Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d033669_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:1:270220432:270238013:1 gene:Zm00001d033669 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oxysterol-binding protein-related protein 1C
Sequence

ATGCACCCATTCTGCTGTGCGCCGCTCGTGCCTGTATCGCCCGTGGCCTCCGCCGCGGCC
GCGTCCTCTGCGGTGGCGGGCGCCCCGGCCGTGATGCCGCCACCGCAGCCCCCGCCTCCT
CCGCCTCCTCCGCCCCGAAGCAACCCCGCCTCTGGCGGTGAGAGGCGCGCGCGCGCGGCG
GGGGTCAGCGGTGGCGGAGGAGGCGGTTCCTCGCCGCCCGAGGGGGTGAAGCTGAACGAG
ATCGTCGGCGGCGGCATCTCGGGAATCCTGTACAAGTGGGTCAACTACGGGCGCGGTTGG
AGGCCGCGCTGGTTCGCTCTCCACGACGGCGTGCTCTCCTACTACAAGATCCACGGGCCC
GACCGCATCATCCTATCGCGCGAGACCGAGCGGGGCGCCAAGGTCATCGGCGATGATTCC
CTCCGCCGCCTCAACCGCCCCTCCACCTCCTCGTCGTCCCACTCCAACGGCCACCACCAT
CCTCGAAACCCCATCGGCGAAATCCACCTCAAGGTGTCGACCGTGAGGGAGAGCAGATCG
GACGACAGGAGATTCTCCATCTTCTCGGGGACGAAGACGTTGCACCTGAGAGCGGAGACC
AGGGAGGACAGAGCTGCGTGGCTCGAGGCGCTGCGGGCGACCAAGGACATGTTCCCGAGG
ATGTCCTCCAGCGAGATGGTCGGGCCAGGGGACACCGCAGCGGCAGTGGCCGTCTCGACC
GAGCGCCTAAGGCAGCGGCTGCAGCAGGAAGGGGTCAGCGAGGCGGCCATTGCTGACAGC
GAGATGATCGTGCGGGCAGAATTCGAGGCTCTGCACAAGCAGCTTGTGCTCTCCAAGCAG
AAGCACGCGCTCCTCTTGGAAACTCTTCGCCAGCTAGAGACAGAAAAGGTTGATTTGGAG
AATACCCTTGTCGATGAGAGTCAAAGGCAGTCGAAAGAGTATGGATCTGCTTCTAAACCA
AGACATGAGAAGTATAGTGAAGGAAGTGCTAGTGAATCTGATGATTATAATGAACCACAA
GATCCTGCTGAAGAGACTGATGATGATGAGAACCTTTATTTTGATACAAGAGATTTTCTA
TCCTCAAGCTCTTTTAAAAGTAGTGGATCTGATTTCCAAAGATCTGAAGCTGGTTCAGAT
GATGAAGACGATTATCCAATGGATGGAATTGATCCTTCCATGAAGTCTATTGGGATTAGT
TATCCATATGTAAGAAGGCGGAAGAAGCTACCAGATCCGGTTGAGAAAGAAAAGGGTGTA
AGTTTGTGGTCAATGATCAAGGACAACATAGGAAAGGATCTTACAAAAGTTTGTCTGCCT
GTTTACTTCAATGAGCCACTTTCATCGTTACAAAAATGTTTTGAAGATCTGGAGTATTCC
TACCTTATTGATCGTGCATCTGAATGGGGGAAAAGGGGGAATAGTCTTATGAGGATTCTT
AGCGTAGCAGCATTTGCTGTTTCTGGATATGCCTCTACAGATGGCAGGAGCTGTAAGCCT
TTTAACCCCCTTCTTGGGGAGACATATGAAGCAGACTATCCAGACAAAGGCCTCCGTTTT
TTCTCTGAAAAGGTTAGTCATCACCCTATGGTTGTTGCTTGCCACTGTGAGGGAACTGGC
TGGAGGTTTTGGGCTGATAGCAACCTAAAGAGTAAATTCTGGGGTCGTTCCATCCAACTT
GATCCTGTTGGTGAATTAACACTGGAGTTTGATGATGGGGAAGTTTTCCAATGGAGCAAG
GTGACAACTTCAATTTACAATCTCATATTGGGCAAGCTATATTGCGATCACTATGGTACT
ATGCGCATTCAAGGTAATCGTGAGTATTCATGTAAGCTTAAGTTCAAGGAGCAGTCAATT
ATCGATCGCAACCCTCACCAGGTGCAAGGTGTTGTTCAAGATAGAAATGGTCGAACTGTT
GCTACACTATTTGGAAAATGGGATGAAAGCATGCACTATGTAATGGGTGATTGCTTTGGG
AAAGGCAAGGGAACTGAACAGTTATCGGAGGCCCATTTGTTGTGGAAAAGAAGCAAACCA
CCTAAGTTTCCCACTAGATACAATCTCACTCAATTTGCAATTACATTGAATGAACTTACC
CCTGGATTGAAGGAGAAACTGCCACCTACAGACTCAAGATTACGACCAGACCAGAGATGT
CTGGAGAACGGTGAATATGAAAGGGCAAATGCTGAGAAATTGAGGCTTGAACAGAGACAA
CGGCAGGCACGAAAGATGCAGGAGAGCGGATGGAAGCCTCGGTGGTTTGCGAAGGATAAA
GCTACTGACACATACCGTTACGTCGGTGGGTACTGGGAATCCAGAGAAAAGAGCAGCTGG
GAAGGTTGCCCCGACATCTTCGGACAAGTCCCTAACGATCTGATGGTAACTGACTAG

Peptide Sequence

PEP ID

Zm00001d033669_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:1:270220432:270238013:1 gene:Zm00001d033669 transcript:Zm00001d033669_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oxysterol-binding protein-related protein 1C
Sequence

MHPFCCAPLVPVSPVASAAAASSAVAGAPAVMPPPQPPPPPPPPPRSNPASGGERRARAA
GVSGGGGGGSSPPEGVKLNEIVGGGISGILYKWVNYGRGWRPRWFALHDGVLSYYKIHGP
DRIILSRETERGAKVIGDDSLRRLNRPSTSSSSHSNGHHHPRNPIGEIHLKVSTVRESRS
DDRRFSIFSGTKTLHLRAETREDRAAWLEALRATKDMFPRMSSSEMVGPGDTAAAVAVST
ERLRQRLQQEGVSEAAIADSEMIVRAEFEALHKQLVLSKQKHALLLETLRQLETEKVDLE
NTLVDESQRQSKEYGSASKPRHEKYSEGSASESDDYNEPQDPAEETDDDENLYFDTRDFL
SSSSFKSSGSDFQRSEAGSDDEDDYPMDGIDPSMKSIGISYPYVRRRKKLPDPVEKEKGV
SLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLIDRASEWGKRGNSLMRIL
SVAAFAVSGYASTDGRSCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMVVACHCEGTG
WRFWADSNLKSKFWGRSIQLDPVGELTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGT
MRIQGNREYSCKLKFKEQSIIDRNPHQVQGVVQDRNGRTVATLFGKWDESMHYVMGDCFG
KGKGTEQLSEAHLLWKRSKPPKFPTRYNLTQFAITLNELTPGLKEKLPPTDSRLRPDQRC
LENGEYERANAEKLRLEQRQRQARKMQESGWKPRWFAKDKATDTYRYVGGYWESREKSSW
EGCPDIFGQVPNDLMVTD

Transcript Sequence

Transcript ID

Zm00001d033669_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:270220432:270238013:1 gene:Zm00001d033669 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oxysterol-binding protein-related protein 1C
Sequence

AATCAAAAACACAAAAGAATTCGCTACTTCGCCGGCGACAGGGGCGACCGCGCGCGCCCC
GGCCGGTGCTGATCCGGACTCTCCCATGCACCCATTCTGCTGTGCGCCGCTCGTGCCTGT
ATCGCCCGTGGCCTCCGCCGCGGCCGCGTCCTCTGCGGTGGCGGGCGCCCCGGCCGTGAT
GCCGCCACCGCAGCCCCCGCCTCCTCCGCCTCCTCCGCCCCGAAGCAACCCCGCCTCTGG
CGGTGAGAGGCGCGCGCGCGCGGCGGGGGTCAGCGGTGGCGGAGGAGGCGGTTCCTCGCC
GCCCGAGGGGGTGAAGCTGAACGAGATCGTCGGCGGCGGCATCTCGGGAATCCTGTACAA
GTGGGTCAACTACGGGCGCGGTTGGAGGCCGCGCTGGTTCGCTCTCCACGACGGCGTGCT
CTCCTACTACAAGATCCACGGGCCCGACCGCATCATCCTATCGCGCGAGACCGAGCGGGG
CGCCAAGGTCATCGGCGATGATTCCCTCCGCCGCCTCAACCGCCCCTCCACCTCCTCGTC
GTCCCACTCCAACGGCCACCACCATCCTCGAAACCCCATCGGCGAAATCCACCTCAAGGT
GTCGACCGTGAGGGAGAGCAGATCGGACGACAGGAGATTCTCCATCTTCTCGGGGACGAA
GACGTTGCACCTGAGAGCGGAGACCAGGGAGGACAGAGCTGCGTGGCTCGAGGCGCTGCG
GGCGACCAAGGACATGTTCCCGAGGATGTCCTCCAGCGAGATGGTCGGGCCAGGGGACAC
CGCAGCGGCAGTGGCCGTCTCGACCGAGCGCCTAAGGCAGCGGCTGCAGCAGGAAGGGGT
CAGCGAGGCGGCCATTGCTGACAGCGAGATGATCGTGCGGGCAGAATTCGAGGCTCTGCA
CAAGCAGCTTGTGCTCTCCAAGCAGAAGCACGCGCTCCTCTTGGAAACTCTTCGCCAGCT
AGAGACAGAAAAGGTTGATTTGGAGAATACCCTTGTCGATGAGAGTCAAAGGCAGTCGAA
AGAGTATGGATCTGCTTCTAAACCAAGACATGAGAAGTATAGTGAAGGAAGTGCTAGTGA
ATCTGATGATTATAATGAACCACAAGATCCTGCTGAAGAGACTGATGATGATGAGAACCT
TTATTTTGATACAAGAGATTTTCTATCCTCAAGCTCTTTTAAAAGTAGTGGATCTGATTT
CCAAAGATCTGAAGCTGGTTCAGATGATGAAGACGATTATCCAATGGATGGAATTGATCC
TTCCATGAAGTCTATTGGGATTAGTTATCCATATGTAAGAAGGCGGAAGAAGCTACCAGA
TCCGGTTGAGAAAGAAAAGGGTGTAAGTTTGTGGTCAATGATCAAGGACAACATAGGAAA
GGATCTTACAAAAGTTTGTCTGCCTGTTTACTTCAATGAGCCACTTTCATCGTTACAAAA
ATGTTTTGAAGATCTGGAGTATTCCTACCTTATTGATCGTGCATCTGAATGGGGGAAAAG
GGGGAATAGTCTTATGAGGATTCTTAGCGTAGCAGCATTTGCTGTTTCTGGATATGCCTC
TACAGATGGCAGGAGCTGTAAGCCTTTTAACCCCCTTCTTGGGGAGACATATGAAGCAGA
CTATCCAGACAAAGGCCTCCGTTTTTTCTCTGAAAAGGTTAGTCATCACCCTATGGTTGT
TGCTTGCCACTGTGAGGGAACTGGCTGGAGGTTTTGGGCTGATAGCAACCTAAAGAGTAA
ATTCTGGGGTCGTTCCATCCAACTTGATCCTGTTGGTGAATTAACACTGGAGTTTGATGA
TGGGGAAGTTTTCCAATGGAGCAAGGTGACAACTTCAATTTACAATCTCATATTGGGCAA
GCTATATTGCGATCACTATGGTACTATGCGCATTCAAGGTAATCGTGAGTATTCATGTAA
GCTTAAGTTCAAGGAGCAGTCAATTATCGATCGCAACCCTCACCAGGTGCAAGGTGTTGT
TCAAGATAGAAATGGTCGAACTGTTGCTACACTATTTGGAAAATGGGATGAAAGCATGCA
CTATGTAATGGGTGATTGCTTTGGGAAAGGCAAGGGAACTGAACAGTTATCGGAGGCCCA
TTTGTTGTGGAAAAGAAGCAAACCACCTAAGTTTCCCACTAGATACAATCTCACTCAATT
TGCAATTACATTGAATGAACTTACCCCTGGATTGAAGGAGAAACTGCCACCTACAGACTC
AAGATTACGACCAGACCAGAGATGTCTGGAGAACGGTGAATATGAAAGGGCAAATGCTGA
GAAATTGAGGCTTGAACAGAGACAACGGCAGGCACGAAAGATGCAGGAGAGCGGATGGAA
GCCTCGGTGGTTTGCGAAGGATAAAGCTACTGACACATACCGTTACGTCGGTGGGTACTG
GGAATCCAGAGAAAAGAGCAGCTGGGAAGGTTGCCCCGACATCTTCGGACAAGTCCCTAA
CGATCTGATGGTAACTGACTAGGTTCGAGTAGGTTATAGGTCTTTTGCTTCTCCTTATCG
GTATCACTTGATTCCGGAAATTTTAGTGGTTCATATTATAGAGCAATTAAGTGCCCGTTG
ACAAGTAAACATTGGCAGTGCCTCCGGTAATATTGGTCTCGTACATAATAAGAAGAAAAT
GGTTCGGTCTCACATGTTACCTTATTTTTTTTTGGCTTTTGGTATAGTAATAGTTTTTTT
TCCTTGTGAGGTTTTCATGCTCACAAGTTCAGTCTTCAAAGTGGTGTAGCGTGGGCGATT
AGTGGTCATGACTAAATATATGTAACTACGCTACGCATACAGGAGGAGGCCGTGAATTTG
TTCATTTTGGTGCTAGTGGTAGTTGGTCCTTTGCGTATCGATTTTTGAATGCCGGATATG
TGCATTAGAACACCAACGGCTATTTTGTGCATCGTGGTATTGATCTGCTGTAAGATACAG
TGAAAGGTACGTACCTTTCTTCCTTGTATCTAATTATTTAAACAATACGTCAGTGTCATC
AAATGAATATATTCTGTGTGATTTAACCTTT