Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d033746_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:1:272699616:272704266:1 gene:Zm00001d033746 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phosphoglucomutase1 description: phosphoglucomutase1
Sequence

ATGGCTGCTGCCAATGGAGTAAGACGTGTTTGGGTTGGACAAAACAGTCTCATGTCTACT
CCTGCTGTATCTGCTGTCATCCGTGAAAGAATTGGTGCAGATGGATCAAAGGCTACTGGT
GCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGGACTTTGGTATCAAA
TACAATATGGGAAATGGTGGACCTGCCCCTGAATCCGTTACCGACAAGATTTTCTCTAAT
ACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATGTTGATATTTCTGTT
GTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTCTTTGACTCT
AGTGTAAATTACATAAAGTTAATGAAGACAATTTTTGACTTCGAAGCAATAAAAAAGCTA
CTGACCTCCCCAAAGTTTACATTCTGTTATGATGCGCTCCATGGTGTTGCTGGAGCTTAT
GCCAAACACATCTTTGTGGAAGAGCTTGGTGCTGATGAAAGCTCACTGTTGAATTGTGTC
CCAAAAGAGGACTTTGGAGGTGGTCATCCGGATCCTAACCTCACCTATGCAAAAGAGTTG
GTTGAACGGATGGGTCTTGGAAAGTCATCCTCAAATGTTGAACCTCCTGAATTTGGTGCT
GCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGATTCTTTGTGACACCA
TCGGACTCTGTTGCCATTATAGCGGCCAATGCTGTTCAATCAATTCCTTACTTTGCTTCT
GGCCTGAAGGGAGTTGCCAGGAGCATGCCAACATCAGCTGCCCTTGATGTTGTTGCAAAG
AATTTGAATCTCAAGTTCTTTGAGGTGCCTACTGGGTGGAAATTTTTTGGGAATTTGATG
GATGCTGGAATGTGCTCAATCTGTGGTGAAGAAAGCTTTGGCACTGGGTCTGACCACATT
CGTGAGAAAGATGGCATCTGGGCTGTGCTTGCATGGCTTTCTATTATTGCTTTCAAGAAT
AAGGACAACCTTGGAGGAGATAAGCTTGTCACTGTTGAAGATATTGTCCGTCAGCATTGG
GCCACATATGGTCGCCATTATTACACACGCTATGACTATGAGAATGTCGATGCTGGGGCT
GCTAAGGAGCTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAG
TTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTAC
AAGGATCCAGTTGATGGCTCTGTGTCCAAGCACCAGGGCATCCGATACCTCTTCGGAGAT
GGTTCACGACTGGTGTTCCGTCTATCCGGAACCGGTTCTGTTGGTGCCACCATCCGTGTC
TACATCGAGCAATACGAGAAGGATTCCTCCAAGACCGGCAGGGATTCACAGGAGGCCCTT
GCTCCACTGGTTGATGTTGCGCTCAAGCTCTCCAAGATGCAAGAGTACACTGGCCGCTCT
GCCCCCACCGTTATCACATAA

Peptide Sequence

PEP ID

Zm00001d033746_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:1:272699616:272704266:1 gene:Zm00001d033746 transcript:Zm00001d033746_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phosphoglucomutase1 description: phosphoglucomutase1
Sequence

MAAANGVRRVWVGQNSLMSTPAVSAVIRERIGADGSKATGAFILTASHNPGGPTEDFGIK
YNMGNGGPAPESVTDKIFSNTTTISEYLISEDLPDVDISVVGVTSFSGPEGPFDVDVFDS
SVNYIKLMKTIFDFEAIKKLLTSPKFTFCYDALHGVAGAYAKHIFVEELGADESSLLNCV
PKEDFGGGHPDPNLTYAKELVERMGLGKSSSNVEPPEFGAAADGDADRNMILGKRFFVTP
SDSVAIIAANAVQSIPYFASGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLM
DAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSIIAFKNKDNLGGDKLVTVEDIVRQHW
ATYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLIKEIRSDVSEVVAADEFEY
KDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYEKDSSKTGRDSQEAL
APLVDVALKLSKMQEYTGRSAPTVIT

Transcript Sequence

Transcript ID

Zm00001d033746_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:272699616:272704266:1 gene:Zm00001d033746 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phosphoglucomutase1 description: phosphoglucomutase1
Sequence

AGGTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACATTCAATG
CCCTTCCTGCAGACCAAGTAAAAGGTGCAACCATTGTTGTCTCTGGTGATGGCCGCTATT
TCTCAAAAGATGCTGTTCAGATCATAACAAAAATGGCTGCTGCCAATGGAGTAAGACGTG
TTTGGGTTGGACAAAACAGTCTCATGTCTACTCCTGCTGTATCTGCTGTCATCCGTGAAA
GAATTGGTGCAGATGGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACC
CAGGTGGTCCTACGGAGGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCC
CTGAATCCGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCATCT
CTGAAGACCTTCCAGATGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCG
AAGGCCCCTTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAGA
CAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTTTACATTCTGTT
ATGATGCGCTCCATGGTGTTGCTGGAGCTTATGCCAAACACATCTTTGTGGAAGAGCTTG
GTGCTGATGAAAGCTCACTGTTGAATTGTGTCCCAAAAGAGGACTTTGGAGGTGGTCATC
CGGATCCTAACCTCACCTATGCAAAAGAGTTGGTTGAACGGATGGGTCTTGGAAAGTCAT
CCTCAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACA
TGATTCTGGGTAAAAGATTCTTTGTGACACCATCGGACTCTGTTGCCATTATAGCGGCCA
ATGCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGGAGCATGC
CAACATCAGCTGCCCTTGATGTTGTTGCAAAGAATTTGAATCTCAAGTTCTTTGAGGTGC
CTACTGGGTGGAAATTTTTTGGGAATTTGATGGATGCTGGAATGTGCTCAATCTGTGGTG
AAGAAAGCTTTGGCACTGGGTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTGC
TTGCATGGCTTTCTATTATTGCTTTCAAGAATAAGGACAACCTTGGAGGAGATAAGCTTG
TCACTGTTGAAGATATTGTCCGTCAGCATTGGGCCACATATGGTCGCCATTATTACACAC
GCTATGACTATGAGAATGTCGATGCTGGGGCTGCTAAGGAGCTGATGGCAAACCTAGTAA
GCATGCAGTCATCACTTTCTGATGTTAACAAGTTGATCAAGGAGATCCGGTCTGATGTTT
CTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCAGTTGATGGCTCTGTGTCCA
AGCACCAGGGCATCCGATACCTCTTCGGAGATGGTTCACGACTGGTGTTCCGTCTATCCG
GAACCGGTTCTGTTGGTGCCACCATCCGTGTCTACATCGAGCAATACGAGAAGGATTCCT
CCAAGACCGGCAGGGATTCACAGGAGGCCCTTGCTCCACTGGTTGATGTTGCGCTCAAGC
TCTCCAAGATGCAAGAGTACACTGGCCGCTCTGCCCCCACCGTTATCACATAAATTTTTG
AAGAGTGATTTACAATGAGTTGAGGCGCTTACACAAATTTTCATTCAAGCCTCTTGTTCT
ATAGTTCTACTTCCTGTTGCATCTCACCAATGAATAAAATGTATGTATCAGACTCGCCCC
GTTTTTTTTTTGTCCATGTACTGCAGTGCAGCGGACTGAGCCGCTGGCACAGCATGCGGT
AATAATCTTGTCACAGTGACAGTGCTGTAATCGGGAGCGTGTTTCTTGTAATCTTGTTAG
GAAGTGTTTCTGGTTTTGTTTGAGCATTTGC