Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d033975_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:1:279918851:279922329:1 gene:Zm00001d033975 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sec23/Sec24 protein transport family protein
Sequence

ATGGACTTCGCGGAGCTGGAGGCCGTGGAGGGCCTCCGGTGGCCATGGCACTCGTGGCCG
CCGACTACCCCCGCCGCCGCGTCCCTCGTCGTGCCCACCTCCGTCCTCTGCTCGCCGCTG
CAGCACCCCACGGCGCCGGACCTCCTCCCGCTGCTACCCTACGCGCCGCTCCGCTGCGCC
TCCCCGGGTTGTGGCGCCGCGCTCAACCCGTTCTCGCGCGTGCACCACGGCTCCGCGCGC
TGGTCCTGCGCCTTCTGTGGCGCCGCCGCCAACCCGTTCCCCCGCCTACTGGCCCCCGAC
GCGCTCCCCGCCGAACTCTTCCCCACCCACTCCAGCGTCGAGTACTTGCTGCCCCCGGAC
CCCGCTGAGCCCGGGGGACCGGGGCCACCTGCGCTCGTGTTCGTGATCGATGCGGCCACG
GCGGCCGAGGAGCTCACCGTGCTCAAGGACGAGGTGCGCAGGCTCATGCAGGGGCTGCCT
GAGGGGATCAGGGTGGCGCTCGTCACTTTCGCTGCGTCTGTGTGGGTGCACGATCTTGGA
TTTGAGGGTTGCGCTCGGGTGGTTGTGCTTAATGGCGAGCGTGAGCTCGAGTCTGACAAG
ATACAGAAACTTTTAGGTATTCACCGTTCACAGTACAAGAACTTGGCTATGCCAAGGTCC
ACTGAAGTGCAGCGGTTTTTGCTGCCTGTTTCTGAATGTGAATTTAACATCACATCTGCA
ATAGAGGACCTGAGCTCCATGCCTGCGTGTCCACGTGGGCATCGCCCTTTAAGAGCAACT
GGCGCAGCGATTTCTACTGCTATTGCTCTTCTAGAGGGTTGCTGCTCACCCAGTACCGGT
GGTCGGATTATGATCTTTACATCTGGTCCTGCAACAGTTGGTCCAGGGTGTGTGGTGGAA
ACTGATCTTGGGAAAACAATTCGTTCTCATCGTGACATATTCAATAGCAACGCACCGCTG
ACTGACAAAGCACGTGATTTCTATAAGAAAGTTGCAAAGAGGTTGACAGACCATGCATTA
GTTCTTGATCTATTCGCCTGCTCTCTTGATCAGGTTGGGGCTGCAGAGCTGAGGAATCCA
ATTGAAGTGACAGGGGGTTTAATGGTGCATACAGAGTCATTTGAGTATGAGCAGTTCAAA
AGCTGTTTTAGGCATATGTTCCGTCGTGAAGGCACCAATTACCTTAATATGAACTTTAAT
GCGACGATTGAAATAGTGACATCAAAGGAGGTGAAGATTTGTGGTGCCCTTGGTCCCTGC
ATTTCCCTCCGCAGGAAAAATAACTCAGTTAGTGATAAGGAAATTGGTGAAGGTGGGTCA
AATTATTGGAAAACTAGTTCACTGAGCAGCAAAACCAGCATTGCTTTCCTTTTCCGAGTT
GATTGCAATCATAAAGCTGATCCGCCGACTGTCTTCTTTATTCAGTTTATGACAAGGTAC
CGACATGGTGATGGTAGTTATCGCCTGAGGGTGACGACTGTTGCAAGAAGGTGGGCTGCT
CCTCGATCTCCTGAAATTGCTGCAGGGTTTGATCAGGAAGCTGCTGCAGCTGTAATGGCC
AGGCTTGCTGTTTACAGGGCAGAGACATACCATGTTAGAGATGTTATACGGTGGCTTGAC
AAGATGCTTATTCGCTTTACTGCTAAGTTCGGAAACTATGTTCCTGAAGATCCATCTACA
TTTCGGCTGTCAACAAACTTCTCCTTGTATCCGCAGTTCATGTACTACTTGCGGAGATCA
CAGTTCATTGATGTTTTCAACAGCTCTCCTGATGAAACTGCTTTCTTCAGGTTGATGCTG
AATAGGGAAGGGGTTGTGGGGTCTCTAATCATGATCCAGCCTACTCTATTCCAGTACTCA
TTTGATGGGCCACCTATTCCTGTACTGTTAGATGTCAGCTCCATCTCTCCTGATGTCATT
TTACTATTTGATTCATACTTCTATATTGTGATTCATTATGGCTCAAAGATTGCTCAATGG
AGGAAGCTTGGCTATCATAAGGACCCAAACCATGAAAATTTACGGAAGCTCCTTGAAGCA
CCAGAAGTAGATGCAGAGGCACTATTGGTAGACCGTTTCCCTGTGCCAAAACTCATAAAG
TGTGATCATCATGGTAGTCAGGCCAGGTTCCTGCTCGCTCGATTGAATCCATCTGTGACA
CAGAAAACACAGTTTTCAAAGGGATCTGAAGTCATTTTCACCGACGATGTTAGTCTGCAA
GTGTTTATTGAACACTTGCAGGAGTTGGCTGTTCAGGGCTAG

Peptide Sequence

PEP ID

Zm00001d033975_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:1:279918851:279922329:1 gene:Zm00001d033975 transcript:Zm00001d033975_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sec23/Sec24 protein transport family protein
Sequence

MDFAELEAVEGLRWPWHSWPPTTPAAASLVVPTSVLCSPLQHPTAPDLLPLLPYAPLRCA
SPGCGAALNPFSRVHHGSARWSCAFCGAAANPFPRLLAPDALPAELFPTHSSVEYLLPPD
PAEPGGPGPPALVFVIDAATAAEELTVLKDEVRRLMQGLPEGIRVALVTFAASVWVHDLG
FEGCARVVVLNGERELESDKIQKLLGIHRSQYKNLAMPRSTEVQRFLLPVSECEFNITSA
IEDLSSMPACPRGHRPLRATGAAISTAIALLEGCCSPSTGGRIMIFTSGPATVGPGCVVE
TDLGKTIRSHRDIFNSNAPLTDKARDFYKKVAKRLTDHALVLDLFACSLDQVGAAELRNP
IEVTGGLMVHTESFEYEQFKSCFRHMFRREGTNYLNMNFNATIEIVTSKEVKICGALGPC
ISLRRKNNSVSDKEIGEGGSNYWKTSSLSSKTSIAFLFRVDCNHKADPPTVFFIQFMTRY
RHGDGSYRLRVTTVARRWAAPRSPEIAAGFDQEAAAAVMARLAVYRAETYHVRDVIRWLD
KMLIRFTAKFGNYVPEDPSTFRLSTNFSLYPQFMYYLRRSQFIDVFNSSPDETAFFRLML
NREGVVGSLIMIQPTLFQYSFDGPPIPVLLDVSSISPDVILLFDSYFYIVIHYGSKIAQW
RKLGYHKDPNHENLRKLLEAPEVDAEALLVDRFPVPKLIKCDHHGSQARFLLARLNPSVT
QKTQFSKGSEVIFTDDVSLQVFIEHLQELAVQG

Transcript Sequence

Transcript ID

Zm00001d033975_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:279918851:279922329:1 gene:Zm00001d033975 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sec23/Sec24 protein transport family protein
Sequence

AAGAGCTGCACACTGGTCACTGGAAAACGAAGGCAAACCCTAATCGCTACTCCACCGCAG
CGCCCACTACACCGATCGGGCTCCGATGGACTTCGCGGAGCTGGAGGCCGTGGAGGGCCT
CCGGTGGCCATGGCACTCGTGGCCGCCGACTACCCCCGCCGCCGCGTCCCTCGTCGTGCC
CACCTCCGTCCTCTGCTCGCCGCTGCAGCACCCCACGGCGCCGGACCTCCTCCCGCTGCT
ACCCTACGCGCCGCTCCGCTGCGCCTCCCCGGGTTGTGGCGCCGCGCTCAACCCGTTCTC
GCGCGTGCACCACGGCTCCGCGCGCTGGTCCTGCGCCTTCTGTGGCGCCGCCGCCAACCC
GTTCCCCCGCCTACTGGCCCCCGACGCGCTCCCCGCCGAACTCTTCCCCACCCACTCCAG
CGTCGAGTACTTGCTGCCCCCGGACCCCGCTGAGCCCGGGGGACCGGGGCCACCTGCGCT
CGTGTTCGTGATCGATGCGGCCACGGCGGCCGAGGAGCTCACCGTGCTCAAGGACGAGGT
GCGCAGGCTCATGCAGGGGCTGCCTGAGGGGATCAGGGTGGCGCTCGTCACTTTCGCTGC
GTCTGTGTGGGTGCACGATCTTGGATTTGAGGGTTGCGCTCGGGTGGTTGTGCTTAATGG
CGAGCGTGAGCTCGAGTCTGACAAGATACAGAAACTTTTAGGTATTCACCGTTCACAGTA
CAAGAACTTGGCTATGCCAAGGTCCACTGAAGTGCAGCGGTTTTTGCTGCCTGTTTCTGA
ATGTGAATTTAACATCACATCTGCAATAGAGGACCTGAGCTCCATGCCTGCGTGTCCACG
TGGGCATCGCCCTTTAAGAGCAACTGGCGCAGCGATTTCTACTGCTATTGCTCTTCTAGA
GGGTTGCTGCTCACCCAGTACCGGTGGTCGGATTATGATCTTTACATCTGGTCCTGCAAC
AGTTGGTCCAGGGTGTGTGGTGGAAACTGATCTTGGGAAAACAATTCGTTCTCATCGTGA
CATATTCAATAGCAACGCACCGCTGACTGACAAAGCACGTGATTTCTATAAGAAAGTTGC
AAAGAGGTTGACAGACCATGCATTAGTTCTTGATCTATTCGCCTGCTCTCTTGATCAGGT
TGGGGCTGCAGAGCTGAGGAATCCAATTGAAGTGACAGGGGGTTTAATGGTGCATACAGA
GTCATTTGAGTATGAGCAGTTCAAAAGCTGTTTTAGGCATATGTTCCGTCGTGAAGGCAC
CAATTACCTTAATATGAACTTTAATGCGACGATTGAAATAGTGACATCAAAGGAGGTGAA
GATTTGTGGTGCCCTTGGTCCCTGCATTTCCCTCCGCAGGAAAAATAACTCAGTTAGTGA
TAAGGAAATTGGTGAAGGTGGGTCAAATTATTGGAAAACTAGTTCACTGAGCAGCAAAAC
CAGCATTGCTTTCCTTTTCCGAGTTGATTGCAATCATAAAGCTGATCCGCCGACTGTCTT
CTTTATTCAGTTTATGACAAGGTACCGACATGGTGATGGTAGTTATCGCCTGAGGGTGAC
GACTGTTGCAAGAAGGTGGGCTGCTCCTCGATCTCCTGAAATTGCTGCAGGGTTTGATCA
GGAAGCTGCTGCAGCTGTAATGGCCAGGCTTGCTGTTTACAGGGCAGAGACATACCATGT
TAGAGATGTTATACGGTGGCTTGACAAGATGCTTATTCGCTTTACTGCTAAGTTCGGAAA
CTATGTTCCTGAAGATCCATCTACATTTCGGCTGTCAACAAACTTCTCCTTGTATCCGCA
GTTCATGTACTACTTGCGGAGATCACAGTTCATTGATGTTTTCAACAGCTCTCCTGATGA
AACTGCTTTCTTCAGGTTGATGCTGAATAGGGAAGGGGTTGTGGGGTCTCTAATCATGAT
CCAGCCTACTCTATTCCAGTACTCATTTGATGGGCCACCTATTCCTGTACTGTTAGATGT
CAGCTCCATCTCTCCTGATGTCATTTTACTATTTGATTCATACTTCTATATTGTGATTCA
TTATGGCTCAAAGATTGCTCAATGGAGGAAGCTTGGCTATCATAAGGACCCAAACCATGA
AAATTTACGGAAGCTCCTTGAAGCACCAGAAGTAGATGCAGAGGCACTATTGGTAGACCG
TTTCCCTGTGCCAAAACTCATAAAGTGTGATCATCATGGTAGTCAGGCCAGGTTCCTGCT
CGCTCGATTGAATCCATCTGTGACACAGAAAACACAGTTTTCAAAGGGATCTGAAGTCAT
TTTCACCGACGATGTTAGTCTGCAAGTGTTTATTGAACACTTGCAGGAGTTGGCTGTTCA
GGGCTAGAAAGTCATGAAGCTTGACCTTGTCTGCTATTCCACTTTGGTCCATTAGATACT
GAAGATATGGCTTTGAGAGGGACCAGACTTCATATTCACAGATGAAGCTTGCAAGTTTTT
TATTGAACACTTGCAGTAATTGGTGTGCAGGATTAACTAGTTCATGTGGAATTATTTAAA
TGCAATTTTCTGCTCACTTGCAAATACTGGGGAGCTCTACTGCCTGGAGTGAGATCTCCC
TGAGTTGTACATTGCTCAAGCTCCAGTTTGATGTAAGACAATTACATTTT