGACATCCCGCAGGCGTCCAGGTTCCTGTTT ATGAAGAACAAAGTGCGGATGATATGTGATTGCTGTGCCACTCCAGTGAAGGTCATTCAG GATGATAGCCTAGCACAACCTCTCAGCCTCTGTGGTTCCACACTCAGGGCTTCCCATGGT TGCCATGCACAGTACATGGCAAACATGGGTTCTGTTGCATCACTTGCGATGTCAGTCACT ATAAACGAGGATGAGGAGGAAGATGGGGATACCGGGAGTGACCAACAACCGAAAGGCAGG AAGCTGTGGGGGCTTGTCGTCTGCCATCATACAAGCCCGAGGTTCGTCCCTTTCCCACTA AGGTATGCTTGTGAGTTTCTCTTGCAAGTATTTGGCATACAGCTCAACAAGGAGGTGGAA TTGGCTGCTCAGGCAAAGGAGAGGCACATCCTCAGAACGCAAACCCTTCTTTGTGATATG CTCCTGCGGGATGCTCCTGTTGGGATATTTACTCGGTCACCTAATGTGATGGATCTAGTA AAGTGCGATGGAGCTGCATTGTATTACCAGAACCAGCTTTTGGTGCTTGGATCAACACCC TCTGAGTCAGAGATAAAGAGCATTGCAACATGGCTGCAGGATAATCATGATGGTTCAACT GGGCTGAGTACTGACAGCTTAGTGGAAGCGGGTTATCCTGGTGCTGTTGCACTTCGTGAA GTTGTGTGTGGCATGGCGGCCATAAAGATCTCTTCCAAAGATTTTATCTTCTGGTTCCGA TCGCACACAACAAAGGAGATCAAGTGGGGTGGGGCTAAGCATGAACCGGTTGATGCAGAT GACGATGGCAGGAGGATGCATCCACGATCTTCATTCAAGGCCTTCTTGGAGGTGGTTAAA TGGAGAAGTGTTCCCTGGGAAGATGTTGAAATGGATGCTATCCATTCTTTGCAGTTAATA TTACGTGGCTCCCTGCCAGATGAAGATGCCAACAGAAACAATGTAAGGTCCATTGTAAAA GCTCCATCTGATGATATGAAGAAGATACAGGGGCTACTTGAACTGAGAACAGTTACAAAT GAGATGGTCCGCTTAATTGAGACAGCAACTGCCCCTGTCTTGGCTGTCGACATTGCCGGT AACATAAATGGATGGAACAATAAAGCTGCAGAACTAACAGGTTTACCTGTAATGGAAGCC ATAGGGAGGCCCCTGATAGATCTTGTTGTTACTGATTCTATAGAAGTGGTTAAGCAGATT TTGGACTCAGCTTTACAAGGAATTGAAGAGCAAAATATGGAAATCAAGCTTAAAACATTC CATGAACATGAATGCAATGGTCCAGTAATCTTGAAGGTTAACTCCTGCTGTAGTCGGGAC CTTTCAGAGAAAGTCATTGGAGTTTGCTTTGTAGCACAAGATTTGACCAGGCAGAAGATG ATTATGGATAAGTATACTAGGATACAAGGAGACTATGTTGCCATAGTAAAGAACCCCACT GAGCTCATCCCTCCCATATTTATGATCAATGATCTTGGTTCCTGCTTAGAGTGGAATAAA GCTATGCAGAAGATTACCGGTATAAAGAGGGAAGATGCGATAAACAAATTGTTAATTGGG GAGGTCTTCACGCTTCATGATTATGGCTGTAGGGTGAAAGATCATGCAACTCTAACGAAA CTTAGCATACTGATGAATGCAGTGATTTCTGGTCAGGATCCTGAGAAGCTCTTTTTTGGT TTCTTCGACACAGATGGGAAGTATATTGAATCCTTGCTGACAGTGAACAAGAGGACAGAT GCTGAGGGTAAGATCACTGGTGCTCTTTGCTTTCTGCATGTGGCCAGTCCAGAGCTTCAG CATGCTCTCCAGGTGCAGAAAATGTCGGAACAAGCTGCGACAAACAGCTTTAAGGAATTA ACTTACATTCGTCAAGAATTAAGGAACCCACTCAATGGTATCTATATGGAGATGAACACA GTAGAGTTCAACCTTGAGCAAGCTCTGAATACGGTTCTGATGCAAGGCATTCCTTTGGGC AAGGAAAAACAGATTTCAATTGAACGTAATTGGCCTGTGGAAGTATCATGCATGTACCTT TATGGGGACAATTTAAGGCTTCAGCAGATCCTAGCAGACTATCTAGCATGCGCCCTTCAA TTCACACAAACTGCTGAAGGACCTATCGTGCTCCAGGTCATGTCTAAGAAGGAAAACATT GGATCTGGCATGCAGATTGCTCATTTGGAGTTCAGGATTGTCCATCCAGCTCCAGGCGTT CCAGAGGCCCTGATACAGGAGATGTTCCAGCACAACCCAGGGGTGTCCAGGGAGGGCCTC GGCCTGTACATAAGCCAGAAGCTGGTGAAAACGATGAGCGGCACGGTACAGTACCTTCGA GAAGCCGACACCTCGTCGTTCATCATCCTGATGGAGTTCCCGGTCGCCCAGCTCAGCAGC AAGCGGTCCAAGCCTTCGACGAGTAAATTCTGA

Peptide Sequence

PEP ID	Zm00001d034038_P009
PEP Infomation	pep chromosome:B73_RefGen_v4:1:281979188:281983956:-1 gene:Zm00001d034038 transcript:Zm00001d034038_T009 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeC1 description:Phytochrome
Sequence	MSLPSNNRRTCSRSSSARSKHSARVVAQTPVDAQLHAEFEGSQRHFDYSSSVGAANRPSA STSTVSTYLQNMQRGRYIQPFGCLLAVHPDTFALLAYSENAPEMLDLTPHAVPTIDQRDA LGIGVDVRTLFRSQSSVALHKAAAFGEVNLLNPILVHARTSGKPFYAILHRIDVGLVIDL EPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAY KFYEDEHGEVISECRRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCCATPVKVIQ DDSLAQPLSLCGSTLRASHGCHAQYMANMGSVASLAMSVTINEDEEEDGDTGSDQQPKGR KLWGLVVCHHTSPRFVPFPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLCDM LLRDAPVGIFTRSPNVMDLVKCDGAALYYQNQLLVLGSTPSESEIKSIATWLQDNHDGST GLSTDSLVEAGYPGAVALREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDAD DDGRRMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLPDEDANRNNVRSIVK APSDDMKKIQGLLELRTVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEA IGRPLIDLVVTDSIEVVKQILDSALQGIEEQNMEIKLKTFHEHECNGPVILKVNSCCSRD LSEKVIGVCFVAQDLTRQKMIMDKYTRIQGDYVAIVKNPTELIPPIFMINDLGSCLEWNK AMQKITGIKREDAINKLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLFFG FFDTDGKYIESLLTVNKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAATNSFKEL TYIRQELRNPLNGIYMEMNTVEFNLEQALNTVLMQGIPLGKEKQISIERNWPVEVSCMYL YGDNLRLQQILADYLACALQFTQTAEGPIVLQVMSKKENIGSGMQIAHLEFRIVHPAPGV PEALIQEMFQHNPGVSREGLGLYISQKLVKTMSGTVQYLREADTSSFIILMEFPVAQLSS KRSKPSTSKF

Transcript Sequence

Transcript ID	Zm00001d034038_T009
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:281979188:281983956:-1 gene:Zm00001d034038 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeC1 description:Phytochrome
Sequence	GTGCGCCACGCCTCGGACTCGGAGGTGTATTCCCTCTTCTCCCCCCGTGCTTATCCGCGA CGGAATCCAATCCCTTCGCTCAAGTCCTTCTCCTAAGCAAAGCCCCCTCGCTTTTGGCGT ATGCCCCCGCTGGCGCGCCCATGATTCCCGCCGATTCCTCCGCCCGTTCAGTCCAGCAAC CCTTGCTGCTGCAGTGCTGCGGCTAGTTCGGTGGCGGGGAAGGAGGAGGAGGCGAGATCT TGGAGTGGGGCGAAGCGGAGATGTCGTTGCCGTCGAACAACCGGAGGACGTGCTCCCGGA GCAGCTCTGCGCGGTCCAAGCACAGCGCGCGGGTGGTGGCACAGACGCCCGTGGACGCGC AGCTGCACGCCGAGTTCGAGGGCTCCCAGCGCCACTTCGACTACTCCTCGTCGGTGGGCG CCGCCAACCGCCCGTCGGCAAGCACCAGCACCGTCTCCACCTACCTCCAGAACATGCAGC GGGGCCGCTACATCCAGCCCTTCGGCTGCCTGCTCGCCGTCCACCCGGACACCTTCGCGC TGCTCGCCTACAGCGAGAACGCGCCCGAGATGCTCGACCTCACGCCACACGCCGTCCCCA CCATCGACCAGCGGGATGCGCTCGGCATCGGCGTCGATGTGCGCACGCTCTTCCGCTCGC AGAGCTCCGTCGCGCTTCACAAGGCCGCCGCCTTCGGGGAGGTCAACCTACTCAACCCCA TCCTCGTGCACGCCAGGACGTCGGGGAAGCCCTTCTACGCCATATTGCACCGGATCGACG TCGGCCTTGTCATCGACCTTGAGCCGGTCAATCCAGCCGACGTGCCAGTCACCGCCGCGG GCGCGCTCAAGTCGTACAAGCTCGCTGCCAAGGCCATCTCCAGGCTGCAGTCGCTGCCCA GCGGGAACCTGTCGTTGCTGTGCGATGTGCTTGTCCGTGAGGTGAGCGAACTCACGGGCT ATGACCGGGTCATGGCCTACAAGTTCTATGAGGATGAGCATGGCGAGGTCATTTCCGAAT GCAGGAGGTCCGATCTGGAGCCGTATCTTGGACTGCACTACCCAGCCACCGACATCCCGC AGGCGTCCAGGTTCCTGTTTATGAAGAACAAAGTGCGGATGATATGTGATTGCTGTGCCA CTCCAGTGAAGGTCATTCAGGATGATAGCCTAGCACAACCTCTCAGCCTCTGTGGTTCCA CACTCAGGGCTTCCCATGGTTGCCATGCACAGTACATGGCAAACATGGGTTCTGTTGCAT CACTTGCGATGTCAGTCACTATAAACGAGGATGAGGAGGAAGATGGGGATACCGGGAGTG ACCAACAACCGAAAGGCAGGAAGCTGTGGGGGCTTGTCGTCTGCCATCATACAAGCCCGA GGTTCGTCCCTTTCCCACTAAGGTATGCTTGTGAGTTTCTCTTGCAAGTATTTGGCATAC AGCTCAACAAGGAGGTGGAATTGGCTGCTCAGGCAAAGGAGAGGCACATCCTCAGAACGC AAACCCTTCTTTGTGATATGCTCCTGCGGGATGCTCCTGTTGGGATATTTACTCGGTCAC CTAATGTGATGGATCTAGTAAAGTGCGATGGAGCTGCATTGTATTACCAGAACCAGCTTT TGGTGCTTGGATCAACACCCTCTGAGTCAGAGATAAAGAGCATTGCAACATGGCTGCAGG ATAATCATGATGGTTCAACTGGGCTGAGTACTGACAGCTTAGTGGAAGCGGGTTATCCTG GTGCTGTTGCACTTCGTGAAGTTGTGTGTGGCATGGCGGCCATAAAGATCTCTTCCAAAG ATTTTATCTTCTGGTTCCGATCGCACACAACAAAGGAGATCAAGTGGGGTGGGGCTAAGC ATGAACCGGTTGATGCAGATGACGATGGCAGGAGGATGCATCCACGATCTTCATTCAAGG CCTTCTTGGAGGTGGTTAAATGGAGAAGTGTTCCCTGGGAAGATGTTGAAATGGATGCTA TCCATTCTTTGCAGTTAATATTACGTGGCTCCCTGCCAGATGAAGATGCCAACAGAAACA ATGTAAGGTCCATTGTAAAAGCTCCATCTGATGATATGAAGAAGATACAGGGGCTACTTG AACTGAGAACAGTTACAAATGAGATGGTCCGCTTAATTGAGACAGCAACTGCCCCTGTCT TGGCTGTCGACATTGCCGGTAACATAAATGGATGGAACAATAAAGCTGCAGAACTAACAG GTTTACCTGTAATGGAAGCCATAGGGAGGCCCCTGATAGATCTTGTTGTTACTGATTCTA TAGAAGTGGTTAAGCAGATTTTGGACTCAGCTTTACAAGGAATTGAAGAGCAAAATATGG AAATCAAGCTTAAAACATTCCATGAACATGAATGCAATGGTCCAGTAATCTTGAAGGTTA ACTCCTGCTGTAGTCGGGACCTTTCAGAGAAAGTCATTGGAGTTTGCTTTGTAGCACAAG ATTTGACCAGGCAGAAGATGATTATGGATAAGTATACTAGGATACAAGGAGACTATGTTG CCATAGTAAAGAACCCCACTGAGCTCATCCCTCCCATATTTATGATCAATGATCTTGGTT CCTGCTTAGAGTGGAATAAAGCTATGCAGAAGATTACCGGTATAAAGAGGGAAGATGCGA TAAACAAATTGTTAATTGGGGAGGTCTTCACGCTTCATGATTATGGCTGTAGGGTGAAAG ATCATGCAACTCTAACGAAACTTAGCATACTGATGAATGCAGTGATTTCTGGTCAGGATC CTGAGAAGCTCTTTTTTGGTTTCTTCGACACAGATGGGAAGTATATTGAATCCTTGCTGA CAGTGAACAAGAGGACAGATGCTGAGGGTAAGATCACTGGTGCTCTTTGCTTTCTGCATG TGGCCAGTCCAGAGCTTCAGCATGCTCTCCAGGTGCAGAAAATGTCGGAACAAGCTGCGA CAAACAGCTTTAAGGAATTAACTTACATTCGTCAAGAATTAAGGAACCCACTCAATGGTA TCTATATGGAGATGAACACAGTAGAGTTCAACCTTGAGCAAGCTCTGAATACGGTTCTGA TGCAAGGCATTCCTTTGGGCAAGGAAAAACAGATTTCAATTGAACGTAATTGGCCTGTGG AAGTATCATGCATGTACCTTTATGGGGACAATTTAAGGCTTCAGCAGATCCTAGCAGACT ATCTAGCATGCGCCCTTCAATTCACACAAACTGCTGAAGGACCTATCGTGCTCCAGGTCA TGTCTAAGAAGGAAAACATTGGATCTGGCATGCAGATTGCTCATTTGGAGTTCAGGATTG TCCATCCAGCTCCAGGCGTTCCAGAGGCCCTGATACAGGAGATGTTCCAGCACAACCCAG GGGTGTCCAGGGAGGGCCTCGGCCTGTACATAAGCCAGAAGCTGGTGAAAACGATGAGCG GCACGGTACAGTACCTTCGAGAAGCCGACACCTCGTCGTTCATCATCCTGATGGAGTTCC CGGTCGCCCAGCTCAGCAGCAAGCGGTCCAAGCCTTCGACGAGTAAATTCTGACCCTCAT GCTGCTGGAACTGCAGCGAGTGTTCTGCCGTGTCGAAGTCTCGGTTGTAGCTAGCCAAGT GGCTGCTACTGAAACATCGGTTGGTCGGTTCTGGTATCTAGCACGGCCTGTGTAGTGCGG ATAGATTTGGTTGTTTGGCTTTGGAGAGATAAGCTAGCTGGCTAGGTGTAACGTAACGTC GACCGATAACTGTATGTGAATGATGATGAGCTGTGAGGACGAATAAAGGCTTCACTTGTG T