Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d033734_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:1:272416591:272421927:-1 gene:Zm00001d033734 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit alpha-1
Sequence	ATGTGTGCATCTTTCCATCCCAAAGAAGACCTGGTTGTATCGGCATCACTTGATCAGACT GTACGTGTCTGGGATATCGGAGCTCTGAGGAAGAAGACAGTGTCACCTGCAGATGACATC CTCCGTCTCACCCAGATGAACACAGATCTTTTTGGAGGTGTTGATGCTGTAGTGAAATAT GTCCTGGAAGGCCATGATCGTGGGGTCAACTGGGCCTCATTTCATCCCACTTTGCCACTC ATTGTTTCTGGGGCAGATGACCGGCAGGTGAAGCTATGGAGAATGAATGATACCAAGGCT TGGGAAGTTGATACTTTAAGGGGCCACATGAATAATGTGTCTTGTGTGATGTTCCATGCG AAGCAAGACATCATCGTGTCAAACTCAGAAGACAAAAGCATTCGCATTTGGGATGCCACA AAGAGAACTGGTATTCAGACATTTAGACGGGAGCACGACCGTTTCTGGATTCTTGCTGCT CACCCTGAAATGAACCTTCTTGCTGCTGGTCATGACAGTGGCATGATTGTGTTCAAATTA GAGAGGGAACGCCCAGCCTTCTGCGTTAGTGGTGACACTGTCTTCTATTTGAAGGATCGG TTTCTCCGGTTCTTTGAATACTCCACCCAGAAGGAAGTTCAAGTGGCTCCAATAAGAAGA CCTGGATCAGTCAGCTTGAACCAATCACCCAGGACGCTGTCCTACAGCCCAACTGAGAAT GCTGTCTTGATTTGCTCTGATGCTGATGGGGGTTCATATGAACTCTACATTGTTCCCAAG GATTCTGCTGGCAGGTCTGATTACTTGCAAGAGGCAAAGAAAGGAGCTGGTGGTTCTGCT GTTTTTGTAGCGCGCAACAGGTTTGCAGTCCTTGAGAAGAGTAGCAATCAAGTTTTGGTG AAGAATCTTAAGAATGAAATTTTGAAGAAAAGCCCCCTTCCCATTGCGACTGATGCAATA TATTATGCTGGGACCGGTAACCTGCTGTGCAAAGGTGAAGACAGGGTGGCCATCTTTGAT CTTCAGCAAAGGTTAGTTCTTGGTGAGCTCCAAACACCTGCTATCAAATATGTTGTTTGG TCTAGTGACATGGAATCTGTGGCACTACTGAGCAAGCATGCAGTGGTTATAGCTAGCAAG AAGCTTGTCCATAAGTGCACACTGCATGAAACCATCCGTGTGAAAAGTGGTGCCTGGGAT GAGAATGGTGTGTTCATTTACACTACACTGAACCATATGAAGTACTGTCTTCCCAATGGA GATAGTGGGATCATAAAGACTCTCGATGTTCCTATTTACATAACGAGGGTTGTTGGGAAC AACATTTTCTGCTTAGATCGTGATGGAAAAAACAAGCTGATTGCAGTTGATGCATCAGAG TACATTTTCAAGCTCGCCCTTCTCAGAAAACGCTATGATCATGTTATGAGTATGATTAAG AACTCCCAGCTGTGTGGGCAGGCTGTGATTTCTTATTTACAACAGAAAGGTTTCCCAGAA GTTGCTCTACACTTTGTGAAGGATGAGAAGACCAGATTTAACCTAGCTCTCGAGAGTGGT AACATTCAAATTGCAGTTGCTTCTGCAAAGGAGATTGATGACAAGGATCACTGGTACAAG TTGGGAATTGAAGCCCTGAGGCAGGGAAATGTTGGTATAGTGGAATATGCTTACCAACGA ACAAAGAATTTTGAGAGGCTTGCTTTTCTGTATCTTATTACTGGTTACTTGGACAAGGTG GGCTTCATGTGCAAAATTGCTGGACAGAATAACAATTTGATGGGACAGTTCCACAATGCA TTGTATCTTGGGGATGCCAAGAAGCGGGTTGAGATCCTGGAGAATGCTGGACAGCTACCT CTTGCTTATGTTACTGCTGTCACTCATGGGCTCACAGAAATTGCTGAGAGGATTGCTTCT GAATTAGGCGAGAATGTTCCTTCTCTGCCTGAAGGAAAATCCCACTCACTACTGATCCCC CCTGCACCTCTCACAGCGTGTGGTGATTGGCCATTGCTTAGGGTAGTGCGCGGTATTTTT GAAGGTGGACTGGATGCTACTGGAAGGGCAGATCTTGAGGAAGACGATGAAGCTGCTGGT GCTGATTGGGGTGATGAAGACTTGGATATTGTTGATGTAAGTGAGGTGGTGGCAAATGGT GGTGATGGTGTTGATGTAGAAGAGGGTGAGCCAAATGAGGAGGATGGTGAGGAGGGTGGC TGGGACCTGGAAGATCTGGAACTTCCGCCTGAAACTGAGACTCCAAAAGCTGTTGGCAAT GCTCGATCTGCTTTATTCGTTGCTCCTACACCAGGTATTCCTGTCAGCCAAATTTGGACC CAGAGATCTTCTCTGGCTGGGGAGCAAGCGGCAGCAGGGAACTTCGACACAGCAATGAGG TTGCTTAGCCGCCAGTTGGGTATCAAGAACTTTGTTCCACTGAAGCCCTTGTTTATTGAT CTGCACATGGGCAGTCATACATATATGTGTGCGTTTGCCGCTGCGCCTGTTATATCAGTT GCAGTAGAGAAAGGTTGGAATGAGTCTGCAAGTCCTAATGTGAGGGGCCCTCCTGCACTT GTTTTCAGCTTCTCACAAATGGAAGATAGACTCAAGGCTGCCTACAAAGCCACAACTGAG GGCAAGTTCCCCGAAGCACTGAGACAGTTCCTTAGCATCTTGCATACCATTCCAGTTATT GTGGTGGATTCGCGGAGAGAAGTTGATGAGGTGAAGGAATTAATCGAGATAGTGAGGGAG TATGTTCTTGGTCTGAGGATGGAACTCAAGAGAAAGGAATTGAGGGATGATGTGACCCGT CAGCAGGAGTTGGCTGCTTACTTCACGAACTGCAAGCTTCAGAGAGTTCATATGAGGCTT GTGCTCGCAAGCGCTATGGCTCTTTGCTTCAAGCAGAAAAACTATGCAACTGCAGCACAC TTTGCAAGGATGCTTCTTGAGAATAGCCCTCAGGAGGCCCAAGCAAAGAAGGCTCGACAG GTGCTGCAAGCCTGCCAGGACAAGGACGATTCTCACCAACTGAACTATGACTTCAGAAAT CCATTCGTTGTTTGTGGTGCTACATATGTTCCTATCTATCGTGGCCAAAAGGACGTTTCC TGCCCATACTGTGGATCCCGATTTGTTCCTTCCATCGAAGGGCAGCTTTGTACCATATGT GAGCTTGGTGCGGTTGGGGCAGATGCTTCAGGTCTCCTCTGCTCTCCTACACAATCGAGA TAA

Peptide Sequence

PEP ID	Zm00001d033734_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:1:272416591:272421927:-1 gene:Zm00001d033734 transcript:Zm00001d033734_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit alpha-1
Sequence	MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLTQMNTDLFGGVDAVVKY VLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHA KQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKL ERERPAFCVSGDTVFYLKDRFLRFFEYSTQKEVQVAPIRRPGSVSLNQSPRTLSYSPTEN AVLICSDADGGSYELYIVPKDSAGRSDYLQEAKKGAGGSAVFVARNRFAVLEKSSNQVLV KNLKNEILKKSPLPIATDAIYYAGTGNLLCKGEDRVAIFDLQQRLVLGELQTPAIKYVVW SSDMESVALLSKHAVVIASKKLVHKCTLHETIRVKSGAWDENGVFIYTTLNHMKYCLPNG DSGIIKTLDVPIYITRVVGNNIFCLDRDGKNKLIAVDASEYIFKLALLRKRYDHVMSMIK NSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNIQIAVASAKEIDDKDHWYK LGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYLDKVGFMCKIAGQNNNLMGQFHNA LYLGDAKKRVEILENAGQLPLAYVTAVTHGLTEIAERIASELGENVPSLPEGKSHSLLIP PAPLTACGDWPLLRVVRGIFEGGLDATGRADLEEDDEAAGADWGDEDLDIVDVSEVVANG GDGVDVEEGEPNEEDGEEGGWDLEDLELPPETETPKAVGNARSALFVAPTPGIPVSQIWT QRSSLAGEQAAAGNFDTAMRLLSRQLGIKNFVPLKPLFIDLHMGSHTYMCAFAAAPVISV AVEKGWNESASPNVRGPPALVFSFSQMEDRLKAAYKATTEGKFPEALRQFLSILHTIPVI VVDSRREVDEVKELIEIVREYVLGLRMELKRKELRDDVTRQQELAAYFTNCKLQRVHMRL VLASAMALCFKQKNYATAAHFARMLLENSPQEAQAKKARQVLQACQDKDDSHQLNYDFRN PFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELGAVGADASGLLCSPTQSR

Transcript Sequence

Transcript ID	Zm00001d033734_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:272416591:272421927:-1 gene:Zm00001d033734 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit alpha-1
Sequence	CATTCTCCCCCCTCTGCCCTTCTCTCTCCCTCTCTCGCGAGTCCCGAGTCCCGACTCGCA CCTCCAGATCCACCTCCTCCTCCCTCTTCCAGATCCTTCTGTCTCGCCCGTCTGGTGCGC TCTTCGCGTGTTCAGCTCATTTCTCTCGCGCGGATTGGAGGTGTTCCCGCAAGTTACGTG GATGTTTGATGGTTCTGCGATTCGTTGTTTGTGTAATCGTGGGCGCTTGGACTAGATTGC TTTGCAAGTTCGTTGATGAGATCGCTTTTGGTGGGAAGTGCGGTGGTTAATAAGGATATA TGTAACAGTACGGTGCGATGGGTTGGTCGGAACTCGGATCTGGTGCTTGCTTTATCATCT GTGCGTGCGATGATCTGTATGGTAAATAAGTCCTAGTGCTTGATTTTTCCTGTGTCTATA GTTAGTGGATTCTGTGATCTTTGAAACATTAGGTAGAACACCTTCAGTCACAAATCACAA AGGTATTCTCATTAGCACACACAAAAAAAAAACACTTCTGTAATCGTGCTGTCAATCATC GAATTAAGACTAAGACATCCCTAAGCAGAAACAACTACTGTGTAAGCAGACCCTAGGTAC ATGTGTGCAAGGGAGTCTCCTAGGTGCGTACAAGCGAGTCTCCTAGGTCTGTAGATCATG ATCCAACCGTAGGTGTAACTTTAGTTTGTCAAGGGAGTTTTTGATAAAGCTGTGCTAGCT AGTGGTGGAGGGGTTTAAGTGTTAAATGTGACCTACGGTTGGATCAAGATCTAAAGACTT AGGATGCTTGCTTGCAGGCTTGCACCTAAGGTCTACTTGGTACTTGCACAACAGTCGGTA AGAGCGTTACCATTGTTACTTGTAAAACTTACTAATATTCTGGTTTTGCTTACTGTCATA TGATGCAGGTGATGATTATAAGATTAAGGTCTGGAATTACAAGACACACCGTTGCCTTTT CACACTTCACGGACACCTTGACTACATTCGCACTGTGCAATTCCATCATGAGTATCCATG GATTGTAAGTGCTAGTGACGATCAGACAATCCGGATCTGGAACTGGCAGTCACGCACCTG TGTGGCTGTGCTGACTGGGCATAACCATTACGTCATGTGTGCATCTTTCCATCCCAAAGA AGACCTGGTTGTATCGGCATCACTTGATCAGACTGTACGTGTCTGGGATATCGGAGCTCT GAGGAAGAAGACAGTGTCACCTGCAGATGACATCCTCCGTCTCACCCAGATGAACACAGA TCTTTTTGGAGGTGTTGATGCTGTAGTGAAATATGTCCTGGAAGGCCATGATCGTGGGGT CAACTGGGCCTCATTTCATCCCACTTTGCCACTCATTGTTTCTGGGGCAGATGACCGGCA GGTGAAGCTATGGAGAATGAATGATACCAAGGCTTGGGAAGTTGATACTTTAAGGGGCCA CATGAATAATGTGTCTTGTGTGATGTTCCATGCGAAGCAAGACATCATCGTGTCAAACTC AGAAGACAAAAGCATTCGCATTTGGGATGCCACAAAGAGAACTGGTATTCAGACATTTAG ACGGGAGCACGACCGTTTCTGGATTCTTGCTGCTCACCCTGAAATGAACCTTCTTGCTGC TGGTCATGACAGTGGCATGATTGTGTTCAAATTAGAGAGGGAACGCCCAGCCTTCTGCGT TAGTGGTGACACTGTCTTCTATTTGAAGGATCGGTTTCTCCGGTTCTTTGAATACTCCAC CCAGAAGGAAGTTCAAGTGGCTCCAATAAGAAGACCTGGATCAGTCAGCTTGAACCAATC ACCCAGGACGCTGTCCTACAGCCCAACTGAGAATGCTGTCTTGATTTGCTCTGATGCTGA TGGGGGTTCATATGAACTCTACATTGTTCCCAAGGATTCTGCTGGCAGGTCTGATTACTT GCAAGAGGCAAAGAAAGGAGCTGGTGGTTCTGCTGTTTTTGTAGCGCGCAACAGGTTTGC AGTCCTTGAGAAGAGTAGCAATCAAGTTTTGGTGAAGAATCTTAAGAATGAAATTTTGAA GAAAAGCCCCCTTCCCATTGCGACTGATGCAATATATTATGCTGGGACCGGTAACCTGCT GTGCAAAGGTGAAGACAGGGTGGCCATCTTTGATCTTCAGCAAAGGTTAGTTCTTGGTGA GCTCCAAACACCTGCTATCAAATATGTTGTTTGGTCTAGTGACATGGAATCTGTGGCACT ACTGAGCAAGCATGCAGTGGTTATAGCTAGCAAGAAGCTTGTCCATAAGTGCACACTGCA TGAAACCATCCGTGTGAAAAGTGGTGCCTGGGATGAGAATGGTGTGTTCATTTACACTAC ACTGAACCATATGAAGTACTGTCTTCCCAATGGAGATAGTGGGATCATAAAGACTCTCGA TGTTCCTATTTACATAACGAGGGTTGTTGGGAACAACATTTTCTGCTTAGATCGTGATGG AAAAAACAAGCTGATTGCAGTTGATGCATCAGAGTACATTTTCAAGCTCGCCCTTCTCAG AAAACGCTATGATCATGTTATGAGTATGATTAAGAACTCCCAGCTGTGTGGGCAGGCTGT GATTTCTTATTTACAACAGAAAGGTTTCCCAGAAGTTGCTCTACACTTTGTGAAGGATGA GAAGACCAGATTTAACCTAGCTCTCGAGAGTGGTAACATTCAAATTGCAGTTGCTTCTGC AAAGGAGATTGATGACAAGGATCACTGGTACAAGTTGGGAATTGAAGCCCTGAGGCAGGG AAATGTTGGTATAGTGGAATATGCTTACCAACGAACAAAGAATTTTGAGAGGCTTGCTTT TCTGTATCTTATTACTGGTTACTTGGACAAGGTGGGCTTCATGTGCAAAATTGCTGGACA GAATAACAATTTGATGGGACAGTTCCACAATGCATTGTATCTTGGGGATGCCAAGAAGCG GGTTGAGATCCTGGAGAATGCTGGACAGCTACCTCTTGCTTATGTTACTGCTGTCACTCA TGGGCTCACAGAAATTGCTGAGAGGATTGCTTCTGAATTAGGCGAGAATGTTCCTTCTCT GCCTGAAGGAAAATCCCACTCACTACTGATCCCCCCTGCACCTCTCACAGCGTGTGGTGA TTGGCCATTGCTTAGGGTAGTGCGCGGTATTTTTGAAGGTGGACTGGATGCTACTGGAAG GGCAGATCTTGAGGAAGACGATGAAGCTGCTGGTGCTGATTGGGGTGATGAAGACTTGGA TATTGTTGATGTAAGTGAGGTGGTGGCAAATGGTGGTGATGGTGTTGATGTAGAAGAGGG TGAGCCAAATGAGGAGGATGGTGAGGAGGGTGGCTGGGACCTGGAAGATCTGGAACTTCC GCCTGAAACTGAGACTCCAAAAGCTGTTGGCAATGCTCGATCTGCTTTATTCGTTGCTCC TACACCAGGTATTCCTGTCAGCCAAATTTGGACCCAGAGATCTTCTCTGGCTGGGGAGCA AGCGGCAGCAGGGAACTTCGACACAGCAATGAGGTTGCTTAGCCGCCAGTTGGGTATCAA GAACTTTGTTCCACTGAAGCCCTTGTTTATTGATCTGCACATGGGCAGTCATACATATAT GTGTGCGTTTGCCGCTGCGCCTGTTATATCAGTTGCAGTAGAGAAAGGTTGGAATGAGTC TGCAAGTCCTAATGTGAGGGGCCCTCCTGCACTTGTTTTCAGCTTCTCACAAATGGAAGA TAGACTCAAGGCTGCCTACAAAGCCACAACTGAGGGCAAGTTCCCCGAAGCACTGAGACA GTTCCTTAGCATCTTGCATACCATTCCAGTTATTGTGGTGGATTCGCGGAGAGAAGTTGA TGAGGTGAAGGAATTAATCGAGATAGTGAGGGAGTATGTTCTTGGTCTGAGGATGGAACT CAAGAGAAAGGAATTGAGGGATGATGTGACCCGTCAGCAGGAGTTGGCTGCTTACTTCAC GAACTGCAAGCTTCAGAGAGTTCATATGAGGCTTGTGCTCGCAAGCGCTATGGCTCTTTG CTTCAAGCAGAAAAACTATGCAACTGCAGCACACTTTGCAAGGATGCTTCTTGAGAATAG CCCTCAGGAGGCCCAAGCAAAGAAGGCTCGACAGGTGCTGCAAGCCTGCCAGGACAAGGA CGATTCTCACCAACTGAACTATGACTTCAGAAATCCATTCGTTGTTTGTGGTGCTACATA TGTTCCTATCTATCGTGGCCAAAAGGACGTTTCCTGCCCATACTGTGGATCCCGATTTGT TCCTTCCATCGAAGGGCAGCTTTGTACCATATGTGAGCTTGGTGCGGTTGGGGCAGATGC TTCAGGTCTCCTCTGCTCTCCTACACAATCGAGATAAGCCATGGTAGTTAGAGCCCCCCT ATATTCTTTCTAGTGTCTTAAGTTCCAAGACTTAATCATATATTTTACCAGGGAGTTTAG TGATTGTAAGGAATAAGTATTATACATGTTTTTATCAAGTTTTTTTTTTCTTTTTTCGTG TTCTGTTACCATAATTTTTGTTTGCCTAGAGGGTGCTGTCATCACCTGCCGTATGGTTTA GACTTCTGATCAACTTTGGAAGCTATGCTGGAAATTGATGTATGAGATGTCTCTTTC