Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d033799_T035
CDS Infomation	cds chromosome:B73_RefGen_v4:1:274079253:274083247:-1 gene:Zm00001d033799 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeA1 description: phytochromeA1
Sequence	ATGTCTTCCTTGAGGCCTGCCCAGTCTTCTAGTTCATCCAGCAGGACTCGGCAGAGCTCC CAGGCACGGATACTAGCACAAACAACCCTTGATGCTGAACTCAATGCAGAGTATGAAGAA TCTGGTGATTCCTTTGATTACTCCAAGTTGGTTGAAGCACAACGGAGCACTCCACCTGAG CAGCAAGGGCGATCGGGAAAGGTCATAGCCTACTTGCAGCATATTCAAAGAGGAAAGCTA ATCCAACCATTCGGTTGCTTGTTGGCCCTTGACGAGAAGAGCTTCAGGGTCATTGCATTC AGTGAGAATGCACCTGAAATGCTTACAACGGTCAGCCATGCTGTGCCGAACGTTGATGAT CCCCCAAAGCTAGGAATTGGTACCAATGTGCGCTCCCTTTTCACTGACCCTGGTGCTACA GCACTGCAGAAGGCACTAGGATTTGCTGATGTTTCTTTGCTGAATCCTATCCTAGTTCAA TGCAAGACCTCAGGCAAGCCATTCTATGCCATTGTTCATAGGGCAACTGGTTGTCTGGTG GTAGATTTTGAGCCTGTGAAGCCTACAGAATTTCCTGCCACTGCTGCTGGGGCTTTGCAG TCTTACAAGCTTGCTGCCAAGGCAATCTCTAAGATTCAATCGCTACCAGGTGGAAGCATG CAGGCCTTATGCAATACCGTGGTTAAGGAAGTCTTCGACCTTACAGGTTATGACAGGGTT ATGGCTTACAAGTTCCATGAAGATGAGCATGGGGAGGTCTTTGCTGAGATCACCAAACCT GGTATTGAGCCCTATCTAGGCCTGCACTATCCGGCCACTGATATCCCTCAAGCTGCCAGG TTTCTCTTCATGAAGAACAAAGTCAGGATGATCTGTGATTGCCGTGCAAGATCGGTGAAG ATTATTGAAGATGAGGCGCTCTCCATTGATATTAGCTTGTGTGGTTCAACTCTTAGAGCA CCACATAGCTGTCACCTTCAGTATATGGAAAACATGAACTCGATCGCATCCCTTGTCATG GCTGTTGTGGTTAATGAAAATGAAGACGATGACGAACCCGAGTCTGAACAACCACCACAA CAGCAGAAGAGGAAGAAACTGTGGGGTCTCATTGTTTGCCACCACGAGAGCCCCAGATAT GTGCCGTTTCCACTGCGGTATGCCTGTGAATTCTTGGCCCAGGTGTTTGCTGTCCATGTA AATAAGGAGTTTGAATTGGAGAAGCAGATACGAGAGAAAAGCATTCTGCGAATGCAGACA ATGCTCTCTGACATGCTATTCAAGGAATCATCTCCCTTGAGTATCGTATCCGGGAGTCCA AATATCATGGACCTCGTTAAGTGTGATGGTGCTGCTCTTTTGTATGGGGACAAAGTATGG CGGCTTCAAACGGCTCCAACTGAGTCTCAGATACGTGATATTGCCTTCTGGCTTTCAGAA GTTCATGGGGATTCCACTGGCTTGAGCACTGATAGCCTCCAGGATGCTGGATATCCAGGA GCCGCTTCCCTTGGTGACATGATCTGTGGAATGGCAGTGGCTAAGATCACGTCCAAGGAC ATTCTTTTCTGGTTCAGGTCACATACAGCTGCTGAAATCAAGTGGGGAGGTGCAAAGCAT GATCCATCTGATGAGGATGACAGCAGAAGGATGCACCCTAGGCTGTCCTTTAAGGCTTTC CTCGAGGTTGTCAAGATGAAGAGTTTGCCATGGAGTGACTACGAGATGGATGCTATTCAC TCGTTGCAACTTATTCTTAGAGGTACACTGAACGATGCCTTGAAGCCGGCCCAGTCATCT GGTTTAGATAACCAGATTGGTGATCTCAAACTTGATGGGCTCGCCGAACTGCAAGCGGTG ACAAGTGAAATGGTTCGCCTGATGGAAACGGCAACTGTTCCGATCTTGGCGGTAGATGGC AACGGATTGGTCAACGGATGGAACCAAAAGGTGGCGGACTTGTCGGGGTTGCGAGTTGAT GAAGCTATAGGAAGACACATACTTACACTTGTGGAGGATTCTTCTGTACCAATTGTTCAG AGGATGCTATACTTAGCTCTGCAGGGCAGAGAAGAGAAGGAGGTTCGATTTGAGTTGAAA ACCCATGGCTCCAAGAGGGACGATGGCCCTGTTATCTTGGTTGTAAATGCTTGTGCCAGC CGTGACATGCATGACCATGTTGTTGGGGTGTGCTTTGTAGCCCAGGATATGACTGTTCAT AAGTTGGTCATGGACAAATTTACCCGGGTTGAGGGGGACTACAGGGCCATCATTCACAAC CCGAACCCGCTCATTCCTCCGATATTTGGCGCCGACCAGTTCGGATGGTGCTCTGAGTGG AACGCAGCCATGACCAAGCTTACTGGGTGGCACAGAGATGAGGTGATCGACAGGATGCTC CTTGGCGAGGTTTTCGACAGCAGCAATGCTTCCTGCCTTCTGAAGAGCAAAGACGCTTTC GTACGTCTTTGCATTATCATCAACAGCGCATTAGCTGGTGAAGAGGCAGAGAAGGCTCCA ATCGGTTTCTTTGACCGCGATGGCAAATATATTGAGTGCCTTCTGTCAGTGAACAGAAAA GTGAATGCAGATGGCGTCGTCACCGGAGTGTTCTGTTTCATTCATGTTCCTAGTGATGAC CTCCAGCATGCGCTACATGTGCAGCAAGCCTCTGAGCAGACAGCACTGAGAAGGCTGAAG GCTTTCTCGTACATGCGACATGCCATCGACAAACCTCTCTCAGGTATGCTCTATTCTAGG GAAACACTCAAGGGCACAGACCTGGATGAAGAGCAGATGAGGCAGGTTCGTGTCGCGGAT AATTGCCATCGCCAGCTAAACAAGATACTCGCCGACTTAGATCAAGATAACATTACTGAC AAGTCGAGTTGCTTGGATTTGGACATGGCTGAGTTTGTGCTGCAAGACGTGGTGGTGTCT GCTGTAAGTCAAGTACTGATAGGTTGCCAGGGTAAAGGCATCAGAGTTGCTTGCAACCTG CCGGAGAGATCCATGAAGCAAAAGGTTTACGGGGATGGTATACGGCTCCAGCAGATCCTC TCCGACTTCTTATTCGTTTCGGTGAAATTCTCTCCTGCTGGTGGCTCTGTTGATATCTCT TCCAAACTGACCAAGAACAGCATTGGCGAAAACCTTCATCTCATAGACTTCGAACTTAGG ATCAAGCACCAAGGAGCAGGAGTCCCAGCAGAAATACTGTCACAGATGTATGGGGAGGAC AATAGAGAACAGTCGGAGGAGGGCTTGAGCCTCCTTGTTTCTAGAAACCTTCTGAGGCTC ATGAATGGCGACATTCGTCACCTCAGGGAAGCTGGCATGTCAACCTTCATCCTCACTGCT GAACTCGCTGCTGCTCCTTCAGCAGCTGGACATTGA

Peptide Sequence

PEP ID	Zm00001d033799_P035
PEP Infomation	pep chromosome:B73_RefGen_v4:1:274079253:274083247:-1 gene:Zm00001d033799 transcript:Zm00001d033799_T035 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeA1 description: phytochromeA1
Sequence	MSSLRPAQSSSSSSRTRQSSQARILAQTTLDAELNAEYEESGDSFDYSKLVEAQRSTPPE QQGRSGKVIAYLQHIQRGKLIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDD PPKLGIGTNVRSLFTDPGATALQKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLV VDFEPVKPTEFPATAAGALQSYKLAAKAISKIQSLPGGSMQALCNTVVKEVFDLTGYDRV MAYKFHEDEHGEVFAEITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSVK IIEDEALSIDISLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNENEDDDEPESEQPPQ QQKRKKLWGLIVCHHESPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQT MLSDMLFKESSPLSIVSGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSE VHGDSTGLSTDSLQDAGYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKH DPSDEDDSRRMHPRLSFKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKPAQSS GLDNQIGDLKLDGLAELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVADLSGLRVD EAIGRHILTLVEDSSVPIVQRMLYLALQGREEKEVRFELKTHGSKRDDGPVILVVNACAS RDMHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYRAIIHNPNPLIPPIFGADQFGWCSEW NAAMTKLTGWHRDEVIDRMLLGEVFDSSNASCLLKSKDAFVRLCIIINSALAGEEAEKAP IGFFDRDGKYIECLLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTALRRLK AFSYMRHAIDKPLSGMLYSRETLKGTDLDEEQMRQVRVADNCHRQLNKILADLDQDNITD KSSCLDLDMAEFVLQDVVVSAVSQVLIGCQGKGIRVACNLPERSMKQKVYGDGIRLQQIL SDFLFVSVKFSPAGGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYGED NREQSEEGLSLLVSRNLLRLMNGDIRHLREAGMSTFILTAELAAAPSAAGH

Transcript Sequence

Transcript ID	Zm00001d033799_T035
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:274079253:274083247:-1 gene:Zm00001d033799 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeA1 description: phytochromeA1
Sequence	TTACTGATTTATGCTTTCCACTGCCCTTTTACCAGTTAAGCAAGAGTGGTATCTGGTGGT TTTGTTTTTCAAAAGAAGACAGAAATGTCTTCCTTGAGGCCTGCCCAGTCTTCTAGTTCA TCCAGCAGGACTCGGCAGAGCTCCCAGGCACGGATACTAGCACAAACAACCCTTGATGCT GAACTCAATGCAGAGTATGAAGAATCTGGTGATTCCTTTGATTACTCCAAGTTGGTTGAA GCACAACGGAGCACTCCACCTGAGCAGCAAGGGCGATCGGGAAAGGTCATAGCCTACTTG CAGCATATTCAAAGAGGAAAGCTAATCCAACCATTCGGTTGCTTGTTGGCCCTTGACGAG AAGAGCTTCAGGGTCATTGCATTCAGTGAGAATGCACCTGAAATGCTTACAACGGTCAGC CATGCTGTGCCGAACGTTGATGATCCCCCAAAGCTAGGAATTGGTACCAATGTGCGCTCC CTTTTCACTGACCCTGGTGCTACAGCACTGCAGAAGGCACTAGGATTTGCTGATGTTTCT TTGCTGAATCCTATCCTAGTTCAATGCAAGACCTCAGGCAAGCCATTCTATGCCATTGTT CATAGGGCAACTGGTTGTCTGGTGGTAGATTTTGAGCCTGTGAAGCCTACAGAATTTCCT GCCACTGCTGCTGGGGCTTTGCAGTCTTACAAGCTTGCTGCCAAGGCAATCTCTAAGATT CAATCGCTACCAGGTGGAAGCATGCAGGCCTTATGCAATACCGTGGTTAAGGAAGTCTTC GACCTTACAGGTTATGACAGGGTTATGGCTTACAAGTTCCATGAAGATGAGCATGGGGAG GTCTTTGCTGAGATCACCAAACCTGGTATTGAGCCCTATCTAGGCCTGCACTATCCGGCC ACTGATATCCCTCAAGCTGCCAGGTTTCTCTTCATGAAGAACAAAGTCAGGATGATCTGT GATTGCCGTGCAAGATCGGTGAAGATTATTGAAGATGAGGCGCTCTCCATTGATATTAGC TTGTGTGGTTCAACTCTTAGAGCACCACATAGCTGTCACCTTCAGTATATGGAAAACATG AACTCGATCGCATCCCTTGTCATGGCTGTTGTGGTTAATGAAAATGAAGACGATGACGAA CCCGAGTCTGAACAACCACCACAACAGCAGAAGAGGAAGAAACTGTGGGGTCTCATTGTT TGCCACCACGAGAGCCCCAGATATGTGCCGTTTCCACTGCGGTATGCCTGTGAATTCTTG GCCCAGGTGTTTGCTGTCCATGTAAATAAGGAGTTTGAATTGGAGAAGCAGATACGAGAG AAAAGCATTCTGCGAATGCAGACAATGCTCTCTGACATGCTATTCAAGGAATCATCTCCC TTGAGTATCGTATCCGGGAGTCCAAATATCATGGACCTCGTTAAGTGTGATGGTGCTGCT CTTTTGTATGGGGACAAAGTATGGCGGCTTCAAACGGCTCCAACTGAGTCTCAGATACGT GATATTGCCTTCTGGCTTTCAGAAGTTCATGGGGATTCCACTGGCTTGAGCACTGATAGC CTCCAGGATGCTGGATATCCAGGAGCCGCTTCCCTTGGTGACATGATCTGTGGAATGGCA GTGGCTAAGATCACGTCCAAGGACATTCTTTTCTGGTTCAGGTCACATACAGCTGCTGAA ATCAAGTGGGGAGGTGCAAAGCATGATCCATCTGATGAGGATGACAGCAGAAGGATGCAC CCTAGGCTGTCCTTTAAGGCTTTCCTCGAGGTTGTCAAGATGAAGAGTTTGCCATGGAGT GACTACGAGATGGATGCTATTCACTCGTTGCAACTTATTCTTAGAGGTACACTGAACGAT GCCTTGAAGCCGGCCCAGTCATCTGGTTTAGATAACCAGATTGGTGATCTCAAACTTGAT GGGCTCGCCGAACTGCAAGCGGTGACAAGTGAAATGGTTCGCCTGATGGAAACGGCAACT GTTCCGATCTTGGCGGTAGATGGCAACGGATTGGTCAACGGATGGAACCAAAAGGTGGCG GACTTGTCGGGGTTGCGAGTTGATGAAGCTATAGGAAGACACATACTTACACTTGTGGAG GATTCTTCTGTACCAATTGTTCAGAGGATGCTATACTTAGCTCTGCAGGGCAGAGAAGAG AAGGAGGTTCGATTTGAGTTGAAAACCCATGGCTCCAAGAGGGACGATGGCCCTGTTATC TTGGTTGTAAATGCTTGTGCCAGCCGTGACATGCATGACCATGTTGTTGGGGTGTGCTTT GTAGCCCAGGATATGACTGTTCATAAGTTGGTCATGGACAAATTTACCCGGGTTGAGGGG GACTACAGGGCCATCATTCACAACCCGAACCCGCTCATTCCTCCGATATTTGGCGCCGAC CAGTTCGGATGGTGCTCTGAGTGGAACGCAGCCATGACCAAGCTTACTGGGTGGCACAGA GATGAGGTGATCGACAGGATGCTCCTTGGCGAGGTTTTCGACAGCAGCAATGCTTCCTGC CTTCTGAAGAGCAAAGACGCTTTCGTACGTCTTTGCATTATCATCAACAGCGCATTAGCT GGTGAAGAGGCAGAGAAGGCTCCAATCGGTTTCTTTGACCGCGATGGCAAATATATTGAG TGCCTTCTGTCAGTGAACAGAAAAGTGAATGCAGATGGCGTCGTCACCGGAGTGTTCTGT TTCATTCATGTTCCTAGTGATGACCTCCAGCATGCGCTACATGTGCAGCAAGCCTCTGAG CAGACAGCACTGAGAAGGCTGAAGGCTTTCTCGTACATGCGACATGCCATCGACAAACCT CTCTCAGGTATGCTCTATTCTAGGGAAACACTCAAGGGCACAGACCTGGATGAAGAGCAG ATGAGGCAGGTTCGTGTCGCGGATAATTGCCATCGCCAGCTAAACAAGATACTCGCCGAC TTAGATCAAGATAACATTACTGACAAGTCGAGTTGCTTGGATTTGGACATGGCTGAGTTT GTGCTGCAAGACGTGGTGGTGTCTGCTGTAAGTCAAGTACTGATAGGTTGCCAGGGTAAA GGCATCAGAGTTGCTTGCAACCTGCCGGAGAGATCCATGAAGCAAAAGGTTTACGGGGAT GGTATACGGCTCCAGCAGATCCTCTCCGACTTCTTATTCGTTTCGGTGAAATTCTCTCCT GCTGGTGGCTCTGTTGATATCTCTTCCAAACTGACCAAGAACAGCATTGGCGAAAACCTT CATCTCATAGACTTCGAACTTAGGATCAAGCACCAAGGAGCAGGAGTCCCAGCAGAAATA CTGTCACAGATGTATGGGGAGGACAATAGAGAACAGTCGGAGGAGGGCTTGAGCCTCCTT GTTTCTAGAAACCTTCTGAGGCTCATGAATGGCGACATTCGTCACCTCAGGGAAGCTGGC ATGTCAACCTTCATCCTCACTGCTGAACTCGCTGCTGCTCCTTCAGCAGCTGGACATTGA AGCCGTCACTGCAAACAAGTGCCAAATGGTATGTTCGCTAGTTTGTGTTAAGGCAGTCTG CAATTTCCCAAATTTCCTTAGCTTAGAATAAAATAACTCTGCAATTTCCCAAATTTCCTA CTATGGATATATGATGAATAAATA